RNA–Protein interactions for RNA: ENST00000527158.2

SNRNP35-204, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 35, humanhuman

TSL 1 (best)

Gene SNRNP35, Length 2,161 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP35-204ENST00000527158 CXCR3P49682 368 aa16.77■□□□□ 0.27
SNRNP35-204ENST00000527158 IKBKEQ14164 716 aa16.77■□□□□ 0.27
SNRNP35-204ENST00000527158 SLC45A4Q5BKX6 768 aa16.77■□□□□ 0.27
SNRNP35-204ENST00000527158 UBAP2Q5T6F2 1119 aaKnown RBP16.77■□□□□ 0.27
SNRNP35-204ENST00000527158 C4orf22Q6V702 233 aa16.77■□□□□ 0.27
SNRNP35-204ENST00000527158 CCDC121Q6ZUS5 278 aa16.77■□□□□ 0.27
SNRNP35-204ENST00000527158 RFX8Q6ZV50 586 aa16.77■□□□□ 0.27
SNRNP35-204ENST00000527158 NAT8LQ8N9F0 302 aa16.77■□□□□ 0.27
SNRNP35-204ENST00000527158 RNF34Q969K3 372 aa16.77■□□□□ 0.27
SNRNP35-204ENST00000527158 C8orf48Q96LL4 319 aa16.77■□□□□ 0.27
SNRNP35-204ENST00000527158 TTC25Q96NG3 672 aa16.77■□□□□ 0.27
SNRNP35-204ENST00000527158 PPANQ9NQ55 473 aaKnown RBP16.77■□□□□ 0.27
SNRNP35-204ENST00000527158 CAPN7Q9Y6W3 813 aa16.77■□□□□ 0.27
SNRNP35-204ENST00000527158 RGS16O15492 202 aaPredicted RBP16.76■□□□□ 0.27
SNRNP35-204ENST00000527158 ARL4CP56559 192 aa16.76■□□□□ 0.27
SNRNP35-204ENST00000527158 MAGOHP61326 146 aaKnown RBP16.76■□□□□ 0.27
SNRNP35-204ENST00000527158 SLC10A2Q12908 348 aaPredicted RBP16.76■□□□□ 0.27
SNRNP35-204ENST00000527158 HIF1AQ16665 826 aa16.76■□□□□ 0.27
SNRNP35-204ENST00000527158 SWT1Q5T5J6 900 aaKnown RBP16.76■□□□□ 0.27
SNRNP35-204ENST00000527158 TAB3Q8N5C8 712 aaPredicted RBP16.76■□□□□ 0.27
SNRNP35-204ENST00000527158 CABS1Q96KC9 395 aa16.76■□□□□ 0.27
SNRNP35-204ENST00000527158 C9orf72Q96LT7 481 aa16.76■□□□□ 0.27
SNRNP35-204ENST00000527158 CCDC77Q9BR77 488 aa16.76■□□□□ 0.27
SNRNP35-204ENST00000527158 DTLQ9NZJ0 730 aa16.76■□□□□ 0.27
SNRNP35-204ENST00000527158 ATP11BQ9Y2G3 1177 aa16.76■□□□□ 0.27
SNRNP35-204ENST00000527158 SMIM23A6NLE4 172 aa16.75■□□□□ 0.27
SNRNP35-204ENST00000527158 HACD1B0YJ81 288 aa16.75■□□□□ 0.27
SNRNP35-204ENST00000527158 GOLGA8MH3BSY2 632 aa16.75■□□□□ 0.27
SNRNP35-204ENST00000527158 H7C4K7 107 aa16.75■□□□□ 0.27
SNRNP35-204ENST00000527158 MAGEA11P43364 429 aa16.75■□□□□ 0.27
SNRNP35-204ENST00000527158 ZNF135P52742 658 aaPredicted RBP16.75■□□□□ 0.27
SNRNP35-204ENST00000527158 SEC24CP53992 1094 aa16.75■□□□□ 0.27
SNRNP35-204ENST00000527158 ACTN3Q08043 901 aaPredicted RBP16.75■□□□□ 0.27
SNRNP35-204ENST00000527158 KCNT2Q6UVM3 1135 aa16.75■□□□□ 0.27
SNRNP35-204ENST00000527158 TAC4Q86UU9 113 aa16.75■□□□□ 0.27
SNRNP35-204ENST00000527158 NUP93Q8N1F7 819 aa16.75■□□□□ 0.27
SNRNP35-204ENST00000527158 DQX1Q8TE96 717 aaKnown RBP16.75■□□□□ 0.27
SNRNP35-204ENST00000527158 PGLYRP2Q96PD5 576 aa16.75■□□□□ 0.27
SNRNP35-204ENST00000527158 PHACTR1Q9C0D0 580 aa16.75■□□□□ 0.27
SNRNP35-204ENST00000527158 FBXO44Q9H4M3 255 aa16.75■□□□□ 0.27
SNRNP35-204ENST00000527158 TMEM39AQ9NV64 488 aa16.75■□□□□ 0.27
SNRNP35-204ENST00000527158 ETNK2Q9NVF9 386 aa16.75■□□□□ 0.27
SNRNP35-204ENST00000527158 XPO7Q9UIA9 1087 aaKnown RBP16.75■□□□□ 0.27
SNRNP35-204ENST00000527158 NT5C1B-RDH14C9J2C7 533 aa16.75■□□□□ 0.27
SNRNP35-204ENST00000527158 UPP2O95045 317 aa16.75■□□□□ 0.27
SNRNP35-204ENST00000527158 HCAR3P49019 387 aa16.75■□□□□ 0.27
SNRNP35-204ENST00000527158 ALDH7A1P49419 539 aaKnown RBP16.75■□□□□ 0.27
SNRNP35-204ENST00000527158 NRLP54845 237 aa16.75■□□□□ 0.27
SNRNP35-204ENST00000527158 ARPP19P56211 112 aa16.75■□□□□ 0.27
SNRNP35-204ENST00000527158 GKAP1Q5VSY0 366 aaPredicted RBP16.75■□□□□ 0.27
SNRNP35-204ENST00000527158 HEATR6Q6AI08 1181 aaKnown RBP16.75■□□□□ 0.27
SNRNP35-204ENST00000527158 CNKSR3Q6P9H4 555 aa16.75■□□□□ 0.27
SNRNP35-204ENST00000527158 PDZD4Q76G19 769 aaPredicted RBP16.75■□□□□ 0.27
SNRNP35-204ENST00000527158 CACNA2D3Q8IZS8 1091 aa16.75■□□□□ 0.27
SNRNP35-204ENST00000527158 TFB1MQ8WVM0 346 aaKnown RBP16.75■□□□□ 0.27
SNRNP35-204ENST00000527158 B3GALT6Q96L58 329 aa16.75■□□□□ 0.27
SNRNP35-204ENST00000527158 QKIQ96PU8 341 aaKnown RBP eCLIP16.75■□□□□ 0.27
SNRNP35-204ENST00000527158 FERMT1Q9BQL6 677 aa16.75■□□□□ 0.27
SNRNP35-204ENST00000527158 OXCT2Q9BYC2 517 aaPredicted RBP16.75■□□□□ 0.27
SNRNP35-204ENST00000527158 TKTL2Q9H0I9 626 aa16.75■□□□□ 0.27
SNRNP35-204ENST00000527158 HCSTQ9UBK5 93 aa16.75■□□□□ 0.27
SNRNP35-204ENST00000527158 TTC3P53804 2025 aa16.75■□□□□ 0.27
SNRNP35-204ENST00000527158 ALOX15BO15296 676 aa16.74■□□□□ 0.27
SNRNP35-204ENST00000527158 AGTP01019 485 aa16.74■□□□□ 0.27
SNRNP35-204ENST00000527158 CPB1P15086 417 aa16.74■□□□□ 0.27
SNRNP35-204ENST00000527158 TPI1P60174 286 aa16.74■□□□□ 0.27
SNRNP35-204ENST00000527158 SMARCB1Q12824 385 aa16.74■□□□□ 0.27
SNRNP35-204ENST00000527158 PDIA2Q13087 525 aaKnown RBP16.74■□□□□ 0.27
SNRNP35-204ENST00000527158 DPYSQ14117 519 aa16.74■□□□□ 0.27
SNRNP35-204ENST00000527158 DDR2Q16832 855 aa16.74■□□□□ 0.27
SNRNP35-204ENST00000527158 RNF187Q5TA31 235 aaPredicted RBP16.74■□□□□ 0.27
SNRNP35-204ENST00000527158 ANKRD22Q5VYY1 191 aa16.74■□□□□ 0.27
SNRNP35-204ENST00000527158 ANKS3Q6ZW76 656 aa16.74■□□□□ 0.27
SNRNP35-204ENST00000527158 ZBED8Q8IZ13 594 aa16.74■□□□□ 0.27
SNRNP35-204ENST00000527158 EPS8L3Q8TE67 593 aaKnown RBP16.74■□□□□ 0.27
SNRNP35-204ENST00000527158 ZNF333Q96JL9 665 aa16.74■□□□□ 0.27
SNRNP35-204ENST00000527158 TTPALQ9BTX7 342 aa16.74■□□□□ 0.27
SNRNP35-204ENST00000527158 KLC2Q9H0B6 622 aa16.74■□□□□ 0.27
SNRNP35-204ENST00000527158 LRRC4CQ9HCJ2 640 aa16.74■□□□□ 0.27
SNRNP35-204ENST00000527158 RAB6BQ9NRW1 208 aa16.74■□□□□ 0.27
SNRNP35-204ENST00000527158 TBX21Q9UL17 535 aa16.74■□□□□ 0.27
SNRNP35-204ENST00000527158 SCML2Q9UQR0 700 aa16.74■□□□□ 0.27
SNRNP35-204ENST00000527158 NLRC5Q86WI3 1866 aa16.74■□□□□ 0.27
SNRNP35-204ENST00000527158 CHADO15335 359 aa16.74■□□□□ 0.27
SNRNP35-204ENST00000527158 DGKIO75912 1065 aa16.74■□□□□ 0.27
SNRNP35-204ENST00000527158 HNRNPH1P31943 449 aaKnown RBP16.74■□□□□ 0.27
SNRNP35-204ENST00000527158 PBX3P40426 434 aa16.74■□□□□ 0.27
SNRNP35-204ENST00000527158 SLCO1A2P46721 670 aa16.74■□□□□ 0.27
SNRNP35-204ENST00000527158 GTF2A1P52655 376 aaPredicted RBP16.74■□□□□ 0.27
SNRNP35-204ENST00000527158 PPP1R21Q6ZMI0 780 aa16.74■□□□□ 0.27
SNRNP35-204ENST00000527158 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.74■□□□□ 0.27
SNRNP35-204ENST00000527158 MON1AQ86VX9 555 aa16.74■□□□□ 0.27
SNRNP35-204ENST00000527158 PDIK1LQ8N165 341 aa16.74■□□□□ 0.27
SNRNP35-204ENST00000527158 ARHGAP18Q8N392 663 aa16.74■□□□□ 0.27
SNRNP35-204ENST00000527158 ATAD1Q8NBU5 361 aa16.74■□□□□ 0.27
SNRNP35-204ENST00000527158 DIS3LQ8TF46 1054 aaKnown RBP16.74■□□□□ 0.27
SNRNP35-204ENST00000527158 OLFM3Q96PB7 478 aa16.74■□□□□ 0.27
SNRNP35-204ENST00000527158 EPAS1Q99814 870 aa16.74■□□□□ 0.27
SNRNP35-204ENST00000527158 ANLNQ9NQW6 1124 aa16.74■□□□□ 0.27
SNRNP35-204ENST00000527158 OR12D3Q9UGF7 316 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 81.8 ms