RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 F8W810 466 aa16.87■□□□□ 0.29
COL4A1-204ENST00000543140 H3BRJ5 948 aa16.87■□□□□ 0.29
COL4A1-204ENST00000543140 I6L893 689 aaPredicted RBP16.87■□□□□ 0.29
COL4A1-204ENST00000543140 SUN1O94901 812 aa16.87■□□□□ 0.29
COL4A1-204ENST00000543140 FAM163BP0C2L3 166 aa16.87■□□□□ 0.29
COL4A1-204ENST00000543140 PRKAR2AP13861 404 aaKnown RBP16.87■□□□□ 0.29
COL4A1-204ENST00000543140 TSHRP16473 764 aa16.87■□□□□ 0.29
COL4A1-204ENST00000543140 LPIN1Q14693 890 aa16.87■□□□□ 0.29
COL4A1-204ENST00000543140 ANKRD20A2Q5SQ80 823 aa16.87■□□□□ 0.29
COL4A1-204ENST00000543140 ANKRD20A1Q5TYW2 823 aa16.87■□□□□ 0.29
COL4A1-204ENST00000543140 ANKRD20A3Q5VUR7 823 aa16.87■□□□□ 0.29
COL4A1-204ENST00000543140 ZNF534Q76KX8 674 aa16.87■□□□□ 0.29
COL4A1-204ENST00000543140 SLC44A1Q8WWI5 657 aa16.87■□□□□ 0.29
COL4A1-204ENST00000543140 PLAC1Q9HBJ0 212 aa16.87■□□□□ 0.29
COL4A1-204ENST00000543140 CDH9Q9ULB4 789 aa16.87■□□□□ 0.29
COL4A1-204ENST00000543140 NOD1Q9Y239 953 aa16.87■□□□□ 0.29
COL4A1-204ENST00000543140 TTLL3Q9Y4R7 772 aa16.87■□□□□ 0.29
COL4A1-204ENST00000543140 NUP205Q92621 2012 aa16.86■□□□□ 0.29
COL4A1-204ENST00000543140 EEF2KO00418 725 aaKnown RBP16.86■□□□□ 0.29
COL4A1-204ENST00000543140 CPP00450 1065 aa16.86■□□□□ 0.29
COL4A1-204ENST00000543140 MT-ND3P03897 115 aa16.86■□□□□ 0.29
COL4A1-204ENST00000543140 ADRA1DP25100 572 aa16.86■□□□□ 0.29
COL4A1-204ENST00000543140 YY1P25490 414 aa16.86■□□□□ 0.29
COL4A1-204ENST00000543140 RPL9P32969 192 aaKnown RBP16.86■□□□□ 0.29
COL4A1-204ENST00000543140 MAGEA6P43360 314 aa16.86■□□□□ 0.29
COL4A1-204ENST00000543140 BNIPLQ7Z465 357 aa16.86■□□□□ 0.29
COL4A1-204ENST00000543140 MRPL10Q7Z7H8 261 aaKnown RBP16.86■□□□□ 0.29
COL4A1-204ENST00000543140 TCP10LQ8TDR4 215 aa16.86■□□□□ 0.29
COL4A1-204ENST00000543140 MYLPFQ96A32 169 aa16.86■□□□□ 0.29
COL4A1-204ENST00000543140 SERAC1Q96JX3 654 aa16.86■□□□□ 0.29
COL4A1-204ENST00000543140 DDIT4Q9NX09 232 aa16.86■□□□□ 0.29
COL4A1-204ENST00000543140 SLC17A7Q9P2U7 560 aa16.86■□□□□ 0.29
COL4A1-204ENST00000543140 FBXO21O94952 628 aa16.86■□□□□ 0.29
COL4A1-204ENST00000543140 BDNFP23560 247 aa16.86■□□□□ 0.29
COL4A1-204ENST00000543140 ADRA1BP35368 520 aa16.86■□□□□ 0.29
COL4A1-204ENST00000543140 SLC18A1P54219 525 aa16.86■□□□□ 0.29
COL4A1-204ENST00000543140 MTFR1Q15390 333 aa16.86■□□□□ 0.29
COL4A1-204ENST00000543140 SEPT7Q16181 437 aaKnown RBP16.86■□□□□ 0.29
COL4A1-204ENST00000543140 LACTB2Q53H82 288 aaPredicted RBP16.86■□□□□ 0.29
COL4A1-204ENST00000543140 RFX8Q6ZV50 586 aa16.86■□□□□ 0.29
COL4A1-204ENST00000543140 SMARCD1Q96GM5 515 aa16.86■□□□□ 0.29
COL4A1-204ENST00000543140 FRMD8Q9BZ67 464 aaPredicted RBP16.86■□□□□ 0.29
COL4A1-204ENST00000543140 ACTR5Q9H9F9 607 aaPredicted RBP16.86■□□□□ 0.29
COL4A1-204ENST00000543140 RCOR3Q9P2K3 495 aaPredicted RBP16.86■□□□□ 0.29
COL4A1-204ENST00000543140 RNF103O00237 685 aa16.85■□□□□ 0.29
COL4A1-204ENST00000543140 UGT1A9O60656 530 aa16.85■□□□□ 0.29
COL4A1-204ENST00000543140 LTFP02788 710 aa16.85■□□□□ 0.29
COL4A1-204ENST00000543140 ITGB1P05556 798 aa16.85■□□□□ 0.29
COL4A1-204ENST00000543140 PCSK1P29120 753 aa16.85■□□□□ 0.29
COL4A1-204ENST00000543140 CRADDP78560 199 aa16.85■□□□□ 0.29
COL4A1-204ENST00000543140 UNC5AQ6ZN44 842 aa16.85■□□□□ 0.29
COL4A1-204ENST00000543140 PSTKQ8IV42 348 aaKnown RBP16.85■□□□□ 0.29
COL4A1-204ENST00000543140 CCDC63Q8NA47 563 aa16.85■□□□□ 0.29
COL4A1-204ENST00000543140 COLGALT1Q8NBJ5 622 aa16.85■□□□□ 0.29
COL4A1-204ENST00000543140 MCUQ8NE86 351 aa16.85■□□□□ 0.29
COL4A1-204ENST00000543140 P2RY11Q96G91 374 aa16.85■□□□□ 0.29
COL4A1-204ENST00000543140 TMEM209Q96SK2 561 aa16.85■□□□□ 0.29
COL4A1-204ENST00000543140 PRDM12Q9H4Q4 367 aa16.85■□□□□ 0.29
COL4A1-204ENST00000543140 UGT1A7Q9HAW7 530 aa16.85■□□□□ 0.29
COL4A1-204ENST00000543140 UGT1A10Q9HAW8 530 aa16.85■□□□□ 0.29
COL4A1-204ENST00000543140 UGT1A8Q9HAW9 530 aa16.85■□□□□ 0.29
COL4A1-204ENST00000543140 WDR6Q9NNW5 1121 aaKnown RBP16.85■□□□□ 0.29
COL4A1-204ENST00000543140 CNGB3Q9NQW8 809 aa16.85■□□□□ 0.29
COL4A1-204ENST00000543140 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.85■□□□□ 0.29
COL4A1-204ENST00000543140 A0A0A0MRY4 1105 aa16.85■□□□□ 0.29
COL4A1-204ENST00000543140 A0A0U1RQF3 1178 aa16.85■□□□□ 0.29
COL4A1-204ENST00000543140 IQANK1A0A1B0GTG1 560 aa16.85■□□□□ 0.29
COL4A1-204ENST00000543140 HHLA1C9JL84 531 aa16.85■□□□□ 0.29
COL4A1-204ENST00000543140 SPAG6O75602 509 aa16.85■□□□□ 0.29
COL4A1-204ENST00000543140 ODC1P11926 461 aa16.85■□□□□ 0.29
COL4A1-204ENST00000543140 PDK4Q16654 411 aa16.85■□□□□ 0.29
COL4A1-204ENST00000543140 RAB41Q5JT25 222 aa16.85■□□□□ 0.29
COL4A1-204ENST00000543140 TRMT10BQ6PF06 316 aaKnown RBP16.85■□□□□ 0.29
COL4A1-204ENST00000543140 C4orf22Q6V702 233 aa16.85■□□□□ 0.29
COL4A1-204ENST00000543140 PDCD7Q8N8D1 485 aaKnown RBP16.85■□□□□ 0.29
COL4A1-204ENST00000543140 BANPQ8N9N5 519 aa16.85■□□□□ 0.29
COL4A1-204ENST00000543140 LRRC8CQ8TDW0 803 aa16.85■□□□□ 0.29
COL4A1-204ENST00000543140 SIGLEC10Q96LC7 697 aa16.85■□□□□ 0.29
COL4A1-204ENST00000543140 SPATA13Q96N96 652 aa16.85■□□□□ 0.29
COL4A1-204ENST00000543140 ALG13Q9NP73 1137 aaKnown RBP16.85■□□□□ 0.29
COL4A1-204ENST00000543140 SMYD2Q9NRG4 433 aa16.85■□□□□ 0.29
COL4A1-204ENST00000543140 TMLHEQ9NVH6 421 aa16.85■□□□□ 0.29
COL4A1-204ENST00000543140 PHTF1Q9UMS5 762 aa16.85■□□□□ 0.29
COL4A1-204ENST00000543140 ARL2BPQ9Y2Y0 163 aa16.85■□□□□ 0.29
COL4A1-204ENST00000543140 SNX10Q9Y5X0 201 aa16.85■□□□□ 0.29
COL4A1-204ENST00000543140 ZNF623O75123 536 aa16.84■□□□□ 0.29
COL4A1-204ENST00000543140 ZWINTO95229 277 aa16.84■□□□□ 0.29
COL4A1-204ENST00000543140 C1QAP02745 245 aa16.84■□□□□ 0.29
COL4A1-204ENST00000543140 DPYSQ14117 519 aa16.84■□□□□ 0.29
COL4A1-204ENST00000543140 BSPRYQ5W0U4 402 aa16.84■□□□□ 0.29
COL4A1-204ENST00000543140 RPAINQ86UA6 219 aa16.84■□□□□ 0.29
COL4A1-204ENST00000543140 RMDN2Q96LZ7 410 aa16.84■□□□□ 0.29
COL4A1-204ENST00000543140 RNF186Q9NXI6 227 aa16.84■□□□□ 0.29
COL4A1-204ENST00000543140 PTCH2Q9Y6C5 1203 aa16.84■□□□□ 0.29
COL4A1-204ENST00000543140 TTC3P53804 2025 aa16.84■□□□□ 0.29
COL4A1-204ENST00000543140 TMEM88BA6NKF7 163 aa16.84■□□□□ 0.29
COL4A1-204ENST00000543140 HACD1B0YJ81 288 aa16.84■□□□□ 0.29
COL4A1-204ENST00000543140 KCNK1O00180 336 aa16.84■□□□□ 0.29
COL4A1-204ENST00000543140 TOMM70O94826 608 aa16.84■□□□□ 0.29
COL4A1-204ENST00000543140 UBOX5O94941 541 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms