RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 TMEM245Q9H330 911 aa14.96□□□□□ -0.01
CPSF1-201ENST00000526271 MTG2Q9H4K7 406 aa14.96□□□□□ -0.01
CPSF1-201ENST00000526271 GAREM1Q9H706 876 aa14.96□□□□□ -0.01
CPSF1-201ENST00000526271 EXOC1Q9NV70 894 aa14.96□□□□□ -0.01
CPSF1-201ENST00000526271 MAPK8IP1Q9UQF2 711 aa14.96□□□□□ -0.01
CPSF1-201ENST00000526271 CFAP46Q8IYW2 2715 aa14.96□□□□□ -0.01
CPSF1-201ENST00000526271 KCNK3O14649 394 aa14.95□□□□□ -0.02
CPSF1-201ENST00000526271 MAPK13O15264 365 aa14.95□□□□□ -0.02
CPSF1-201ENST00000526271 BCAT2O15382 392 aaPredicted RBP14.95□□□□□ -0.02
CPSF1-201ENST00000526271 HSP90AA1P07900 732 aaKnown RBP14.95□□□□□ -0.02
CPSF1-201ENST00000526271 ZNF883P0CG24 379 aa14.95□□□□□ -0.02
CPSF1-201ENST00000526271 P4HA1P13674 534 aa14.95□□□□□ -0.02
CPSF1-201ENST00000526271 CSNK1EP49674 416 aaKnown RBP14.95□□□□□ -0.02
CPSF1-201ENST00000526271 CAMK2GQ13555 558 aaPredicted RBP14.95□□□□□ -0.02
CPSF1-201ENST00000526271 HNRNPDQ14103 355 aaKnown RBP14.95□□□□□ -0.02
CPSF1-201ENST00000526271 ACAP1Q15027 740 aa14.95□□□□□ -0.02
CPSF1-201ENST00000526271 TRIP4Q15650 581 aaPredicted RBP14.95□□□□□ -0.02
CPSF1-201ENST00000526271 KIF19Q2TAC6 998 aa14.95□□□□□ -0.02
CPSF1-201ENST00000526271 WDR45BQ5MNZ6 344 aa14.95□□□□□ -0.02
CPSF1-201ENST00000526271 ANKS1BQ7Z6G8 1248 aa14.95□□□□□ -0.02
CPSF1-201ENST00000526271 KIAA0907Q7Z7F0 614 aaPredicted RBP14.95□□□□□ -0.02
CPSF1-201ENST00000526271 ADIPOR2Q86V24 386 aa14.95□□□□□ -0.02
CPSF1-201ENST00000526271 FAM124AQ86V42 546 aa14.95□□□□□ -0.02
CPSF1-201ENST00000526271 SPRYD3Q8NCJ5 442 aa14.95□□□□□ -0.02
CPSF1-201ENST00000526271 CYB5D2Q8WUJ1 264 aa14.95□□□□□ -0.02
CPSF1-201ENST00000526271 MYEOVQ96EZ4 313 aa14.95□□□□□ -0.02
CPSF1-201ENST00000526271 SIPA1Q96FS4 1042 aa14.95□□□□□ -0.02
CPSF1-201ENST00000526271 EEF2KMTQ96G04 330 aa14.95□□□□□ -0.02
CPSF1-201ENST00000526271 MYO19Q96H55 970 aa14.95□□□□□ -0.02
CPSF1-201ENST00000526271 MIR1-1HGQ9H1L0 117 aa14.95□□□□□ -0.02
CPSF1-201ENST00000526271 MMRN2Q9H8L6 949 aa14.95□□□□□ -0.02
CPSF1-201ENST00000526271 TM7SF3Q9NS93 570 aa14.95□□□□□ -0.02
CPSF1-201ENST00000526271 SUSD2Q9UGT4 822 aa14.95□□□□□ -0.02
CPSF1-201ENST00000526271 RAXQ9Y2V3 346 aa14.95□□□□□ -0.02
CPSF1-201ENST00000526271 ZDHHC9Q9Y397 364 aa14.95□□□□□ -0.02
CPSF1-201ENST00000526271 KALRNO60229 2985 aa14.95□□□□□ -0.02
CPSF1-201ENST00000526271 PTPRQQ9UMZ3 2332 aa14.94□□□□□ -0.02
CPSF1-201ENST00000526271 SLC12A8A0AV02 714 aa14.94□□□□□ -0.02
CPSF1-201ENST00000526271 MEI4A8MW99 385 aa14.94□□□□□ -0.02
CPSF1-201ENST00000526271 PSEN1P49768 467 aa14.94□□□□□ -0.02
CPSF1-201ENST00000526271 SYCP2LQ5T4T6 812 aa14.94□□□□□ -0.02
CPSF1-201ENST00000526271 ARHGAP17Q68EM7 881 aa14.94□□□□□ -0.02
CPSF1-201ENST00000526271 PM20D1Q6GTS8 502 aa14.94□□□□□ -0.02
CPSF1-201ENST00000526271 TMPRSS7Q7RTY8 843 aa14.94□□□□□ -0.02
CPSF1-201ENST00000526271 PDZD3Q86UT5 571 aa14.94□□□□□ -0.02
CPSF1-201ENST00000526271 UBR7Q8N806 425 aa14.94□□□□□ -0.02
CPSF1-201ENST00000526271 LMLNQ96KR4 655 aa14.94□□□□□ -0.02
CPSF1-201ENST00000526271 ULBP1Q9BZM6 244 aa14.94□□□□□ -0.02
CPSF1-201ENST00000526271 ZDHHC5Q9C0B5 715 aa14.94□□□□□ -0.02
CPSF1-201ENST00000526271 CISHQ9NSE2 258 aa14.94□□□□□ -0.02
CPSF1-201ENST00000526271 FAM13BQ9NYF5 915 aa14.94□□□□□ -0.02
CPSF1-201ENST00000526271 MARCH2Q9P0N8 246 aa14.94□□□□□ -0.02
CPSF1-201ENST00000526271 KIAA1522Q9P206 1035 aaPredicted RBP14.94□□□□□ -0.02
CPSF1-201ENST00000526271 SNX11Q9Y5W9 270 aa14.94□□□□□ -0.02
CPSF1-201ENST00000526271 MYLKQ15746 1914 aa14.94□□□□□ -0.02
CPSF1-201ENST00000526271 FAM237AA0A1B0GTK4 181 aa14.93□□□□□ -0.02
CPSF1-201ENST00000526271 TSPAN3O60637 253 aa14.93□□□□□ -0.02
CPSF1-201ENST00000526271 RHOBTB3O94955 611 aa14.93□□□□□ -0.02
CPSF1-201ENST00000526271 RALAP11233 206 aa14.93□□□□□ -0.02
CPSF1-201ENST00000526271 GNSP15586 552 aa14.93□□□□□ -0.02
CPSF1-201ENST00000526271 NR2F2P24468 414 aa14.93□□□□□ -0.02
CPSF1-201ENST00000526271 YWHAGP61981 247 aaKnown RBP eCLIP14.93□□□□□ -0.02
CPSF1-201ENST00000526271 COG7P83436 770 aa14.93□□□□□ -0.02
CPSF1-201ENST00000526271 GOLGA8FQ08AF8 430 aa14.93□□□□□ -0.02
CPSF1-201ENST00000526271 GOLGA8DPQ0D2H9 430 aa14.93□□□□□ -0.02
CPSF1-201ENST00000526271 DPYDQ12882 1025 aa14.93□□□□□ -0.02
CPSF1-201ENST00000526271 STARD3Q14849 445 aa14.93□□□□□ -0.02
CPSF1-201ENST00000526271 ZSWIM1Q9BR11 485 aa14.93□□□□□ -0.02
CPSF1-201ENST00000526271 EBF2Q9HAK2 575 aa14.93□□□□□ -0.02
CPSF1-201ENST00000526271 SFMBT1Q9UHJ3 866 aa14.93□□□□□ -0.02
CPSF1-201ENST00000526271 STOML2Q9UJZ1 356 aa14.93□□□□□ -0.02
CPSF1-201ENST00000526271 ZBTB32Q9Y2Y4 487 aaPredicted RBP14.93□□□□□ -0.02
CPSF1-201ENST00000526271 FAM149AA5PLN7 773 aa14.92□□□□□ -0.02
CPSF1-201ENST00000526271 YJEFN3A6XGL0 299 aa14.92□□□□□ -0.02
CPSF1-201ENST00000526271 E7ENQ6 273 aa14.92□□□□□ -0.02
CPSF1-201ENST00000526271 MSI1O43347 362 aaKnown RBP14.92□□□□□ -0.02
CPSF1-201ENST00000526271 KIF20AO95235 890 aa14.92□□□□□ -0.02
CPSF1-201ENST00000526271 IGHV4-34P06331 123 aa14.92□□□□□ -0.02
CPSF1-201ENST00000526271 EPHX1P07099 455 aa14.92□□□□□ -0.02
CPSF1-201ENST00000526271 CHKAP35790 457 aa14.92□□□□□ -0.02
CPSF1-201ENST00000526271 MATKP42679 507 aa14.92□□□□□ -0.02
CPSF1-201ENST00000526271 TKTL1P51854 596 aa14.92□□□□□ -0.02
CPSF1-201ENST00000526271 ZNF132P52740 706 aa14.92□□□□□ -0.02
CPSF1-201ENST00000526271 RPS14P62263 151 aaKnown RBP14.92□□□□□ -0.02
CPSF1-201ENST00000526271 PDE4CQ08493 712 aa14.92□□□□□ -0.02
CPSF1-201ENST00000526271 EIF4HQ15056 248 aaKnown RBP14.92□□□□□ -0.02
CPSF1-201ENST00000526271 CBWD6Q4V339 395 aa14.92□□□□□ -0.02
CPSF1-201ENST00000526271 PKDCCQ504Y2 493 aa14.92□□□□□ -0.02
CPSF1-201ENST00000526271 CBWD3Q5JTY5 395 aa14.92□□□□□ -0.02
CPSF1-201ENST00000526271 CBWD5Q5RIA9 395 aa14.92□□□□□ -0.02
CPSF1-201ENST00000526271 FMNL3Q8IVF7 1028 aa14.92□□□□□ -0.02
CPSF1-201ENST00000526271 FAM186BQ8IYM0 893 aa14.92□□□□□ -0.02
CPSF1-201ENST00000526271 CEP57L1Q8IYX8 460 aa14.92□□□□□ -0.02
CPSF1-201ENST00000526271 DDX51Q8N8A6 666 aaKnown RBP eCLIP14.92□□□□□ -0.02
CPSF1-201ENST00000526271 OR2T3Q8NH03 318 aa14.92□□□□□ -0.02
CPSF1-201ENST00000526271 PRCCQ92733 491 aaPredicted RBP14.92□□□□□ -0.02
CPSF1-201ENST00000526271 HEXIM2Q96MH2 286 aaKnown RBP14.92□□□□□ -0.02
CPSF1-201ENST00000526271 IPO9Q96P70 1041 aaKnown RBP14.92□□□□□ -0.02
CPSF1-201ENST00000526271 NUP58Q9BVL2 599 aa14.92□□□□□ -0.02
CPSF1-201ENST00000526271 UBXN6Q9BZV1 441 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms