RNA–Protein interactions for RNA: ENST00000550914.6

PTCH1-221, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-221ENST00000550914 RAB20Q9NX57 234 aa13.46□□□□□ -0.25
PTCH1-221ENST00000550914 MAPK8IP1Q9UQF2 711 aa13.46□□□□□ -0.25
PTCH1-221ENST00000550914 PLXNB3Q9ULL4 1909 aa13.45□□□□□ -0.26
PTCH1-221ENST00000550914 A0A1W2PQ27 194 aa13.45□□□□□ -0.26
PTCH1-221ENST00000550914 A0A1W2PQ64 194 aa13.45□□□□□ -0.26
PTCH1-221ENST00000550914 SLC12A8A0AV02 714 aa13.45□□□□□ -0.26
PTCH1-221ENST00000550914 METTL12A8MUP2 240 aa13.45□□□□□ -0.26
PTCH1-221ENST00000550914 SH3BP5O60239 455 aa13.45□□□□□ -0.26
PTCH1-221ENST00000550914 HMBSP08397 361 aa13.45□□□□□ -0.26
PTCH1-221ENST00000550914 PRR29P0C7W0 189 aa13.45□□□□□ -0.26
PTCH1-221ENST00000550914 TRIP4Q15650 581 aaPredicted RBP13.45□□□□□ -0.26
PTCH1-221ENST00000550914 IL27RAQ6UWB1 636 aa13.45□□□□□ -0.26
PTCH1-221ENST00000550914 KRBA2Q6ZNG9 492 aa13.45□□□□□ -0.26
PTCH1-221ENST00000550914 GLRX5Q86SX6 157 aa13.45□□□□□ -0.26
PTCH1-221ENST00000550914 NAXDQ8IW45 347 aa13.45□□□□□ -0.26
PTCH1-221ENST00000550914 CHCHD4Q8N4Q1 142 aa13.45□□□□□ -0.26
PTCH1-221ENST00000550914 DDI1Q8WTU0 396 aa13.45□□□□□ -0.26
PTCH1-221ENST00000550914 ADAMTS14Q8WXS8 1223 aa13.45□□□□□ -0.26
PTCH1-221ENST00000550914 SEMA4DQ92854 862 aa13.45□□□□□ -0.26
PTCH1-221ENST00000550914 ERLEC1Q96DZ1 483 aa13.45□□□□□ -0.26
PTCH1-221ENST00000550914 MMRN2Q9H8L6 949 aa13.45□□□□□ -0.26
PTCH1-221ENST00000550914 STOML2Q9UJZ1 356 aa13.45□□□□□ -0.26
PTCH1-221ENST00000550914 HBS1LQ9Y450 684 aaKnown RBP13.45□□□□□ -0.26
PTCH1-221ENST00000550914 PCDHB9Q9Y5E1 797 aa13.45□□□□□ -0.26
PTCH1-221ENST00000550914 MUC22E2RYF6 1773 aaPredicted RBP13.45□□□□□ -0.26
PTCH1-221ENST00000550914 KCNJ18B7U540 433 aa13.44□□□□□ -0.26
PTCH1-221ENST00000550914 XPO1O14980 1071 aaKnown RBP13.44□□□□□ -0.26
PTCH1-221ENST00000550914 CETN3O15182 167 aa13.44□□□□□ -0.26
PTCH1-221ENST00000550914 CER1O95813 267 aa13.44□□□□□ -0.26
PTCH1-221ENST00000550914 LATS1O95835 1130 aa13.44□□□□□ -0.26
PTCH1-221ENST00000550914 CAPNS1P04632 268 aa13.44□□□□□ -0.26
PTCH1-221ENST00000550914 EPB41P11171 864 aaKnown RBP13.44□□□□□ -0.26
PTCH1-221ENST00000550914 ACADMP11310 421 aa13.44□□□□□ -0.26
PTCH1-221ENST00000550914 MAOBP27338 520 aa13.44□□□□□ -0.26
PTCH1-221ENST00000550914 HARS2P49590 506 aaKnown RBP13.44□□□□□ -0.26
PTCH1-221ENST00000550914 TKTL1P51854 596 aa13.44□□□□□ -0.26
PTCH1-221ENST00000550914 COPAP53621 1224 aa13.44□□□□□ -0.26
PTCH1-221ENST00000550914 BCAT1P54687 386 aa13.44□□□□□ -0.26
PTCH1-221ENST00000550914 CAMK2GQ13555 558 aaPredicted RBP13.44□□□□□ -0.26
PTCH1-221ENST00000550914 MPPE1Q53F39 396 aa13.44□□□□□ -0.26
PTCH1-221ENST00000550914 WFIKKN2Q8TEU8 576 aa13.44□□□□□ -0.26
PTCH1-221ENST00000550914 CCDC34Q96HJ3 373 aa13.44□□□□□ -0.26
PTCH1-221ENST00000550914 ARID3AQ99856 593 aa13.44□□□□□ -0.26
PTCH1-221ENST00000550914 IRX2Q9BZI1 471 aaPredicted RBP13.44□□□□□ -0.26
PTCH1-221ENST00000550914 CIPCQ9C0C6 399 aa13.44□□□□□ -0.26
PTCH1-221ENST00000550914 SCAND2PQ9GZW5 306 aaPredicted RBP13.44□□□□□ -0.26
PTCH1-221ENST00000550914 FBRSQ9HAH7 460 aa13.44□□□□□ -0.26
PTCH1-221ENST00000550914 RALYQ9UKM9 306 aaKnown RBP13.44□□□□□ -0.26
PTCH1-221ENST00000550914 APOBEC2Q9Y235 224 aaKnown RBP13.44□□□□□ -0.26
PTCH1-221ENST00000550914 COQ4Q9Y3A0 265 aa13.44□□□□□ -0.26
PTCH1-221ENST00000550914 BCAT2O15382 392 aaPredicted RBP13.43□□□□□ -0.26
PTCH1-221ENST00000550914 CBFA2T3O75081 653 aa13.43□□□□□ -0.26
PTCH1-221ENST00000550914 EPHX1P07099 455 aa13.43□□□□□ -0.26
PTCH1-221ENST00000550914 FTH1P19P0C7X4 201 aa13.43□□□□□ -0.26
PTCH1-221ENST00000550914 ATXN8OSP0DMR3 200 aa13.43□□□□□ -0.26
PTCH1-221ENST00000550914 PRKCHP24723 683 aa13.43□□□□□ -0.26
PTCH1-221ENST00000550914 HOXD9P28356 352 aaPredicted RBP13.43□□□□□ -0.26
PTCH1-221ENST00000550914 YWHAEP62258 255 aaKnown RBP13.43□□□□□ -0.26
PTCH1-221ENST00000550914 ARID5AQ03989 594 aa13.43□□□□□ -0.26
PTCH1-221ENST00000550914 BST2Q10589 180 aaKnown RBP13.43□□□□□ -0.26
PTCH1-221ENST00000550914 DCAF12L1Q5VU92 463 aa13.43□□□□□ -0.26
PTCH1-221ENST00000550914 TMEM215Q68D42 235 aa13.43□□□□□ -0.26
PTCH1-221ENST00000550914 SERPINA13PQ6UXR4 307 aa13.43□□□□□ -0.26
PTCH1-221ENST00000550914 BHLHA9Q7RTU4 235 aa13.43□□□□□ -0.26
PTCH1-221ENST00000550914 SCML4Q8N228 414 aa13.43□□□□□ -0.26
PTCH1-221ENST00000550914 ZCCHC9Q8N567 271 aaKnown RBP13.43□□□□□ -0.26
PTCH1-221ENST00000550914 OR2T3Q8NH03 318 aa13.43□□□□□ -0.26
PTCH1-221ENST00000550914 C1orf216Q8TAB5 229 aa13.43□□□□□ -0.26
PTCH1-221ENST00000550914 CAMK1GQ96NX5 476 aa13.43□□□□□ -0.26
PTCH1-221ENST00000550914 ULBP1Q9BZM6 244 aa13.43□□□□□ -0.26
PTCH1-221ENST00000550914 HESX1Q9UBX0 185 aa13.43□□□□□ -0.26
PTCH1-221ENST00000550914 KIAA1257Q9ULG3 409 aa13.43□□□□□ -0.26
PTCH1-221ENST00000550914 CLEC4EQ9ULY5 219 aa13.43□□□□□ -0.26
PTCH1-221ENST00000550914 PCDHGB2Q9Y5G2 931 aa13.43□□□□□ -0.26
PTCH1-221ENST00000550914 ATP6V1DQ9Y5K8 247 aa13.43□□□□□ -0.26
PTCH1-221ENST00000550914 TMEM131Q92545 1883 aa13.42□□□□□ -0.26
PTCH1-221ENST00000550914 SLC16A3O15427 465 aaKnown RBP13.42□□□□□ -0.26
PTCH1-221ENST00000550914 ZNF202O95125 648 aa13.42□□□□□ -0.26
PTCH1-221ENST00000550914 MATKP42679 507 aa13.42□□□□□ -0.26
PTCH1-221ENST00000550914 ZBTB16Q05516 673 aa13.42□□□□□ -0.26
PTCH1-221ENST00000550914 CUL2Q13617 745 aa13.42□□□□□ -0.26
PTCH1-221ENST00000550914 COBLL1Q53SF7 1204 aa13.42□□□□□ -0.26
PTCH1-221ENST00000550914 SGO2Q562F6 1265 aa13.42□□□□□ -0.26
PTCH1-221ENST00000550914 MPP7Q5T2T1 576 aa13.42□□□□□ -0.26
PTCH1-221ENST00000550914 ADGRF1Q5T601 910 aa13.42□□□□□ -0.26
PTCH1-221ENST00000550914 DBX2Q6ZNG2 339 aa13.42□□□□□ -0.26
PTCH1-221ENST00000550914 KIAA0907Q7Z7F0 614 aaPredicted RBP13.42□□□□□ -0.26
PTCH1-221ENST00000550914 PROSER1Q86XN7 944 aa13.42□□□□□ -0.26
PTCH1-221ENST00000550914 FMNL3Q8IVF7 1028 aa13.42□□□□□ -0.26
PTCH1-221ENST00000550914 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.42□□□□□ -0.26
PTCH1-221ENST00000550914 RNF139Q8WU17 664 aa13.42□□□□□ -0.26
PTCH1-221ENST00000550914 SORCS1Q8WY21 1168 aa13.42□□□□□ -0.26
PTCH1-221ENST00000550914 KCTD13Q8WZ19 329 aa13.42□□□□□ -0.26
PTCH1-221ENST00000550914 TATDN2Q93075 761 aa13.42□□□□□ -0.26
PTCH1-221ENST00000550914 IPO9Q96P70 1041 aaKnown RBP13.42□□□□□ -0.26
PTCH1-221ENST00000550914 MIR1-1HGQ9H1L0 117 aa13.42□□□□□ -0.26
PTCH1-221ENST00000550914 TMEM245Q9H330 911 aa13.42□□□□□ -0.26
PTCH1-221ENST00000550914 LRRC4Q9HBW1 653 aa13.42□□□□□ -0.26
PTCH1-221ENST00000550914 OSGEPQ9NPF4 335 aa13.42□□□□□ -0.26
PTCH1-221ENST00000550914 CNGB3Q9NQW8 809 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms