RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 TESMINQ9Y4I5 508 aa12.78□□□□□ -0.36
USP3-203ENST00000538686 CAMTA1Q9Y6Y1 1673 aa12.78□□□□□ -0.36
USP3-203ENST00000538686 CLUHO75153 1309 aa12.78□□□□□ -0.36
USP3-203ENST00000538686 MAN1A2O60476 641 aa12.77□□□□□ -0.36
USP3-203ENST00000538686 GPC4O75487 556 aa12.77□□□□□ -0.36
USP3-203ENST00000538686 KRT18P05783 430 aaKnown RBP12.77□□□□□ -0.36
USP3-203ENST00000538686 INHBAP08476 426 aa12.77□□□□□ -0.36
USP3-203ENST00000538686 KITP10721 976 aa12.77□□□□□ -0.36
USP3-203ENST00000538686 COX4I1P13073 169 aa12.77□□□□□ -0.36
USP3-203ENST00000538686 NCAM1P13591 858 aa12.77□□□□□ -0.36
USP3-203ENST00000538686 FOSL1P15407 271 aa12.77□□□□□ -0.36
USP3-203ENST00000538686 ZNF182P17025 639 aaPredicted RBP12.77□□□□□ -0.36
USP3-203ENST00000538686 GRIK1P39086 918 aa12.77□□□□□ -0.36
USP3-203ENST00000538686 NAMPTP43490 491 aa12.77□□□□□ -0.36
USP3-203ENST00000538686 CDH15P55291 814 aa12.77□□□□□ -0.36
USP3-203ENST00000538686 NLRP11P59045 1033 aaKnown RBP12.77□□□□□ -0.36
USP3-203ENST00000538686 EIF3EP60228 445 aaKnown RBP12.77□□□□□ -0.36
USP3-203ENST00000538686 ECT2LQ008S8 904 aa12.77□□□□□ -0.36
USP3-203ENST00000538686 PUM3Q15397 648 aaKnown RBP12.77□□□□□ -0.36
USP3-203ENST00000538686 NPTX1Q15818 432 aa12.77□□□□□ -0.36
USP3-203ENST00000538686 PCSK7Q16549 785 aa12.77□□□□□ -0.36
USP3-203ENST00000538686 PPP6R3Q5H9R7 873 aaPredicted RBP12.77□□□□□ -0.36
USP3-203ENST00000538686 CCNJQ5T5M9 372 aa12.77□□□□□ -0.36
USP3-203ENST00000538686 RNASEH2BQ5TBB1 312 aaKnown RBP12.77□□□□□ -0.36
USP3-203ENST00000538686 BNC2Q6ZN30 1099 aaPredicted RBP12.77□□□□□ -0.36
USP3-203ENST00000538686 GPBP1Q86WP2 473 aa12.77□□□□□ -0.36
USP3-203ENST00000538686 TBCKQ8TEA7 893 aa12.77□□□□□ -0.36
USP3-203ENST00000538686 TFB1MQ8WVM0 346 aaKnown RBP12.77□□□□□ -0.36
USP3-203ENST00000538686 CELF1Q92879 486 aaKnown RBP12.77□□□□□ -0.36
USP3-203ENST00000538686 KLF6Q99612 283 aaPredicted RBP12.77□□□□□ -0.36
USP3-203ENST00000538686 ACP6Q9NPH0 428 aa12.77□□□□□ -0.36
USP3-203ENST00000538686 CNNM1Q9NRU3 951 aa12.77□□□□□ -0.36
USP3-203ENST00000538686 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.77□□□□□ -0.36
USP3-203ENST00000538686 UBA2Q9UBT2 640 aaPredicted RBP12.77□□□□□ -0.36
USP3-203ENST00000538686 TMEM2Q9UHN6 1383 aa12.77□□□□□ -0.36
USP3-203ENST00000538686 LAMB2P55268 1798 aa12.77□□□□□ -0.36
USP3-203ENST00000538686 B4GALT4O60513 344 aa12.77□□□□□ -0.37
USP3-203ENST00000538686 BCAS2O75934 225 aaPredicted RBP12.77□□□□□ -0.37
USP3-203ENST00000538686 GLRA2P23416 452 aa12.77□□□□□ -0.37
USP3-203ENST00000538686 GRK2P25098 689 aa12.77□□□□□ -0.37
USP3-203ENST00000538686 TAGLNQ01995 201 aaKnown RBP12.77□□□□□ -0.37
USP3-203ENST00000538686 PMS2P3Q13401 168 aa12.77□□□□□ -0.37
USP3-203ENST00000538686 LGSNQ5TDP6 509 aa12.77□□□□□ -0.37
USP3-203ENST00000538686 PDPK2PQ6A1A2 396 aa12.77□□□□□ -0.37
USP3-203ENST00000538686 FRMD7Q6ZUT3 714 aa12.77□□□□□ -0.37
USP3-203ENST00000538686 ZC3H7AQ8IWR0 971 aaKnown RBP12.77□□□□□ -0.37
USP3-203ENST00000538686 PACRGLQ8N7B6 248 aa12.77□□□□□ -0.37
USP3-203ENST00000538686 FAM47BQ8NA70 645 aa12.77□□□□□ -0.37
USP3-203ENST00000538686 LILRB1Q8NHL6 650 aaPredicted RBP12.77□□□□□ -0.37
USP3-203ENST00000538686 ZUFSPQ96AP4 578 aa12.77□□□□□ -0.37
USP3-203ENST00000538686 PSKH2Q96QS6 385 aa12.77□□□□□ -0.37
USP3-203ENST00000538686 EBF4Q9BQW3 602 aa12.77□□□□□ -0.37
USP3-203ENST00000538686 TRIT1Q9H3H1 467 aaKnown RBP12.77□□□□□ -0.37
USP3-203ENST00000538686 MRGBPQ9NV56 204 aa12.77□□□□□ -0.37
USP3-203ENST00000538686 NIP7Q9Y221 180 aaKnown RBP eCLIP12.77□□□□□ -0.37
USP3-203ENST00000538686 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.77□□□□□ -0.37
USP3-203ENST00000538686 BAZ2BQ9UIF8 2168 aaKnown RBP12.77□□□□□ -0.37
USP3-203ENST00000538686 TMX2-CTNND1H3BSU7 103 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 POLR1CO15160 346 aaPredicted RBP12.76□□□□□ -0.37
USP3-203ENST00000538686 PSTPIP1O43586 416 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 SERPINB2P05120 415 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 KRT8P05787 483 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 UGT2B4P06133 528 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 PLA2G4BP0C869 781 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 MYF6P23409 242 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 EPHA3P29320 983 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 IDUAP35475 653 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 NAPAP54920 295 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 LRIT3Q3SXY7 679 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 AASDHQ4L235 1098 aaPredicted RBP12.76□□□□□ -0.37
USP3-203ENST00000538686 PERM1Q5SV97 790 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 TEDDM1Q5T9Z0 273 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 ARMC8Q8IUR7 673 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 PALM2Q8IXS6 379 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 GRIN3AQ8TCU5 1115 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 SLC44A1Q8WWI5 657 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 TP53INP1Q96A56 240 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 VPS35Q96QK1 796 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 COQ10BQ9H8M1 238 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 POLR1BQ9H9Y6 1135 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 FANCEQ9HB96 536 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 MRPL40Q9NQ50 206 aaKnown RBP12.76□□□□□ -0.37
USP3-203ENST00000538686 NXF1Q9UBU9 619 aaKnown RBP12.76□□□□□ -0.37
USP3-203ENST00000538686 MARCOQ9UEW3 520 aaPredicted RBP12.76□□□□□ -0.37
USP3-203ENST00000538686 ATPIF1Q9UII2 106 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 EIF3LQ9Y262 564 aaKnown RBP12.76□□□□□ -0.37
USP3-203ENST00000538686 DRG1Q9Y295 367 aaKnown RBP12.76□□□□□ -0.37
USP3-203ENST00000538686 TOGARAM1Q9Y4F4 1720 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 ALS2Q96Q42 1657 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 MAGEB6P1A0A0J9YX57 407 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 ISPDA4D126 451 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 MTSS1O43312 755 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 HTRA2O43464 458 aaPredicted RBP12.76□□□□□ -0.37
USP3-203ENST00000538686 DDHD2O94830 711 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 RALAP11233 206 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 GYS1P13807 737 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 LEPRP48357 1165 aaKnown RBP12.76□□□□□ -0.37
USP3-203ENST00000538686 SLC26A2P50443 739 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 ARSEP51690 589 aa12.76□□□□□ -0.37
USP3-203ENST00000538686 GPS1Q13098 491 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms