RNA–Protein interactions for RNA: ENST00000534442.5

ECHDC1-223, Transcript of ethylmalonyl-CoA decarboxylase 1, human

TSL 5

Gene ECHDC1, Length 577 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ECHDC1-223	ENST00000534442	PMS2P1	A4D2B8	440 aa		5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	TCAF2	A6NFQ2	919 aa		5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	C4orf47	A7E2U8	309 aa		5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	CXorf49	A8MYA2	514 aa	Predicted RBP	5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	C5orf67	F2Z3F1	127 aa		5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	SLC26A4	O43511	780 aa		5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	DUSP11	O75319	330 aa	Known RBP	5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	STC2	O76061	302 aa		5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	IL18RAP	O95256	599 aa		5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	CSRP1	P21291	193 aa	Known RBP	5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	ABCB4	P21439	1286 aa		5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	PPM1A	P35813	382 aa		5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	KCNJ4	P48050	445 aa		5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	PLCD1	P51178	756 aa		5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	AFF3	P51826	1226 aa	Known RBP	5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	BTK	Q06187	659 aa		5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	DAG1	Q14118	895 aa		5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	SIM2	Q14190	667 aa	Predicted RBP	5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	VMAC	Q2NL98	169 aa		5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	TUBB8	Q3ZCM7	444 aa		5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	ZNF385B	Q569K4	471 aa		5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	C3orf38	Q5JPI3	329 aa		5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	KLHDC7A	Q5VTJ3	777 aa		5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	ANKS6	Q68DC2	871 aa		5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	APOBEC3H	Q6NTF7	200 aa	Known RBP	5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	HIBCH	Q6NVY1	386 aa	Predicted RBP	5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	SRRM1	Q8IYB3	904 aa	Known RBP	5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	LINC01356	Q8N9X3	169 aa		5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	DEFB124	Q8NES8	71 aa		5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	OR10H5	Q8NGA6	315 aa		5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	ATP8B4	Q8TF62	1192 aa		5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	TNPO1	Q92973	898 aa	Known RBP	5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	TEKT1	Q969V4	418 aa		5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	SUCLG2	Q96I99	432 aa		5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	YME1L1	Q96TA2	773 aa		5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	NDC1	Q9BTX1	674 aa		5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	MRI1	Q9BV20	369 aa		5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	SELENOO	Q9BVL4	669 aa		5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	VPS11	Q9H270	941 aa		5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	SMURF2	Q9HAU4	748 aa		5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	GPR108	Q9NPR9	543 aa		5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	CNNM1	Q9NRU3	951 aa		5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	TMOD4	Q9NZQ9	345 aa		5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	CDC23	Q9UJX2	597 aa		5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	SVIL	O95425	2214 aa		5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	NBEAL2	Q6ZNJ1	2754 aa		5.21	□□□□□ -1.58
ECHDC1-223	ENST00000534442	MROH6	A6NGR9	719 aa		5.2	□□□□□ -1.58
ECHDC1-223	ENST00000534442	SNAP23	O00161	211 aa		5.2	□□□□□ -1.58
ECHDC1-223	ENST00000534442	PER2	O15055	1255 aa		5.2	□□□□□ -1.58
ECHDC1-223	ENST00000534442	PIP5K1C	O60331	668 aa		5.2	□□□□□ -1.58
ECHDC1-223	ENST00000534442	NBN	O60934	754 aa		5.2	□□□□□ -1.58
ECHDC1-223	ENST00000534442	SLC43A1	O75387	559 aa		5.2	□□□□□ -1.58
ECHDC1-223	ENST00000534442	FGF18	O76093	207 aa		5.2	□□□□□ -1.58
ECHDC1-223	ENST00000534442	CNOT4	O95628	575 aa	Known RBP	5.2	□□□□□ -1.58
ECHDC1-223	ENST00000534442	MTHFD1	P11586	935 aa	Known RBP	5.2	□□□□□ -1.58
ECHDC1-223	ENST00000534442	TYRP1	P17643	537 aa		5.2	□□□□□ -1.58
ECHDC1-223	ENST00000534442	ATP5J	P18859	108 aa		5.2	□□□□□ -1.58
ECHDC1-223	ENST00000534442	ITPKB	P27987	946 aa		5.2	□□□□□ -1.58
ECHDC1-223	ENST00000534442	HAL	P42357	657 aa		5.2	□□□□□ -1.58
ECHDC1-223	ENST00000534442	PHKA1	P46020	1223 aa		5.2	□□□□□ -1.58
ECHDC1-223	ENST00000534442	NPEPPS	P55786	919 aa		5.2	□□□□□ -1.58
ECHDC1-223	ENST00000534442	LINC00310	P59036	64 aa		5.2	□□□□□ -1.58
ECHDC1-223	ENST00000534442	PSMC6	P62333	389 aa		5.2	□□□□□ -1.58
ECHDC1-223	ENST00000534442	BEX3	Q00994	111 aa		5.2	□□□□□ -1.58
ECHDC1-223	ENST00000534442	FAM214A	Q32MH5	1076 aa		5.2	□□□□□ -1.58
ECHDC1-223	ENST00000534442	DAB2IP	Q5VWQ8	1189 aa		5.2	□□□□□ -1.58
ECHDC1-223	ENST00000534442	SYCE2	Q6PIF2	218 aa		5.2	□□□□□ -1.58
ECHDC1-223	ENST00000534442	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	5.2	□□□□□ -1.58
ECHDC1-223	ENST00000534442	ZNF804A	Q7Z570	1209 aa		5.2	□□□□□ -1.58
ECHDC1-223	ENST00000534442	GPR135	Q8IZ08	494 aa		5.2	□□□□□ -1.58
ECHDC1-223	ENST00000534442	MYOCD	Q8IZQ8	938 aa		5.2	□□□□□ -1.58
ECHDC1-223	ENST00000534442	NMD3	Q96D46	503 aa	Known RBP	5.2	□□□□□ -1.58
ECHDC1-223	ENST00000534442	ZC3H10	Q96K80	434 aa	Known RBP	5.2	□□□□□ -1.58
ECHDC1-223	ENST00000534442	COLEC11	Q9BWP8	271 aa		5.2	□□□□□ -1.58
ECHDC1-223	ENST00000534442	ARRDC1-AS1	Q9H2J1	176 aa		5.2	□□□□□ -1.58
ECHDC1-223	ENST00000534442	ARFGAP3	Q9NP61	516 aa		5.2	□□□□□ -1.58
ECHDC1-223	ENST00000534442	SLAMF7	Q9NQ25	335 aa		5.2	□□□□□ -1.58
ECHDC1-223	ENST00000534442	SACM1L	Q9NTJ5	587 aa		5.2	□□□□□ -1.58
ECHDC1-223	ENST00000534442	ZDHHC8	Q9ULC8	765 aa		5.2	□□□□□ -1.58
ECHDC1-223	ENST00000534442	PADI4	Q9UM07	663 aa		5.2	□□□□□ -1.58
ECHDC1-223	ENST00000534442	SLC45A2	Q9UMX9	530 aa		5.2	□□□□□ -1.58
ECHDC1-223	ENST00000534442	MED16	Q9Y2X0	877 aa		5.2	□□□□□ -1.58
ECHDC1-223	ENST00000534442	PCDHGB2	Q9Y5G2	931 aa		5.2	□□□□□ -1.58
ECHDC1-223	ENST00000534442	MIA3	Q5JRA6	1907 aa		5.2	□□□□□ -1.58
ECHDC1-223	ENST00000534442	CCDC168	Q8NDH2	2452 aa		5.19	□□□□□ -1.58
ECHDC1-223	ENST00000534442	JMJD1C	Q15652	2540 aa		5.19	□□□□□ -1.58
ECHDC1-223	ENST00000534442	SPAAR	A0A1B0GVQ0	90 aa		5.19	□□□□□ -1.58
ECHDC1-223	ENST00000534442	KIAA0391	O15091	583 aa	Known RBP	5.19	□□□□□ -1.58
ECHDC1-223	ENST00000534442	CTAGE5	O15320	804 aa		5.19	□□□□□ -1.58
ECHDC1-223	ENST00000534442	HOXA3	O43365	443 aa	Predicted RBP	5.19	□□□□□ -1.58
ECHDC1-223	ENST00000534442	STRN	O43815	780 aa		5.19	□□□□□ -1.58
ECHDC1-223	ENST00000534442	B4GALT3	O60512	393 aa		5.19	□□□□□ -1.58
ECHDC1-223	ENST00000534442	ABHD16A	O95870	558 aa		5.19	□□□□□ -1.58
ECHDC1-223	ENST00000534442	RB1	P06400	928 aa		5.19	□□□□□ -1.58
ECHDC1-223	ENST00000534442	SUPT20HL2	P0C7V6	817 aa		5.19	□□□□□ -1.58
ECHDC1-223	ENST00000534442	DNAJB1	P25685	340 aa		5.19	□□□□□ -1.58
ECHDC1-223	ENST00000534442	TEC	P42680	631 aa		5.19	□□□□□ -1.58

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