RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 GINS2Q9Y248 185 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 HEY1Q9Y5J3 304 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 SPAG7O75391 227 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 THP07101 528 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 PDGFRBP09619 1106 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 TKTP29401 623 aaKnown RBP10.19□□□□□ -0.78
SS18-205ENST00000542420 ETV4P43268 484 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 GAD2Q05329 585 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 DPYSQ14117 519 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 SLC1A5Q15758 541 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 FAM91A1Q658Y4 838 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 TLDC1Q6P9B6 456 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 CYB5D1Q6P9G0 228 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 PAQR9Q6ZVX9 377 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 ZNF534Q76KX8 674 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 MARK2Q7KZI7 788 aaKnown RBP10.19□□□□□ -0.78
SS18-205ENST00000542420 SERINC5Q86VE9 423 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 IFNL1Q8IU54 200 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 ZNF276Q8N554 614 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 RNF139Q8WU17 664 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 INPP5DQ92835 1189 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 SENP8Q96LD8 212 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 TMEM237Q96Q45 408 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 VAT1Q99536 393 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 SYT15Q9BQS2 421 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 SAR1AQ9NR31 198 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 ARHGEF4Q9NR80 690 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 ABCF3Q9NUQ8 709 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 GPATCH2LQ9NWQ4 482 aa10.19□□□□□ -0.78
SS18-205ENST00000542420 A0A1W2PPM1 405 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 LPXNO60711 386 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 UBOX5O94941 541 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 CYBAP13498 195 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 SLC8A1P32418 973 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 RASSF2P50749 326 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 HUNKP57058 714 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 DAOAP59103 153 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 NCALDP61601 193 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 ADIGQ0VDE8 80 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 SREBF2Q12772 1141 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 SEMA3BQ13214 749 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 MAPRE1Q15691 268 aaKnown RBP10.18□□□□□ -0.78
SS18-205ENST00000542420 ZKSCAN8Q15776 578 aaPredicted RBP10.18□□□□□ -0.78
SS18-205ENST00000542420 ARL13BQ3SXY8 428 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 KBTBD12Q3ZCT8 623 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 RAB6CQ53S08 254 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 PPP6R3Q5H9R7 873 aaPredicted RBP10.18□□□□□ -0.78
SS18-205ENST00000542420 PRAMEF19Q5SWL8 479 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 OTUD1Q5VV17 481 aaPredicted RBP10.18□□□□□ -0.78
SS18-205ENST00000542420 MFSD14CQ5VZR4 134 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 ASRGL1Q7L266 308 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 PARP9Q8IXQ6 854 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 C4orf33Q8N1A6 199 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 C10orf82Q8WW14 230 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 PPP1R2P1Q96PQ5 205 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 RAB3IPQ96QF0 476 aaPredicted RBP10.18□□□□□ -0.78
SS18-205ENST00000542420 SIKE1Q9BRV8 207 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 APOL6Q9BWW8 343 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 RAB6CQ9H0N0 254 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 RNF39Q9H2S5 420 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 ARHGEF3Q9NR81 526 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 MOCS1Q9NZB8 636 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 CDY2AQ9Y6F7 541 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 PLXNA3P51805 1871 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 PIK3R2O00459 728 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 TRAFD1O14545 582 aaPredicted RBP10.18□□□□□ -0.78
SS18-205ENST00000542420 DCLK1O15075 740 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 BIRC5O15392 142 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 PSMD3O43242 534 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 WFS1O76024 890 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 SLC10A3P09131 477 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 MX2P20592 715 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 CST5P28325 142 aaPredicted RBP10.18□□□□□ -0.78
SS18-205ENST00000542420 PSMC4P43686 418 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 DEUP1Q05D60 604 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 SLC10A2Q12908 348 aaPredicted RBP10.18□□□□□ -0.78
SS18-205ENST00000542420 SNCBQ16143 134 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 SPRED3Q2MJR0 410 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 ANKRD20A2Q5SQ80 823 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 ANKRD20A1Q5TYW2 823 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 ANKRD20A3Q5VUR7 823 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 FAM35AQ86V20 835 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 IGDCC3Q8IVU1 814 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 KLHDC8BQ8IXV7 354 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 CCDC185Q8N715 623 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 ARRDC4Q8NCT1 418 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 TCP10LQ8TDR4 215 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 CDKL2Q92772 493 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 ITFG2Q969R8 447 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 PGBD4Q96DM1 585 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 SMARCD1Q96GM5 515 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 C10orf88Q9H8K7 445 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 DDX43Q9NXZ2 648 aaKnown RBP10.18□□□□□ -0.78
SS18-205ENST00000542420 KLK14Q9P0G3 267 aa10.18□□□□□ -0.78
SS18-205ENST00000542420 DNAJC6O75061 913 aa10.17□□□□□ -0.78
SS18-205ENST00000542420 BANF1O75531 89 aa10.17□□□□□ -0.78
SS18-205ENST00000542420 UNC5CO95185 931 aa10.17□□□□□ -0.78
SS18-205ENST00000542420 APRTP07741 180 aa10.17□□□□□ -0.78
SS18-205ENST00000542420 ODC1P11926 461 aa10.17□□□□□ -0.78
SS18-205ENST00000542420 NQO1P15559 274 aaKnown RBP10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms