RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 TCRBV21S2A2A0A5A6 115 aa21.45■■□□□ 1.02
VPS28-206ENST00000526734 TYW5A2RUC4 315 aaKnown RBP21.45■■□□□ 1.02
VPS28-206ENST00000526734 ANTXRLA6NF34 631 aa21.45■■□□□ 1.02
VPS28-206ENST00000526734 ACSL4O60488 711 aa21.45■■□□□ 1.02
VPS28-206ENST00000526734 MTA1Q13330 715 aa21.45■■□□□ 1.02
VPS28-206ENST00000526734 CSRP2Q16527 193 aa21.45■■□□□ 1.02
VPS28-206ENST00000526734 SLC47A2Q86VL8 602 aa21.45■■□□□ 1.02
VPS28-206ENST00000526734 ZDHHC17Q8IUH5 632 aa21.45■■□□□ 1.02
VPS28-206ENST00000526734 TMEM35BQ8NCS4 154 aa21.45■■□□□ 1.02
VPS28-206ENST00000526734 PIWIL1Q96J94 861 aaKnown RBP21.45■■□□□ 1.02
VPS28-206ENST00000526734 STK33Q9BYT3 514 aa21.45■■□□□ 1.02
VPS28-206ENST00000526734 TPSD1Q9BZJ3 242 aa21.45■■□□□ 1.02
VPS28-206ENST00000526734 FANCLQ9NW38 375 aa21.45■■□□□ 1.02
VPS28-206ENST00000526734 NAALADL1Q9UQQ1 740 aa21.45■■□□□ 1.02
VPS28-206ENST00000526734 HSF2BPO75031 334 aa21.44■■□□□ 1.02
VPS28-206ENST00000526734 APOEP02649 317 aa21.44■■□□□ 1.02
VPS28-206ENST00000526734 TGM1P22735 817 aa21.44■■□□□ 1.02
VPS28-206ENST00000526734 HOXD9P28356 352 aaPredicted RBP21.44■■□□□ 1.02
VPS28-206ENST00000526734 ID4P47928 161 aa21.44■■□□□ 1.02
VPS28-206ENST00000526734 SPEM2Q0P670 501 aa21.44■■□□□ 1.02
VPS28-206ENST00000526734 RNF43Q68DV7 783 aa21.44■■□□□ 1.02
VPS28-206ENST00000526734 C11orf57Q6ZUT1 292 aaPredicted RBP21.44■■□□□ 1.02
VPS28-206ENST00000526734 TAC4Q86UU9 113 aa21.44■■□□□ 1.02
VPS28-206ENST00000526734 WDTC1Q8N5D0 677 aa21.44■■□□□ 1.02
VPS28-206ENST00000526734 C1orf131Q8NDD1 294 aaKnown RBP21.44■■□□□ 1.02
VPS28-206ENST00000526734 SLC39A13Q96H72 371 aa21.44■■□□□ 1.02
VPS28-206ENST00000526734 FCRL2Q96LA5 508 aaPredicted RBP21.44■■□□□ 1.02
VPS28-206ENST00000526734 CPXM1Q96SM3 734 aa21.44■■□□□ 1.02
VPS28-206ENST00000526734 NAT10Q9H0A0 1025 aaKnown RBP21.44■■□□□ 1.02
VPS28-206ENST00000526734 VPS16Q9H269 839 aa21.44■■□□□ 1.02
VPS28-206ENST00000526734 PDCL3Q9H2J4 239 aa21.44■■□□□ 1.02
VPS28-206ENST00000526734 SYNCQ9H7C4 482 aa21.44■■□□□ 1.02
VPS28-206ENST00000526734 SEMA4GQ9NTN9 838 aa21.44■■□□□ 1.02
VPS28-206ENST00000526734 TMEM51Q9NW97 253 aa21.44■■□□□ 1.02
VPS28-206ENST00000526734 HCN2Q9UL51 889 aa21.44■■□□□ 1.02
VPS28-206ENST00000526734 F8VZ95 297 aa21.43■■□□□ 1.02
VPS28-206ENST00000526734 LSM8O95777 96 aaKnown RBP21.43■■□□□ 1.02
VPS28-206ENST00000526734 SLC2A3P11169 496 aa21.43■■□□□ 1.02
VPS28-206ENST00000526734 CYP11B1P15538 503 aa21.43■■□□□ 1.02
VPS28-206ENST00000526734 GBP1P32455 592 aa21.43■■□□□ 1.02
VPS28-206ENST00000526734 CDH5P33151 784 aaPredicted RBP21.43■■□□□ 1.02
VPS28-206ENST00000526734 P2RY2P41231 377 aa21.43■■□□□ 1.02
VPS28-206ENST00000526734 STARD3Q14849 445 aa21.43■■□□□ 1.02
VPS28-206ENST00000526734 GEN1Q17RS7 908 aa21.43■■□□□ 1.02
VPS28-206ENST00000526734 PIK3R6Q5UE93 754 aa21.43■■□□□ 1.02
VPS28-206ENST00000526734 PASD1Q8IV76 773 aa21.43■■□□□ 1.02
VPS28-206ENST00000526734 DDX51Q8N8A6 666 aaKnown RBP eCLIP21.43■■□□□ 1.024e-6■□□□□ 11.3
VPS28-206ENST00000526734 HJURPQ8NCD3 748 aaPredicted RBP21.43■■□□□ 1.02
VPS28-206ENST00000526734 MSANTD4Q8NCY6 345 aa21.43■■□□□ 1.02
VPS28-206ENST00000526734 HMGB4Q8WW32 186 aa21.43■■□□□ 1.02
VPS28-206ENST00000526734 P2RY11Q96G91 374 aa21.43■■□□□ 1.02
VPS28-206ENST00000526734 SLC2A13Q96QE2 648 aa21.43■■□□□ 1.02
VPS28-206ENST00000526734 DUSP15Q9H1R2 295 aaPredicted RBP21.43■■□□□ 1.02
VPS28-206ENST00000526734 PARD6AQ9NPB6 346 aa21.43■■□□□ 1.02
VPS28-206ENST00000526734 ELOVL2Q9NXB9 296 aa21.43■■□□□ 1.02
VPS28-206ENST00000526734 THAP10Q9P2Z0 257 aaPredicted RBP21.43■■□□□ 1.02
VPS28-206ENST00000526734 LIMA1Q9UHB6 759 aaKnown RBP21.43■■□□□ 1.02
VPS28-206ENST00000526734 DMDP11532 3685 aa21.43■■□□□ 1.02
VPS28-206ENST00000526734 A0A1W2PQF6 199 aa21.42■■□□□ 1.02
VPS28-206ENST00000526734 TSPAN3O60637 253 aa21.42■■□□□ 1.02
VPS28-206ENST00000526734 TRUB2O95900 331 aaKnown RBP21.42■■□□□ 1.02
VPS28-206ENST00000526734 IGLV3-25P01717 112 aa21.42■■□□□ 1.02
VPS28-206ENST00000526734 SCNN1AP37088 669 aa21.42■■□□□ 1.02
VPS28-206ENST00000526734 CDK17Q00537 523 aa21.42■■□□□ 1.02
VPS28-206ENST00000526734 ENPP2Q13822 863 aa21.42■■□□□ 1.02
VPS28-206ENST00000526734 FAM133BQ5BKY9 247 aaKnown RBP21.42■■□□□ 1.02
VPS28-206ENST00000526734 SLC26A9Q7LBE3 791 aa21.42■■□□□ 1.02
VPS28-206ENST00000526734 ZNF677Q86XU0 584 aa21.42■■□□□ 1.02
VPS28-206ENST00000526734 PGBD3Q8N328 593 aa21.42■■□□□ 1.02
VPS28-206ENST00000526734 ZNF397Q8NF99 534 aaPredicted RBP21.42■■□□□ 1.02
VPS28-206ENST00000526734 GANQ9H2C0 597 aa21.42■■□□□ 1.02
VPS28-206ENST00000526734 ZDHHC4Q9NPG8 344 aa21.42■■□□□ 1.02
VPS28-206ENST00000526734 SLTMQ9NWH9 1034 aaKnown RBP eCLIP21.42■■□□□ 1.02
VPS28-206ENST00000526734 RRN3Q9NYV6 651 aa21.42■■□□□ 1.02
VPS28-206ENST00000526734 SLC12A6Q9UHW9 1150 aa21.42■■□□□ 1.02
VPS28-206ENST00000526734 ZNF217O75362 1048 aa21.41■■□□□ 1.02
VPS28-206ENST00000526734 PNMA6AP0CW24 399 aaPredicted RBP21.41■■□□□ 1.02
VPS28-206ENST00000526734 COPB1P53618 953 aaKnown RBP21.41■■□□□ 1.02
VPS28-206ENST00000526734 ARID5AQ03989 594 aa21.41■■□□□ 1.02
VPS28-206ENST00000526734 TYRO3Q06418 890 aa21.41■■□□□ 1.02
VPS28-206ENST00000526734 PUM1Q14671 1186 aaKnown RBP eCLIP21.41■■□□□ 1.02
VPS28-206ENST00000526734 SPDYCQ5MJ68 293 aa21.41■■□□□ 1.02
VPS28-206ENST00000526734 SYPL2Q5VXT5 272 aa21.41■■□□□ 1.02
VPS28-206ENST00000526734 PMS2CLQ68D20 193 aa21.41■■□□□ 1.02
VPS28-206ENST00000526734 OLFML1Q6UWY5 402 aa21.41■■□□□ 1.02
VPS28-206ENST00000526734 CCDC117Q8IWD4 279 aaPredicted RBP21.41■■□□□ 1.02
VPS28-206ENST00000526734 AHI1Q8N157 1196 aa21.41■■□□□ 1.02
VPS28-206ENST00000526734 BTN2A3PQ96KV6 586 aa21.41■■□□□ 1.02
VPS28-206ENST00000526734 ACOX2Q99424 681 aa21.41■■□□□ 1.02
VPS28-206ENST00000526734 STON1Q9Y6Q2 735 aa21.41■■□□□ 1.02
VPS28-206ENST00000526734 LRRC10BA6NIK2 292 aa21.4■■□□□ 1.02
VPS28-206ENST00000526734 LGALS16A8MUM7 142 aa21.4■■□□□ 1.02
VPS28-206ENST00000526734 DAB1O75553 588 aa21.4■■□□□ 1.02
VPS28-206ENST00000526734 GABRG2P18507 467 aa21.4■■□□□ 1.02
VPS28-206ENST00000526734 DPP6P42658 865 aa21.4■■□□□ 1.02
VPS28-206ENST00000526734 WASP42768 502 aa21.4■■□□□ 1.02
VPS28-206ENST00000526734 SLC6A3Q01959 620 aa21.4■■□□□ 1.02
VPS28-206ENST00000526734 PTPN20Q4JDL3 420 aa21.4■■□□□ 1.02
VPS28-206ENST00000526734 DCAF6Q58WW2 860 aa21.4■■□□□ 1.02
VPS28-206ENST00000526734 OR6B2Q6IFH4 312 aa21.4■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms