RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 RCAN1P53805 252 aa8.22□□□□□ -1.09
LSM1-202ENST00000520286 DCAF7P61962 342 aa8.22□□□□□ -1.09
LSM1-202ENST00000520286 DEUP1Q05D60 604 aa8.22□□□□□ -1.09
LSM1-202ENST00000520286 KRT32Q14532 448 aa8.22□□□□□ -1.09
LSM1-202ENST00000520286 BAK1Q16611 211 aa8.22□□□□□ -1.09
LSM1-202ENST00000520286 CYP1B1Q16678 543 aa8.22□□□□□ -1.09
LSM1-202ENST00000520286 SLC45A4Q5BKX6 768 aa8.22□□□□□ -1.09
LSM1-202ENST00000520286 CBWD5Q5RIA9 395 aa8.22□□□□□ -1.09
LSM1-202ENST00000520286 LCNL1Q6ZST4 164 aa8.22□□□□□ -1.09
LSM1-202ENST00000520286 CCDC89Q8N998 374 aa8.22□□□□□ -1.09
LSM1-202ENST00000520286 NGDNQ8NEJ9 315 aaKnown RBP8.22□□□□□ -1.09
LSM1-202ENST00000520286 HERC2P3Q9BVR0 1158 aa8.22□□□□□ -1.09
LSM1-202ENST00000520286 KLC2Q9H0B6 622 aa8.22□□□□□ -1.09
LSM1-202ENST00000520286 SAP30LQ9HAJ7 183 aa8.22□□□□□ -1.09
LSM1-202ENST00000520286 KLC4Q9NSK0 619 aa8.22□□□□□ -1.09
LSM1-202ENST00000520286 PARPBPQ9NWS1 579 aa8.22□□□□□ -1.09
LSM1-202ENST00000520286 EHD3Q9NZN3 535 aa8.22□□□□□ -1.09
LSM1-202ENST00000520286 ORC3Q9UBD5 711 aaPredicted RBP8.22□□□□□ -1.09
LSM1-202ENST00000520286 NRBP1Q9UHY1 535 aa8.22□□□□□ -1.09
LSM1-202ENST00000520286 CCNL1Q9UK58 526 aaPredicted RBP8.22□□□□□ -1.09
LSM1-202ENST00000520286 RABGAP1Q9Y3P9 1069 aa8.22□□□□□ -1.09
LSM1-202ENST00000520286 PEX12O00623 359 aa8.21□□□□□ -1.1
LSM1-202ENST00000520286 ANP32CO43423 234 aa8.21□□□□□ -1.1
LSM1-202ENST00000520286 NXPH3O95157 252 aa8.21□□□□□ -1.1
LSM1-202ENST00000520286 CHN1P15882 459 aa8.21□□□□□ -1.1
LSM1-202ENST00000520286 ABCD3P28288 659 aa8.21□□□□□ -1.1
LSM1-202ENST00000520286 IGHMBP2P38935 993 aaKnown RBP8.21□□□□□ -1.1
LSM1-202ENST00000520286 PDE1AP54750 535 aa8.21□□□□□ -1.1
LSM1-202ENST00000520286 TPTEP56180 551 aa8.21□□□□□ -1.1
LSM1-202ENST00000520286 DNASE1L3Q13609 305 aa8.21□□□□□ -1.1
LSM1-202ENST00000520286 TSTQ16762 297 aaKnown RBP8.21□□□□□ -1.1
LSM1-202ENST00000520286 FAM187BQ17R55 369 aa8.21□□□□□ -1.1
LSM1-202ENST00000520286 LIPMQ5VYY2 423 aa8.21□□□□□ -1.1
LSM1-202ENST00000520286 ITPRIPL1Q6GPH6 555 aa8.21□□□□□ -1.1
LSM1-202ENST00000520286 ACSM6Q6P461 480 aa8.21□□□□□ -1.1
LSM1-202ENST00000520286 NEK10Q6ZWH5 1172 aa8.21□□□□□ -1.1
LSM1-202ENST00000520286 TBC1D22AQ8WUA7 517 aa8.21□□□□□ -1.1
LSM1-202ENST00000520286 SLC25A43Q8WUT9 341 aaPredicted RBP8.21□□□□□ -1.1
LSM1-202ENST00000520286 PRR11Q96HE9 360 aaPredicted RBP8.21□□□□□ -1.1
LSM1-202ENST00000520286 LOXL4Q96JB6 756 aa8.21□□□□□ -1.1
LSM1-202ENST00000520286 ARHGAP39Q9C0H5 1083 aa8.21□□□□□ -1.1
LSM1-202ENST00000520286 CEP72Q9P209 647 aa8.21□□□□□ -1.1
LSM1-202ENST00000520286 TESQ9UGI8 421 aaKnown RBP8.21□□□□□ -1.1
LSM1-202ENST00000520286 GABRQQ9UN88 632 aa8.21□□□□□ -1.1
LSM1-202ENST00000520286 RPS6KL1Q9Y6S9 549 aa8.21□□□□□ -1.1
LSM1-202ENST00000520286 NUP160Q12769 1436 aa8.2□□□□□ -1.1
LSM1-202ENST00000520286 ANKRD18BA2A2Z9 1011 aa8.2□□□□□ -1.1
LSM1-202ENST00000520286 VWC2LB2RUY7 222 aa8.2□□□□□ -1.1
LSM1-202ENST00000520286 AP4M1O00189 453 aa8.2□□□□□ -1.1
LSM1-202ENST00000520286 CES2O00748 559 aa8.2□□□□□ -1.1
LSM1-202ENST00000520286 SPTLC2O15270 562 aa8.2□□□□□ -1.1
LSM1-202ENST00000520286 YY2O15391 372 aa8.2□□□□□ -1.1
LSM1-202ENST00000520286 LPXNO60711 386 aa8.2□□□□□ -1.1
LSM1-202ENST00000520286 CHRM2P08172 466 aa8.2□□□□□ -1.1
LSM1-202ENST00000520286 CYP3A4P08684 503 aa8.2□□□□□ -1.1
LSM1-202ENST00000520286 PNPLA4P41247 253 aa8.2□□□□□ -1.1
LSM1-202ENST00000520286 PCP4P48539 62 aa8.2□□□□□ -1.1
LSM1-202ENST00000520286 SLC25A3Q00325 362 aa8.2□□□□□ -1.1
LSM1-202ENST00000520286 E2F1Q01094 437 aa8.2□□□□□ -1.1
LSM1-202ENST00000520286 PRKG2Q13237 762 aa8.2□□□□□ -1.1
LSM1-202ENST00000520286 TOMM20Q15388 145 aa8.2□□□□□ -1.1
LSM1-202ENST00000520286 TIGD2Q4W5G0 525 aa8.2□□□□□ -1.1
LSM1-202ENST00000520286 NAA35Q5VZE5 725 aa8.2□□□□□ -1.1
LSM1-202ENST00000520286 HAUS3Q68CZ6 603 aa8.2□□□□□ -1.1
LSM1-202ENST00000520286 PTCHD4Q6ZW05 846 aa8.2□□□□□ -1.1
LSM1-202ENST00000520286 CHD1LQ86WJ1 897 aa8.2□□□□□ -1.1
LSM1-202ENST00000520286 ARMC8Q8IUR7 673 aa8.2□□□□□ -1.1
LSM1-202ENST00000520286 SIRT6Q8N6T7 355 aa8.2□□□□□ -1.1
LSM1-202ENST00000520286 ARRDC3Q96B67 414 aa8.2□□□□□ -1.1
LSM1-202ENST00000520286 PPP1R10Q96QC0 940 aaKnown RBP8.2□□□□□ -1.1
LSM1-202ENST00000520286 MGAT4CQ9UBM8 478 aa8.2□□□□□ -1.1
LSM1-202ENST00000520286 CNPY2Q9Y2B0 182 aa8.2□□□□□ -1.1
LSM1-202ENST00000520286 GDAQ9Y2T3 454 aa8.2□□□□□ -1.1
LSM1-202ENST00000520286 A6NCN8 305 aa8.19□□□□□ -1.1
LSM1-202ENST00000520286 TIMM44O43615 452 aa8.19□□□□□ -1.1
LSM1-202ENST00000520286 TMPRSS11DO60235 418 aa8.19□□□□□ -1.1
LSM1-202ENST00000520286 USO1O60763 962 aaKnown RBP8.19□□□□□ -1.1
LSM1-202ENST00000520286 ITGAMP11215 1152 aa8.19□□□□□ -1.1
LSM1-202ENST00000520286 ACP5P13686 325 aa8.19□□□□□ -1.1
LSM1-202ENST00000520286 CCT4P50991 539 aaKnown RBP8.19□□□□□ -1.1
LSM1-202ENST00000520286 TAS2R50P59544 299 aa8.19□□□□□ -1.1
LSM1-202ENST00000520286 RPP30P78346 268 aaKnown RBP8.19□□□□□ -1.1
LSM1-202ENST00000520286 TLE3Q04726 772 aa8.19□□□□□ -1.1
LSM1-202ENST00000520286 R3HCC1LQ7Z5L2 792 aaKnown RBP8.19□□□□□ -1.1
LSM1-202ENST00000520286 C1orf210Q8IVY1 113 aa8.19□□□□□ -1.1
LSM1-202ENST00000520286 GALNT4Q8N4A0 578 aa8.19□□□□□ -1.1
LSM1-202ENST00000520286 PNPLA1Q8N8W4 532 aa8.19□□□□□ -1.1
LSM1-202ENST00000520286 ANKRD52Q8NB46 1076 aa8.19□□□□□ -1.1
LSM1-202ENST00000520286 IL17DQ8TAD2 202 aa8.19□□□□□ -1.1
LSM1-202ENST00000520286 ADAMTS18Q8TE60 1221 aa8.19□□□□□ -1.1
LSM1-202ENST00000520286 TRMT61AQ96FX7 289 aaKnown RBP8.19□□□□□ -1.1
LSM1-202ENST00000520286 FBXL20Q96IG2 436 aa8.19□□□□□ -1.1
LSM1-202ENST00000520286 APOPT1Q96IL0 206 aa8.19□□□□□ -1.1
LSM1-202ENST00000520286 PRDM13Q9H4Q3 707 aa8.19□□□□□ -1.1
LSM1-202ENST00000520286 ZNF703Q9H7S9 590 aaPredicted RBP8.19□□□□□ -1.1
LSM1-202ENST00000520286 KCTD5Q9NXV2 234 aa8.19□□□□□ -1.1
LSM1-202ENST00000520286 CNOT7Q9UIV1 285 aaKnown RBP8.19□□□□□ -1.1
LSM1-202ENST00000520286 SLC45A1Q9Y2W3 748 aa8.19□□□□□ -1.1
LSM1-202ENST00000520286 PRDM2Q13029 1718 aa8.19□□□□□ -1.1
LSM1-202ENST00000520286 CEP170Q5SW79 1584 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms