RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 ABLIM1O14639 778 aa10.46□□□□□ -0.73
MCF2-209ENST00000520602 XPO1O14980 1071 aaKnown RBP10.46□□□□□ -0.73
MCF2-209ENST00000520602 F2P00734 622 aa10.46□□□□□ -0.73
MCF2-209ENST00000520602 TAC1P20366 129 aa10.46□□□□□ -0.73
MCF2-209ENST00000520602 PCBP1Q15365 356 aaKnown RBP eCLIP10.46□□□□□ -0.73
MCF2-209ENST00000520602 C16orf46Q6P387 395 aa10.46□□□□□ -0.73
MCF2-209ENST00000520602 ZCCHC23Q6ZST2 131 aa10.46□□□□□ -0.73
MCF2-209ENST00000520602 RNF180Q86T96 592 aa10.46□□□□□ -0.73
MCF2-209ENST00000520602 TMEM40Q8WWA1 233 aa10.46□□□□□ -0.73
MCF2-209ENST00000520602 RXFP1Q9HBX9 757 aa10.46□□□□□ -0.73
MCF2-209ENST00000520602 OR12D3Q9UGF7 316 aa10.46□□□□□ -0.73
MCF2-209ENST00000520602 RABGEF1Q9UJ41 708 aa10.46□□□□□ -0.73
MCF2-209ENST00000520602 A0A0A0MRY4 1105 aa10.46□□□□□ -0.73
MCF2-209ENST00000520602 FGFR1P11362 822 aa10.46□□□□□ -0.73
MCF2-209ENST00000520602 ELNP15502 786 aa10.46□□□□□ -0.73
MCF2-209ENST00000520602 INCA1Q0VD86 236 aa10.46□□□□□ -0.73
MCF2-209ENST00000520602 MPP2Q14168 576 aa10.46□□□□□ -0.73
MCF2-209ENST00000520602 SLC25A52Q3SY17 297 aa10.46□□□□□ -0.73
MCF2-209ENST00000520602 TAF1BQ53T94 588 aaPredicted RBP10.46□□□□□ -0.73
MCF2-209ENST00000520602 OLFML1Q6UWY5 402 aa10.46□□□□□ -0.73
MCF2-209ENST00000520602 CTU1Q7Z7A3 348 aaKnown RBP10.46□□□□□ -0.73
MCF2-209ENST00000520602 TMEM110Q86TL2 294 aa10.46□□□□□ -0.73
MCF2-209ENST00000520602 LONP2Q86WA8 852 aa10.46□□□□□ -0.73
MCF2-209ENST00000520602 HIPK4Q8NE63 616 aa10.46□□□□□ -0.73
MCF2-209ENST00000520602 SPATA13Q96N96 652 aa10.46□□□□□ -0.73
MCF2-209ENST00000520602 SLC4A5Q9BY07 1137 aa10.46□□□□□ -0.73
MCF2-209ENST00000520602 ATXN3LQ9H3M9 355 aa10.46□□□□□ -0.73
MCF2-209ENST00000520602 IL1RAPL1Q9NZN1 696 aa10.46□□□□□ -0.73
MCF2-209ENST00000520602 SLC39A10Q9ULF5 831 aa10.46□□□□□ -0.73
MCF2-209ENST00000520602 GRID1Q9ULK0 1009 aa10.46□□□□□ -0.73
MCF2-209ENST00000520602 TRIM33Q9UPN9 1127 aa10.46□□□□□ -0.73
MCF2-209ENST00000520602 TM9SF1O15321 606 aa10.46□□□□□ -0.74
MCF2-209ENST00000520602 FAM189A1O60320 539 aa10.46□□□□□ -0.74
MCF2-209ENST00000520602 KPNA6O60684 536 aa10.46□□□□□ -0.74
MCF2-209ENST00000520602 ERVK-10P10266 1014 aa10.46□□□□□ -0.74
MCF2-209ENST00000520602 MYL2P10916 166 aa10.46□□□□□ -0.74
MCF2-209ENST00000520602 NQO1P15559 274 aaKnown RBP10.46□□□□□ -0.74
MCF2-209ENST00000520602 WDR4P57081 412 aaKnown RBP10.46□□□□□ -0.74
MCF2-209ENST00000520602 YWHAHQ04917 246 aaPredicted RBP10.46□□□□□ -0.74
MCF2-209ENST00000520602 MUM1Q2TAK8 710 aa10.46□□□□□ -0.74
MCF2-209ENST00000520602 C4orf50Q6ZRC1 276 aa10.46□□□□□ -0.74
MCF2-209ENST00000520602 FAM35AQ86V20 835 aa10.46□□□□□ -0.74
MCF2-209ENST00000520602 FUKQ8N0W3 1084 aa10.46□□□□□ -0.74
MCF2-209ENST00000520602 ARFGAP1Q8N6T3 406 aa10.46□□□□□ -0.74
MCF2-209ENST00000520602 NAT8LQ8N9F0 302 aa10.46□□□□□ -0.74
MCF2-209ENST00000520602 OR52K1Q8NGK4 314 aa10.46□□□□□ -0.74
MCF2-209ENST00000520602 TEKT4Q8WW24 435 aa10.46□□□□□ -0.74
MCF2-209ENST00000520602 EXT2Q93063 718 aa10.46□□□□□ -0.74
MCF2-209ENST00000520602 P2RY11Q96G91 374 aa10.46□□□□□ -0.74
MCF2-209ENST00000520602 MS4A4AQ96JQ5 239 aa10.46□□□□□ -0.74
MCF2-209ENST00000520602 PPP1R12CQ9BZL4 782 aa10.46□□□□□ -0.74
MCF2-209ENST00000520602 SP110Q9HB58 689 aa10.46□□□□□ -0.74
MCF2-209ENST00000520602 CPSF2Q9P2I0 782 aaKnown RBP10.46□□□□□ -0.74
MCF2-209ENST00000520602 SPTLC1O15269 473 aa10.45□□□□□ -0.74
MCF2-209ENST00000520602 OPHN1O60890 802 aa10.45□□□□□ -0.74
MCF2-209ENST00000520602 CBX6O95503 412 aa10.45□□□□□ -0.74
MCF2-209ENST00000520602 FOXN2P32314 431 aa10.45□□□□□ -0.74
MCF2-209ENST00000520602 ETFBP38117 255 aa10.45□□□□□ -0.74
MCF2-209ENST00000520602 RPL10AP62906 217 aaKnown RBP10.45□□□□□ -0.74
MCF2-209ENST00000520602 ASPHQ12797 758 aa10.45□□□□□ -0.74
MCF2-209ENST00000520602 USP10Q14694 798 aaKnown RBP10.45□□□□□ -0.74
MCF2-209ENST00000520602 SDHAF4Q5VUM1 108 aa10.45□□□□□ -0.74
MCF2-209ENST00000520602 SYPL2Q5VXT5 272 aa10.45□□□□□ -0.74
MCF2-209ENST00000520602 APOPT1Q96IL0 206 aa10.45□□□□□ -0.74
MCF2-209ENST00000520602 ZNF317Q96PQ6 595 aaPredicted RBP10.45□□□□□ -0.74
MCF2-209ENST00000520602 PHIPQ8WWQ0 1821 aa10.45□□□□□ -0.74
MCF2-209ENST00000520602 MFSD11O43934 449 aa10.45□□□□□ -0.74
MCF2-209ENST00000520602 CYP3A5P20815 502 aa10.45□□□□□ -0.74
MCF2-209ENST00000520602 GRIA1P42261 906 aa10.45□□□□□ -0.74
MCF2-209ENST00000520602 HSP90AA5PQ58FG0 334 aa10.45□□□□□ -0.74
MCF2-209ENST00000520602 TOP6BLQ8N6T0 577 aa10.45□□□□□ -0.74
MCF2-209ENST00000520602 MYLPFQ96A32 169 aa10.45□□□□□ -0.74
MCF2-209ENST00000520602 FAXDC2Q96IV6 333 aa10.45□□□□□ -0.74
MCF2-209ENST00000520602 TRIM56Q9BRZ2 755 aaKnown RBP10.45□□□□□ -0.74
MCF2-209ENST00000520602 MYLK2Q9H1R3 596 aa10.45□□□□□ -0.74
MCF2-209ENST00000520602 NOD2Q9HC29 1040 aa10.45□□□□□ -0.74
MCF2-209ENST00000520602 LGALS13Q9UHV8 139 aa10.45□□□□□ -0.74
MCF2-209ENST00000520602 GGA2Q9UJY4 613 aa10.45□□□□□ -0.74
MCF2-209ENST00000520602 PADI3Q9ULW8 664 aa10.45□□□□□ -0.74
MCF2-209ENST00000520602 GREB1LQ9C091 1923 aaPredicted RBP10.45□□□□□ -0.74
MCF2-209ENST00000520602 EIF4E1BA6NMX2 242 aaKnown RBP10.45□□□□□ -0.74
MCF2-209ENST00000520602 METTL18O95568 372 aa10.45□□□□□ -0.74
MCF2-209ENST00000520602 SPRP35270 261 aaPredicted RBP10.45□□□□□ -0.74
MCF2-209ENST00000520602 GPX6P59796 221 aa10.45□□□□□ -0.74
MCF2-209ENST00000520602 KCNJ2P63252 427 aa10.45□□□□□ -0.74
MCF2-209ENST00000520602 SOX4Q06945 474 aaPredicted RBP10.45□□□□□ -0.74
MCF2-209ENST00000520602 PDK4Q16654 411 aa10.45□□□□□ -0.74
MCF2-209ENST00000520602 PPP1R15BQ5SWA1 713 aa10.45□□□□□ -0.74
MCF2-209ENST00000520602 MARCH8Q5T0T0 291 aa10.45□□□□□ -0.74
MCF2-209ENST00000520602 TFAP2DQ7Z6R9 452 aa10.45□□□□□ -0.74
MCF2-209ENST00000520602 STRA8Q7Z7C7 330 aa10.45□□□□□ -0.74
MCF2-209ENST00000520602 PCED1BQ96HM7 432 aa10.45□□□□□ -0.74
MCF2-209ENST00000520602 NUDCD1Q96RS6 583 aa10.45□□□□□ -0.74
MCF2-209ENST00000520602 PTPN18Q99952 460 aa10.45□□□□□ -0.74
MCF2-209ENST00000520602 TUBB6Q9BUF5 446 aa10.45□□□□□ -0.74
MCF2-209ENST00000520602 RHOBTB2Q9BYZ6 727 aa10.45□□□□□ -0.74
MCF2-209ENST00000520602 SHCBP1LQ9BZQ2 653 aa10.45□□□□□ -0.74
MCF2-209ENST00000520602 UNKQ9C0B0 810 aaKnown RBP10.45□□□□□ -0.74
MCF2-209ENST00000520602 WWP1Q9H0M0 922 aa10.45□□□□□ -0.74
MCF2-209ENST00000520602 ADAMTS10Q9H324 1103 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms