RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 C1orf112Q9NSG2 853 aa4.63□□□□□ -1.67
CD44-235ENST00000532339 NDRG4Q9ULP0 352 aaKnown RBP4.63□□□□□ -1.67
CD44-235ENST00000532339 ADAMTS5Q9UNA0 930 aa4.63□□□□□ -1.67
CD44-235ENST00000532339 MED16Q9Y2X0 877 aa4.63□□□□□ -1.67
CD44-235ENST00000532339 TMX2Q9Y320 296 aa4.63□□□□□ -1.67
CD44-235ENST00000532339 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.63□□□□□ -1.67
CD44-235ENST00000532339 MAST4O15021 2626 aa4.63□□□□□ -1.67
CD44-235ENST00000532339 GPR179Q6PRD1 2367 aa4.63□□□□□ -1.67
CD44-235ENST00000532339 COL15A1P39059 1388 aa4.63□□□□□ -1.67
CD44-235ENST00000532339 KIF24Q5T7B8 1368 aa4.63□□□□□ -1.67
CD44-235ENST00000532339 DCHS1Q96JQ0 3298 aa4.63□□□□□ -1.67
CD44-235ENST00000532339 SSC5DA1L4H1 1573 aa4.62□□□□□ -1.67
CD44-235ENST00000532339 A1L4Q6 167 aa4.62□□□□□ -1.67
CD44-235ENST00000532339 TISP43B9A030 160 aa4.62□□□□□ -1.67
CD44-235ENST00000532339 MYO1CO00159 1063 aa4.62□□□□□ -1.67
CD44-235ENST00000532339 MYO1FO00160 1098 aa4.62□□□□□ -1.67
CD44-235ENST00000532339 PPP6CO00743 305 aa4.62□□□□□ -1.67
CD44-235ENST00000532339 NPHP1O15259 732 aa4.62□□□□□ -1.67
CD44-235ENST00000532339 CYP2D6P10635 497 aa4.62□□□□□ -1.67
CD44-235ENST00000532339 XRCC6P12956 609 aaKnown RBP eCLIP4.62□□□□□ -1.67
CD44-235ENST00000532339 MPGP29372 298 aa4.62□□□□□ -1.67
CD44-235ENST00000532339 ALDH1B1P30837 517 aa4.62□□□□□ -1.67
CD44-235ENST00000532339 AMPHP49418 695 aa4.62□□□□□ -1.67
CD44-235ENST00000532339 PDE6CP51160 858 aa4.62□□□□□ -1.67
CD44-235ENST00000532339 EIF5P55010 431 aaKnown RBP4.62□□□□□ -1.67
CD44-235ENST00000532339 PRMT2P55345 433 aa4.62□□□□□ -1.67
CD44-235ENST00000532339 TPTEP56180 551 aa4.62□□□□□ -1.67
CD44-235ENST00000532339 WNT3P56703 355 aa4.62□□□□□ -1.67
CD44-235ENST00000532339 HOXA4Q00056 320 aaPredicted RBP4.62□□□□□ -1.67
CD44-235ENST00000532339 BIRC2Q13490 618 aa4.62□□□□□ -1.67
CD44-235ENST00000532339 TNIP1Q15025 636 aa4.62□□□□□ -1.67
CD44-235ENST00000532339 TBC1D25Q3MII6 688 aa4.62□□□□□ -1.67
CD44-235ENST00000532339 MORN5Q5VZ52 161 aa4.62□□□□□ -1.67
CD44-235ENST00000532339 NAPRTQ6XQN6 538 aa4.62□□□□□ -1.67
CD44-235ENST00000532339 CHST15Q7LFX5 561 aaPredicted RBP4.62□□□□□ -1.67
CD44-235ENST00000532339 YTHDF3Q7Z739 585 aaKnown RBP4.62□□□□□ -1.67
CD44-235ENST00000532339 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.62□□□□□ -1.67
CD44-235ENST00000532339 SLC15A3Q8IY34 581 aa4.62□□□□□ -1.67
CD44-235ENST00000532339 EXOC8Q8IYI6 725 aa4.62□□□□□ -1.67
CD44-235ENST00000532339 SAMD3Q8N6K7 520 aa4.62□□□□□ -1.67
CD44-235ENST00000532339 ZBTB34Q8NCN2 500 aa4.62□□□□□ -1.67
CD44-235ENST00000532339 PJA1Q8NG27 643 aa4.62□□□□□ -1.67
CD44-235ENST00000532339 RPL36ALQ969Q0 106 aaKnown RBP4.62□□□□□ -1.67
CD44-235ENST00000532339 ACO2Q99798 780 aaKnown RBP4.62□□□□□ -1.67
CD44-235ENST00000532339 VPS33BQ9H267 617 aa4.62□□□□□ -1.67
CD44-235ENST00000532339 TTYH1Q9H313 450 aaPredicted RBP4.62□□□□□ -1.67
CD44-235ENST00000532339 PIH1D1Q9NWS0 290 aaKnown RBP4.62□□□□□ -1.67
CD44-235ENST00000532339 CPA4Q9UI42 421 aa4.62□□□□□ -1.67
CD44-235ENST00000532339 FRMPD2Q68DX3 1309 aaPredicted RBP4.62□□□□□ -1.67
CD44-235ENST00000532339 TPRP12270 2363 aaKnown RBP4.62□□□□□ -1.67
CD44-235ENST00000532339 XIRP2A4UGR9 3374 aa4.61□□□□□ -1.67
CD44-235ENST00000532339 LOC102724159A0A0B4J2E5 919 aa4.61□□□□□ -1.67
CD44-235ENST00000532339 ERVV-2B6SEH9 535 aa4.61□□□□□ -1.67
CD44-235ENST00000532339 PRRT4C9JH25 899 aa4.61□□□□□ -1.67
CD44-235ENST00000532339 UBE2Q2LH0YL09 131 aa4.61□□□□□ -1.67
CD44-235ENST00000532339 APAF1O14727 1248 aa4.61□□□□□ -1.67
CD44-235ENST00000532339 PPIP5K2O43314 1243 aa4.61□□□□□ -1.67
CD44-235ENST00000532339 CTNND1O60716 968 aaKnown RBP4.61□□□□□ -1.67
CD44-235ENST00000532339 TJP3O95049 919 aa4.61□□□□□ -1.67
CD44-235ENST00000532339 SGPL1O95470 568 aa4.61□□□□□ -1.67
CD44-235ENST00000532339 TUBB4AP04350 444 aa4.61□□□□□ -1.67
CD44-235ENST00000532339 DLDP09622 509 aaKnown RBP4.61□□□□□ -1.67
CD44-235ENST00000532339 NHLRC4P0CG21 123 aaPredicted RBP4.61□□□□□ -1.67
CD44-235ENST00000532339 MYBP10242 640 aa4.61□□□□□ -1.67
CD44-235ENST00000532339 CCL5P13501 91 aa4.61□□□□□ -1.67
CD44-235ENST00000532339 PTGER1P34995 402 aa4.61□□□□□ -1.67
CD44-235ENST00000532339 UCP3P55916 312 aa4.61□□□□□ -1.67
CD44-235ENST00000532339 RAB1AP62820 205 aa4.61□□□□□ -1.67
CD44-235ENST00000532339 CYP4F2P78329 520 aa4.61□□□□□ -1.67
CD44-235ENST00000532339 FGL2Q14314 439 aa4.61□□□□□ -1.67
CD44-235ENST00000532339 PWP2Q15269 919 aaKnown RBP4.61□□□□□ -1.67
CD44-235ENST00000532339 TBC1D9BQ66K14 1250 aa4.61□□□□□ -1.67
CD44-235ENST00000532339 C11orf87Q6NUJ2 197 aa4.61□□□□□ -1.67
CD44-235ENST00000532339 MTHFD1LQ6UB35 978 aa4.61□□□□□ -1.67
CD44-235ENST00000532339 TRIM72Q6ZMU5 477 aa4.61□□□□□ -1.67
CD44-235ENST00000532339 MOB2Q70IA6 237 aa4.61□□□□□ -1.67
CD44-235ENST00000532339 OVCH2Q7RTZ1 564 aa4.61□□□□□ -1.67
CD44-235ENST00000532339 CELF5Q8N6W0 485 aaKnown RBP4.61□□□□□ -1.67
CD44-235ENST00000532339 PLBD2Q8NHP8 589 aa4.61□□□□□ -1.67
CD44-235ENST00000532339 MORC4Q8TE76 937 aa4.61□□□□□ -1.67
CD44-235ENST00000532339 XAGE5Q8WWM1 108 aa4.61□□□□□ -1.67
CD44-235ENST00000532339 R3HDM4Q96D70 268 aa4.61□□□□□ -1.67
CD44-235ENST00000532339 MRGPRX1Q96LB2 322 aa4.61□□□□□ -1.67
CD44-235ENST00000532339 MPHOSPH6Q99547 160 aaKnown RBP4.61□□□□□ -1.67
CD44-235ENST00000532339 BHMT2Q9H2M3 363 aa4.61□□□□□ -1.67
CD44-235ENST00000532339 BTBD3Q9Y2F9 522 aa4.61□□□□□ -1.67
CD44-235ENST00000532339 KAT6AQ92794 2004 aa4.61□□□□□ -1.67
CD44-235ENST00000532339 FLNBO75369 2602 aaKnown RBP4.6□□□□□ -1.67
CD44-235ENST00000532339 RGPD2P0DJD1 1756 aa4.6□□□□□ -1.67
CD44-235ENST00000532339 A0A088AWK7 358 aa4.6□□□□□ -1.67
CD44-235ENST00000532339 H3BML4 177 aa4.6□□□□□ -1.67
CD44-235ENST00000532339 TPP1O14773 563 aa4.6□□□□□ -1.67
CD44-235ENST00000532339 PHKG2P15735 406 aa4.6□□□□□ -1.67
CD44-235ENST00000532339 ITGB6P18564 788 aa4.6□□□□□ -1.67
CD44-235ENST00000532339 SLC11A2P49281 568 aa4.6□□□□□ -1.67
CD44-235ENST00000532339 GPSM2P81274 684 aa4.6□□□□□ -1.67
CD44-235ENST00000532339 MYO1EQ12965 1108 aa4.6□□□□□ -1.67
CD44-235ENST00000532339 MGAT5BQ3V5L5 792 aa4.6□□□□□ -1.67
CD44-235ENST00000532339 IL31Q6EBC2 164 aa4.6□□□□□ -1.67
CD44-235ENST00000532339 SLC18B1Q6NT16 456 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms