RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 SH2B3Q9UQQ2 575 aa5.62□□□□□ -1.51
SCFD1-209ENST00000553280 TBC1D3DA0A087WVF3 549 aa5.61□□□□□ -1.51
SCFD1-209ENST00000553280 TBC1D3IA0A087WXS9 549 aa5.61□□□□□ -1.51
SCFD1-209ENST00000553280 TBC1D3EA0A087X179 549 aa5.61□□□□□ -1.51
SCFD1-209ENST00000553280 TBC1D3KA0A087X1G2 549 aa5.61□□□□□ -1.51
SCFD1-209ENST00000553280 TBC1D3BA6NDS4 549 aa5.61□□□□□ -1.51
SCFD1-209ENST00000553280 TBC1D3FA6NER0 549 aaPredicted RBP5.61□□□□□ -1.51
SCFD1-209ENST00000553280 PGPEP1LA6NFU8 196 aa5.61□□□□□ -1.51
SCFD1-209ENST00000553280 TMEM200CA6NKL6 621 aa5.61□□□□□ -1.51
SCFD1-209ENST00000553280 TBC1D3LB9A6J9 549 aa5.61□□□□□ -1.51
SCFD1-209ENST00000553280 CYR61O00622 381 aa5.61□□□□□ -1.51
SCFD1-209ENST00000553280 IL6RP08887 468 aaPredicted RBP5.61□□□□□ -1.51
SCFD1-209ENST00000553280 CSF1P09603 554 aa5.61□□□□□ -1.51
SCFD1-209ENST00000553280 TBC1D3HP0C7X1 549 aa5.61□□□□□ -1.51
SCFD1-209ENST00000553280 ALADP13716 330 aa5.61□□□□□ -1.51
SCFD1-209ENST00000553280 TNNT1P13805 278 aa5.61□□□□□ -1.51
SCFD1-209ENST00000553280 CREB1P16220 341 aa5.61□□□□□ -1.51
SCFD1-209ENST00000553280 TGM1P22735 817 aa5.61□□□□□ -1.51
SCFD1-209ENST00000553280 ABCD3P28288 659 aa5.61□□□□□ -1.51
SCFD1-209ENST00000553280 HMGA2P52926 109 aa5.61□□□□□ -1.51
SCFD1-209ENST00000553280 FOXL2P58012 376 aa5.61□□□□□ -1.51
SCFD1-209ENST00000553280 GALNT2Q10471 571 aa5.61□□□□□ -1.51
SCFD1-209ENST00000553280 EIF2B5Q13144 721 aaKnown RBP5.61□□□□□ -1.51
SCFD1-209ENST00000553280 TBCCQ15814 346 aa5.61□□□□□ -1.51
SCFD1-209ENST00000553280 ANKRD40Q6AI12 368 aa5.61□□□□□ -1.51
SCFD1-209ENST00000553280 TBC1D3GQ6DHY5 549 aa5.61□□□□□ -1.51
SCFD1-209ENST00000553280 ITPRIPL1Q6GPH6 555 aa5.61□□□□□ -1.51
SCFD1-209ENST00000553280 TBC1D3CQ6IPX1 549 aa5.61□□□□□ -1.51
SCFD1-209ENST00000553280 KRTAP5-3Q6L8H2 238 aa5.61□□□□□ -1.51
SCFD1-209ENST00000553280 DENND1BQ6P3S1 775 aa5.61□□□□□ -1.51
SCFD1-209ENST00000553280 ACSM6Q6P461 480 aa5.61□□□□□ -1.51
SCFD1-209ENST00000553280 C16orf54Q6UWD8 224 aa5.61□□□□□ -1.51
SCFD1-209ENST00000553280 FASTKD5Q7L8L6 764 aaKnown RBP5.61□□□□□ -1.51
SCFD1-209ENST00000553280 ARMC8Q8IUR7 673 aa5.61□□□□□ -1.51
SCFD1-209ENST00000553280 C1orf210Q8IVY1 113 aa5.61□□□□□ -1.51
SCFD1-209ENST00000553280 TBC1D3Q8IZP1 549 aaPredicted RBP5.61□□□□□ -1.51
SCFD1-209ENST00000553280 TDRD9Q8NDG6 1382 aaKnown RBP5.61□□□□□ -1.51
SCFD1-209ENST00000553280 LINS1Q8NG48 757 aa5.61□□□□□ -1.51
SCFD1-209ENST00000553280 MYCBPAPQ8TBZ2 947 aa5.61□□□□□ -1.51
SCFD1-209ENST00000553280 TBC1D22AQ8WUA7 517 aa5.61□□□□□ -1.51
SCFD1-209ENST00000553280 APOPT1Q96IL0 206 aa5.61□□□□□ -1.51
SCFD1-209ENST00000553280 PGBD1Q96JS3 809 aa5.61□□□□□ -1.51
SCFD1-209ENST00000553280 BARD1Q99728 777 aaKnown RBP5.61□□□□□ -1.51
SCFD1-209ENST00000553280 NPAS1Q99742 590 aa5.61□□□□□ -1.51
SCFD1-209ENST00000553280 MRIQ9BWK5 157 aa5.61□□□□□ -1.51
SCFD1-209ENST00000553280 ORC3Q9UBD5 711 aaPredicted RBP5.61□□□□□ -1.51
SCFD1-209ENST00000553280 ING1Q9UK53 422 aaPredicted RBP5.61□□□□□ -1.51
SCFD1-209ENST00000553280 RAB21Q9UL25 225 aa5.61□□□□□ -1.51
SCFD1-209ENST00000553280 TRPC5Q9UL62 973 aaPredicted RBP5.61□□□□□ -1.51
SCFD1-209ENST00000553280 SLC12A4Q9UP95 1085 aa5.61□□□□□ -1.51
SCFD1-209ENST00000553280 RCE1Q9Y256 329 aa5.61□□□□□ -1.51
SCFD1-209ENST00000553280 ADGRA2Q96PE1 1338 aa5.6□□□□□ -1.51
SCFD1-209ENST00000553280 CCDC187A0A096LP49 1063 aa5.6□□□□□ -1.51
SCFD1-209ENST00000553280 AGAP5A6NIR3 686 aa5.6□□□□□ -1.51
SCFD1-209ENST00000553280 SPTLC2O15270 562 aa5.6□□□□□ -1.51
SCFD1-209ENST00000553280 LPXNO60711 386 aa5.6□□□□□ -1.51
SCFD1-209ENST00000553280 FAM20BO75063 409 aa5.6□□□□□ -1.51
SCFD1-209ENST00000553280 ZBED4O75132 1171 aa5.6□□□□□ -1.51
SCFD1-209ENST00000553280 GUCY1B2O75343 617 aa5.6□□□□□ -1.51
SCFD1-209ENST00000553280 GFPT2O94808 682 aa5.6□□□□□ -1.51
SCFD1-209ENST00000553280 SPDEFO95238 335 aa5.6□□□□□ -1.51
SCFD1-209ENST00000553280 FESP07332 822 aa5.6□□□□□ -1.51
SCFD1-209ENST00000553280 RHOP08100 348 aa5.6□□□□□ -1.51
SCFD1-209ENST00000553280 LAG3P18627 525 aa5.6□□□□□ -1.51
SCFD1-209ENST00000553280 ADRA1DP25100 572 aa5.6□□□□□ -1.51
SCFD1-209ENST00000553280 ZFP36P26651 326 aaKnown RBP5.6□□□□□ -1.51
SCFD1-209ENST00000553280 MCM5P33992 734 aa5.6□□□□□ -1.51
SCFD1-209ENST00000553280 PNPLA4P41247 253 aa5.6□□□□□ -1.51
SCFD1-209ENST00000553280 CLNS1AP54105 237 aaKnown RBP5.6□□□□□ -1.51
SCFD1-209ENST00000553280 NAP1L1P55209 391 aaKnown RBP5.6□□□□□ -1.51
SCFD1-209ENST00000553280 TLE3Q04726 772 aa5.6□□□□□ -1.51
SCFD1-209ENST00000553280 TBL3Q12788 808 aaKnown RBP5.6□□□□□ -1.51
SCFD1-209ENST00000553280 KLF10Q13118 480 aa5.6□□□□□ -1.51
SCFD1-209ENST00000553280 CBFBQ13951 182 aa5.6□□□□□ -1.51
SCFD1-209ENST00000553280 CAMK1Q14012 370 aa5.6□□□□□ -1.51
SCFD1-209ENST00000553280 KRT32Q14532 448 aa5.6□□□□□ -1.51
SCFD1-209ENST00000553280 TOMM20Q15388 145 aa5.6□□□□□ -1.51
SCFD1-209ENST00000553280 SF3B3Q15393 1217 aaKnown RBP5.6□□□□□ -1.51
SCFD1-209ENST00000553280 GPR68Q15743 365 aa5.6□□□□□ -1.51
SCFD1-209ENST00000553280 FAM187BQ17R55 369 aa5.6□□□□□ -1.51
SCFD1-209ENST00000553280 LRRC24Q50LG9 513 aa5.6□□□□□ -1.51
SCFD1-209ENST00000553280 LIPMQ5VYY2 423 aa5.6□□□□□ -1.51
SCFD1-209ENST00000553280 HAUS3Q68CZ6 603 aa5.6□□□□□ -1.51
SCFD1-209ENST00000553280 IGFL4Q6B9Z1 124 aa5.6□□□□□ -1.51
SCFD1-209ENST00000553280 TTLL5Q6EMB2 1281 aa5.6□□□□□ -1.51
SCFD1-209ENST00000553280 C16orf89Q6UX73 402 aa5.6□□□□□ -1.51
SCFD1-209ENST00000553280 R3HCC1LQ7Z5L2 792 aaKnown RBP5.6□□□□□ -1.51
SCFD1-209ENST00000553280 GPR149Q86SP6 731 aa5.6□□□□□ -1.51
SCFD1-209ENST00000553280 P3H2Q8IVL5 708 aa5.6□□□□□ -1.51
SCFD1-209ENST00000553280 GALNT4Q8N4A0 578 aa5.6□□□□□ -1.51
SCFD1-209ENST00000553280 PDILTQ8N807 584 aa5.6□□□□□ -1.51
SCFD1-209ENST00000553280 ANKRD52Q8NB46 1076 aa5.6□□□□□ -1.51
SCFD1-209ENST00000553280 NGDNQ8NEJ9 315 aaKnown RBP5.6□□□□□ -1.51
SCFD1-209ENST00000553280 ZMIZ2Q8NF64 920 aa5.6□□□□□ -1.51
SCFD1-209ENST00000553280 SSH3Q8TE77 659 aa5.6□□□□□ -1.51
SCFD1-209ENST00000553280 ZNF503Q96F45 646 aa5.6□□□□□ -1.51
SCFD1-209ENST00000553280 FUZQ9BT04 418 aa5.6□□□□□ -1.51
SCFD1-209ENST00000553280 ALG8Q9BVK2 526 aa5.6□□□□□ -1.51
SCFD1-209ENST00000553280 HERC2P3Q9BVR0 1158 aa5.6□□□□□ -1.51
SCFD1-209ENST00000553280 ARHGAP39Q9C0H5 1083 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms