RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 KCNN4O15554 427 aa13.9□□□□□ -0.18
PTCH1-215ENST00000547672 CREB3O43889 395 aa13.9□□□□□ -0.18
PTCH1-215ENST00000547672 RNF40O75150 1001 aa13.9□□□□□ -0.18
PTCH1-215ENST00000547672 TTC4O95801 387 aa13.9□□□□□ -0.18
PTCH1-215ENST00000547672 SYF2O95926 243 aaKnown RBP13.9□□□□□ -0.18
PTCH1-215ENST00000547672 IGLV3-25P01717 112 aa13.9□□□□□ -0.18
PTCH1-215ENST00000547672 OR4Q2P0C623 313 aa13.9□□□□□ -0.18
PTCH1-215ENST00000547672 GOLGA6DP0CG33 693 aa13.9□□□□□ -0.18
PTCH1-215ENST00000547672 PECAM1P16284 738 aaPredicted RBP13.9□□□□□ -0.18
PTCH1-215ENST00000547672 RPL22P35268 128 aaKnown RBP13.9□□□□□ -0.18
PTCH1-215ENST00000547672 GLUD2P49448 558 aa13.9□□□□□ -0.18
PTCH1-215ENST00000547672 VPS41P49754 854 aa13.9□□□□□ -0.18
PTCH1-215ENST00000547672 GATMP50440 423 aa13.9□□□□□ -0.18
PTCH1-215ENST00000547672 CDK16Q00536 496 aa13.9□□□□□ -0.18
PTCH1-215ENST00000547672 NRG1Q02297 640 aaPredicted RBP13.9□□□□□ -0.18
PTCH1-215ENST00000547672 CBLBQ13191 982 aa13.9□□□□□ -0.18
PTCH1-215ENST00000547672 TCTN1Q2MV58 587 aa13.9□□□□□ -0.18
PTCH1-215ENST00000547672 CEP85LQ5SZL2 805 aa13.9□□□□□ -0.18
PTCH1-215ENST00000547672 AGBL2Q5U5Z8 902 aa13.9□□□□□ -0.18
PTCH1-215ENST00000547672 DDX53Q86TM3 631 aaKnown RBP13.9□□□□□ -0.18
PTCH1-215ENST00000547672 PDIK1LQ8N165 341 aa13.9□□□□□ -0.18
PTCH1-215ENST00000547672 ATP6V0D2Q8N8Y2 350 aa13.9□□□□□ -0.18
PTCH1-215ENST00000547672 SCAMP5Q8TAC9 235 aa13.9□□□□□ -0.18
PTCH1-215ENST00000547672 FAM76AQ8TAV0 307 aa13.9□□□□□ -0.18
PTCH1-215ENST00000547672 FBXO32Q969P5 355 aa13.9□□□□□ -0.18
PTCH1-215ENST00000547672 FAM118BQ9BPY3 351 aa13.9□□□□□ -0.18
PTCH1-215ENST00000547672 HERC2P3Q9BVR0 1158 aa13.9□□□□□ -0.18
PTCH1-215ENST00000547672 UBE2OQ9C0C9 1292 aaKnown RBP13.9□□□□□ -0.18
PTCH1-215ENST00000547672 TKTL2Q9H0I9 626 aa13.9□□□□□ -0.18
PTCH1-215ENST00000547672 ARHGEF4Q9NR80 690 aa13.9□□□□□ -0.18
PTCH1-215ENST00000547672 ARHGEF38Q9NXL2 777 aa13.9□□□□□ -0.18
PTCH1-215ENST00000547672 GOLGA6AQ9NYA3 693 aa13.9□□□□□ -0.18
PTCH1-215ENST00000547672 SAE1Q9UBE0 346 aaPredicted RBP13.9□□□□□ -0.18
PTCH1-215ENST00000547672 NT5C1B-RDH14C9J2C7 533 aa13.89□□□□□ -0.19
PTCH1-215ENST00000547672 POLR3GO15318 223 aaPredicted RBP13.89□□□□□ -0.19
PTCH1-215ENST00000547672 IRAK2O43187 625 aa13.89□□□□□ -0.19
PTCH1-215ENST00000547672 EFEMP2O95967 443 aa13.89□□□□□ -0.19
PTCH1-215ENST00000547672 APOEP02649 317 aa13.89□□□□□ -0.19
PTCH1-215ENST00000547672 FGBP02675 491 aa13.89□□□□□ -0.19
PTCH1-215ENST00000547672 CSH1P0DML2 217 aa13.89□□□□□ -0.19
PTCH1-215ENST00000547672 CSH2P0DML3 217 aa13.89□□□□□ -0.19
PTCH1-215ENST00000547672 CSF2RAP15509 400 aa13.89□□□□□ -0.19
PTCH1-215ENST00000547672 GOT1P17174 413 aa13.89□□□□□ -0.19
PTCH1-215ENST00000547672 AMPD1P23109 780 aa13.89□□□□□ -0.19
PTCH1-215ENST00000547672 ELF1P32519 619 aa13.89□□□□□ -0.19
PTCH1-215ENST00000547672 PHBP35232 272 aa13.89□□□□□ -0.19
PTCH1-215ENST00000547672 FDFT1P37268 417 aa13.89□□□□□ -0.19
PTCH1-215ENST00000547672 ALDH1A3P47895 512 aa13.89□□□□□ -0.19
PTCH1-215ENST00000547672 DSG1Q02413 1049 aa13.89□□□□□ -0.19
PTCH1-215ENST00000547672 DPYSQ14117 519 aa13.89□□□□□ -0.19
PTCH1-215ENST00000547672 STAT4Q14765 748 aa13.89□□□□□ -0.19
PTCH1-215ENST00000547672 VEPH1Q14D04 833 aa13.89□□□□□ -0.19
PTCH1-215ENST00000547672 HIF1AQ16665 826 aa13.89□□□□□ -0.19
PTCH1-215ENST00000547672 DDR2Q16832 855 aa13.89□□□□□ -0.19
PTCH1-215ENST00000547672 RAB6CQ53S08 254 aa13.89□□□□□ -0.19
PTCH1-215ENST00000547672 RNASEH2BQ5TBB1 312 aaKnown RBP13.89□□□□□ -0.19
PTCH1-215ENST00000547672 OTUD1Q5VV17 481 aaPredicted RBP13.89□□□□□ -0.19
PTCH1-215ENST00000547672 LRRC31Q6UY01 552 aa13.89□□□□□ -0.19
PTCH1-215ENST00000547672 TAC4Q86UU9 113 aa13.89□□□□□ -0.19
PTCH1-215ENST00000547672 UNC45BQ8IWX7 931 aa13.89□□□□□ -0.19
PTCH1-215ENST00000547672 RNF168Q8IYW5 571 aaPredicted RBP13.89□□□□□ -0.19
PTCH1-215ENST00000547672 TNS4Q8IZW8 715 aa13.89□□□□□ -0.19
PTCH1-215ENST00000547672 SLC39A11Q8N1S5 342 aa13.89□□□□□ -0.19
PTCH1-215ENST00000547672 ATAD1Q8NBU5 361 aa13.89□□□□□ -0.19
PTCH1-215ENST00000547672 STKLD1Q8NE28 680 aa13.89□□□□□ -0.19
PTCH1-215ENST00000547672 ZNF461Q8TAF7 563 aa13.89□□□□□ -0.19
PTCH1-215ENST00000547672 PPP1R2P1Q96PQ5 205 aa13.89□□□□□ -0.19
PTCH1-215ENST00000547672 QKIQ96PU8 341 aaKnown RBP eCLIP13.89□□□□□ -0.19
PTCH1-215ENST00000547672 RBM15Q96T37 977 aaKnown RBP eCLIP13.89□□□□□ -0.19
PTCH1-215ENST00000547672 YME1L1Q96TA2 773 aa13.89□□□□□ -0.19
PTCH1-215ENST00000547672 VAT1Q99536 393 aa13.89□□□□□ -0.19
PTCH1-215ENST00000547672 SEPT5Q99719 369 aaPredicted RBP13.89□□□□□ -0.19
PTCH1-215ENST00000547672 RAB6CQ9H0N0 254 aa13.89□□□□□ -0.19
PTCH1-215ENST00000547672 MTIF3Q9H2K0 278 aaKnown RBP13.89□□□□□ -0.19
PTCH1-215ENST00000547672 ADAM7Q9H2U9 754 aa13.89□□□□□ -0.19
PTCH1-215ENST00000547672 USP29Q9HBJ7 922 aa13.89□□□□□ -0.19
PTCH1-215ENST00000547672 VPS18Q9P253 973 aa13.89□□□□□ -0.19
PTCH1-215ENST00000547672 CDY1Q9Y6F8 540 aa13.89□□□□□ -0.19
PTCH1-215ENST00000547672 SCN5AQ14524 2016 aa13.89□□□□□ -0.19
PTCH1-215ENST00000547672 PATJQ8NI35 1801 aa13.89□□□□□ -0.19
PTCH1-215ENST00000547672 NLRC5Q86WI3 1866 aa13.89□□□□□ -0.19
PTCH1-215ENST00000547672 A0A1W2PQH9 124 aa13.88□□□□□ -0.19
PTCH1-215ENST00000547672 H0YGN5 161 aa13.88□□□□□ -0.19
PTCH1-215ENST00000547672 AP3B1O00203 1094 aa13.88□□□□□ -0.19
PTCH1-215ENST00000547672 ALOX15BO15296 676 aa13.88□□□□□ -0.19
PTCH1-215ENST00000547672 RIPK2O43353 540 aa13.88□□□□□ -0.19
PTCH1-215ENST00000547672 OPHN1O60890 802 aa13.88□□□□□ -0.19
PTCH1-215ENST00000547672 URODP06132 367 aa13.88□□□□□ -0.19
PTCH1-215ENST00000547672 ABHD2P08910 425 aa13.88□□□□□ -0.19
PTCH1-215ENST00000547672 OR1D2P34982 312 aa13.88□□□□□ -0.19
PTCH1-215ENST00000547672 MAGEA4P43358 317 aa13.88□□□□□ -0.19
PTCH1-215ENST00000547672 ATXN1P54253 815 aaKnown RBP13.88□□□□□ -0.19
PTCH1-215ENST00000547672 WDR5P61964 334 aaKnown RBP13.88□□□□□ -0.19
PTCH1-215ENST00000547672 IFRD2Q12894 506 aaPredicted RBP13.88□□□□□ -0.19
PTCH1-215ENST00000547672 DUSP4Q13115 394 aa13.88□□□□□ -0.19
PTCH1-215ENST00000547672 SEMA3BQ13214 749 aa13.88□□□□□ -0.19
PTCH1-215ENST00000547672 PLD1Q13393 1074 aa13.88□□□□□ -0.19
PTCH1-215ENST00000547672 EIF4EBP2Q13542 120 aaPredicted RBP13.88□□□□□ -0.19
PTCH1-215ENST00000547672 TAF12Q16514 161 aa13.88□□□□□ -0.19
PTCH1-215ENST00000547672 RTP2Q5QGT7 225 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms