RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 TBATAQ96M53 351 aa4.69□□□□□ -1.66
VPS29-205ENST00000548539 MAF1Q9H063 256 aa4.69□□□□□ -1.66
VPS29-205ENST00000548539 CHODLQ9H9P2 273 aa4.69□□□□□ -1.66
VPS29-205ENST00000548539 SLC17A6Q9P2U8 582 aa4.69□□□□□ -1.66
VPS29-205ENST00000548539 LRIT1Q9P2V4 623 aa4.69□□□□□ -1.66
VPS29-205ENST00000548539 CRYL1Q9Y2S2 319 aa4.69□□□□□ -1.66
VPS29-205ENST00000548539 WDR27A2RRH5 827 aa4.68□□□□□ -1.66
VPS29-205ENST00000548539 M0QZQ0 153 aa4.68□□□□□ -1.66
VPS29-205ENST00000548539 CTIFO43310 598 aaKnown RBP4.68□□□□□ -1.66
VPS29-205ENST00000548539 NXPH3O95157 252 aa4.68□□□□□ -1.66
VPS29-205ENST00000548539 SERPINA4P29622 427 aa4.68□□□□□ -1.66
VPS29-205ENST00000548539 THBS4P35443 961 aa4.68□□□□□ -1.66
VPS29-205ENST00000548539 FOLR3P41439 243 aa4.68□□□□□ -1.66
VPS29-205ENST00000548539 ACTR2P61160 394 aa4.68□□□□□ -1.66
VPS29-205ENST00000548539 SUMO2P61956 95 aaKnown RBP4.68□□□□□ -1.66
VPS29-205ENST00000548539 SEMA3BQ13214 749 aa4.68□□□□□ -1.66
VPS29-205ENST00000548539 SLC12A1Q13621 1099 aa4.68□□□□□ -1.66
VPS29-205ENST00000548539 BMPR2Q13873 1038 aa4.68□□□□□ -1.66
VPS29-205ENST00000548539 PTPRRQ15256 657 aa4.68□□□□□ -1.66
VPS29-205ENST00000548539 ST3GAL2Q16842 350 aa4.68□□□□□ -1.66
VPS29-205ENST00000548539 KAZNQ674X7 775 aa4.68□□□□□ -1.66
VPS29-205ENST00000548539 CPT1BQ92523 772 aa4.68□□□□□ -1.66
VPS29-205ENST00000548539 WASF1Q92558 559 aa4.68□□□□□ -1.66
VPS29-205ENST00000548539 CTHRC1Q96CG8 243 aa4.68□□□□□ -1.66
VPS29-205ENST00000548539 REXO5Q96IC2 774 aaKnown RBP4.68□□□□□ -1.66
VPS29-205ENST00000548539 VPS50Q96JG6 964 aa4.68□□□□□ -1.66
VPS29-205ENST00000548539 KLK15Q9H2R5 256 aa4.68□□□□□ -1.66
VPS29-205ENST00000548539 SAP30LQ9HAJ7 183 aa4.68□□□□□ -1.66
VPS29-205ENST00000548539 ARHGEF3Q9NR81 526 aa4.68□□□□□ -1.66
VPS29-205ENST00000548539 FBXO28Q9NVF7 368 aa4.68□□□□□ -1.66
VPS29-205ENST00000548539 ANAPC4Q9UJX5 808 aa4.68□□□□□ -1.66
VPS29-205ENST00000548539 RAB21Q9UL25 225 aa4.68□□□□□ -1.66
VPS29-205ENST00000548539 VPS4AQ9UN37 437 aa4.68□□□□□ -1.66
VPS29-205ENST00000548539 A8MVJ9 347 aa4.67□□□□□ -1.66
VPS29-205ENST00000548539 EFCAB8A8MWE9 144 aa4.67□□□□□ -1.66
VPS29-205ENST00000548539 MPPED1O15442 326 aa4.67□□□□□ -1.66
VPS29-205ENST00000548539 PDE8BO95263 885 aa4.67□□□□□ -1.66
VPS29-205ENST00000548539 TK1P04183 234 aa4.67□□□□□ -1.66
VPS29-205ENST00000548539 CYP21A2P08686 494 aa4.67□□□□□ -1.66
VPS29-205ENST00000548539 EBLN1P0CF75 366 aa4.67□□□□□ -1.66
VPS29-205ENST00000548539 PCSK6P29122 969 aa4.67□□□□□ -1.66
VPS29-205ENST00000548539 CYP2C18P33260 490 aa4.67□□□□□ -1.66
VPS29-205ENST00000548539 RBM5P52756 815 aaKnown RBP eCLIP4.67□□□□□ -1.66
VPS29-205ENST00000548539 FAM3BP58499 235 aaPredicted RBP4.67□□□□□ -1.66
VPS29-205ENST00000548539 MRPS35P82673 323 aaKnown RBP4.67□□□□□ -1.66
VPS29-205ENST00000548539 PSG6Q00889 435 aa4.67□□□□□ -1.66
VPS29-205ENST00000548539 ZNF569Q5MCW4 686 aa4.67□□□□□ -1.66
VPS29-205ENST00000548539 L1TD1Q5T7N2 865 aaKnown RBP4.67□□□□□ -1.66
VPS29-205ENST00000548539 FAM90A2PQ658T7 463 aa4.67□□□□□ -1.66
VPS29-205ENST00000548539 Q6ZWC4 215 aa4.67□□□□□ -1.66
VPS29-205ENST00000548539 PEG10Q86TG7 708 aaKnown RBP4.67□□□□□ -1.66
VPS29-205ENST00000548539 HEATR4Q86WZ0 1026 aa4.67□□□□□ -1.66
VPS29-205ENST00000548539 SIRT6Q8N6T7 355 aa4.67□□□□□ -1.66
VPS29-205ENST00000548539 TEX19Q8NA77 164 aa4.67□□□□□ -1.66
VPS29-205ENST00000548539 RSPRY1Q96DX4 576 aa4.67□□□□□ -1.66
VPS29-205ENST00000548539 MAELQ96JY0 434 aaKnown RBP4.67□□□□□ -1.66
VPS29-205ENST00000548539 TRIM36Q9NQ86 728 aa4.67□□□□□ -1.66
VPS29-205ENST00000548539 NDUFAF4Q9P032 175 aa4.67□□□□□ -1.66
VPS29-205ENST00000548539 FOXJ2Q9P0K8 574 aa4.67□□□□□ -1.66
VPS29-205ENST00000548539 PDP2Q9P2J9 529 aa4.67□□□□□ -1.66
VPS29-205ENST00000548539 MGAT4CQ9UBM8 478 aa4.67□□□□□ -1.66
VPS29-205ENST00000548539 ST3GAL5Q9UNP4 418 aa4.67□□□□□ -1.66
VPS29-205ENST00000548539 SLC38A8A6NNN8 435 aa4.66□□□□□ -1.66
VPS29-205ENST00000548539 LINC00473A8K010 186 aa4.66□□□□□ -1.66
VPS29-205ENST00000548539 URI1O94763 535 aaPredicted RBP4.66□□□□□ -1.66
VPS29-205ENST00000548539 FPR3P25089 353 aa4.66□□□□□ -1.66
VPS29-205ENST00000548539 ADRA1DP25100 572 aa4.66□□□□□ -1.66
VPS29-205ENST00000548539 ITPKBP27987 946 aa4.66□□□□□ -1.66
VPS29-205ENST00000548539 DGKQP52824 942 aa4.66□□□□□ -1.66
VPS29-205ENST00000548539 LMOD3Q0VAK6 560 aa4.66□□□□□ -1.66
VPS29-205ENST00000548539 G3BP1Q13283 466 aaKnown RBP eCLIP4.66□□□□□ -1.66
VPS29-205ENST00000548539 KCNJ12Q14500 433 aa4.66□□□□□ -1.66
VPS29-205ENST00000548539 DLGAP5Q15398 846 aa4.66□□□□□ -1.66
VPS29-205ENST00000548539 LRRC24Q50LG9 513 aa4.66□□□□□ -1.66
VPS29-205ENST00000548539 AKNAD1Q5T1N1 836 aa4.66□□□□□ -1.66
VPS29-205ENST00000548539 KIAA1614Q5VZ46 1190 aa4.66□□□□□ -1.66
VPS29-205ENST00000548539 C16orf89Q6UX73 402 aa4.66□□□□□ -1.66
VPS29-205ENST00000548539 ZNF788Q6ZQV5 615 aa4.66□□□□□ -1.66
VPS29-205ENST00000548539 PTCHD4Q6ZW05 846 aa4.66□□□□□ -1.66
VPS29-205ENST00000548539 PARS2Q7L3T8 475 aaKnown RBP4.66□□□□□ -1.66
VPS29-205ENST00000548539 ZNF551Q7Z340 670 aaPredicted RBP4.66□□□□□ -1.66
VPS29-205ENST00000548539 TMTC1Q8IUR5 882 aa4.66□□□□□ -1.66
VPS29-205ENST00000548539 TMEM57Q8N5G2 664 aa4.66□□□□□ -1.66
VPS29-205ENST00000548539 ESX1Q8N693 406 aa4.66□□□□□ -1.66
VPS29-205ENST00000548539 IL17REQ8NFR9 667 aa4.66□□□□□ -1.66
VPS29-205ENST00000548539 NPIPB3Q92617 1050 aa4.66□□□□□ -1.66
VPS29-205ENST00000548539 MPP4Q96JB8 637 aa4.66□□□□□ -1.66
VPS29-205ENST00000548539 LENG8Q96PV6 779 aaPredicted RBP4.66□□□□□ -1.66
VPS29-205ENST00000548539 RMI1Q9H9A7 625 aa4.66□□□□□ -1.66
VPS29-205ENST00000548539 USP29Q9HBJ7 922 aa4.66□□□□□ -1.66
VPS29-205ENST00000548539 G6PC2Q9NQR9 355 aa4.66□□□□□ -1.66
VPS29-205ENST00000548539 DUSP22Q9NRW4 184 aa4.66□□□□□ -1.66
VPS29-205ENST00000548539 LIN7CQ9NUP9 197 aaKnown RBP4.66□□□□□ -1.66
VPS29-205ENST00000548539 DLL3Q9NYJ7 618 aa4.66□□□□□ -1.66
VPS29-205ENST00000548539 PGAP2Q9UHJ9 254 aa4.66□□□□□ -1.66
VPS29-205ENST00000548539 GJD2Q9UKL4 321 aa4.66□□□□□ -1.66
VPS29-205ENST00000548539 TRPC5Q9UL62 973 aaPredicted RBP4.66□□□□□ -1.66
VPS29-205ENST00000548539 NFU1Q9UMS0 254 aa4.66□□□□□ -1.66
VPS29-205ENST00000548539 GABRQQ9UN88 632 aa4.66□□□□□ -1.66
VPS29-205ENST00000548539 SH2B3Q9UQQ2 575 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms