RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 ABCB4P21439 1286 aa14.82□□□□□ -0.04
NUP54-216ENST00000514901 CD72P21854 359 aa14.82□□□□□ -0.04
NUP54-216ENST00000514901 TARSP26639 723 aaKnown RBP14.82□□□□□ -0.04
NUP54-216ENST00000514901 AVPR2P30518 371 aa14.82□□□□□ -0.04
NUP54-216ENST00000514901 SDC4P31431 198 aa14.82□□□□□ -0.04
NUP54-216ENST00000514901 FLT3P36888 993 aa14.82□□□□□ -0.04
NUP54-216ENST00000514901 EIF4A3P38919 411 aaKnown RBP14.82□□□□□ -0.04
NUP54-216ENST00000514901 SULT1E1P49888 294 aa14.82□□□□□ -0.04
NUP54-216ENST00000514901 GALK1P51570 392 aa14.82□□□□□ -0.04
NUP54-216ENST00000514901 NME3Q13232 169 aa14.82□□□□□ -0.04
NUP54-216ENST00000514901 PON2Q15165 354 aa14.82□□□□□ -0.04
NUP54-216ENST00000514901 MPPE1Q53F39 396 aa14.82□□□□□ -0.04
NUP54-216ENST00000514901 ZC3H12AQ5D1E8 599 aaKnown RBP14.82□□□□□ -0.04
NUP54-216ENST00000514901 TMEM196Q5HYL7 178 aa14.82□□□□□ -0.04
NUP54-216ENST00000514901 BRMS1LQ5PSV4 323 aa14.82□□□□□ -0.04
NUP54-216ENST00000514901 ACBD5Q5T8D3 534 aaPredicted RBP14.82□□□□□ -0.04
NUP54-216ENST00000514901 DCUN1D2Q6PH85 259 aa14.82□□□□□ -0.04
NUP54-216ENST00000514901 TXNDC11Q6PKC3 985 aa14.82□□□□□ -0.04
NUP54-216ENST00000514901 TPGS1Q6ZTW0 290 aa14.82□□□□□ -0.04
NUP54-216ENST00000514901 NUDT18Q6ZVK8 323 aa14.82□□□□□ -0.04
NUP54-216ENST00000514901 ZNF687Q8N1G0 1237 aa14.82□□□□□ -0.04
NUP54-216ENST00000514901 SYNPOQ8N3V7 929 aa14.82□□□□□ -0.04
NUP54-216ENST00000514901 RXFP2Q8WXD0 754 aa14.82□□□□□ -0.04
NUP54-216ENST00000514901 CLDN23Q96B33 292 aa14.82□□□□□ -0.04
NUP54-216ENST00000514901 BBS2Q9BXC9 721 aa14.82□□□□□ -0.04
NUP54-216ENST00000514901 FOXQ1Q9C009 403 aa14.82□□□□□ -0.04
NUP54-216ENST00000514901 DEF6Q9H4E7 631 aa14.82□□□□□ -0.04
NUP54-216ENST00000514901 WDCPQ9H6R7 721 aa14.82□□□□□ -0.04
NUP54-216ENST00000514901 NDRG2Q9UN36 371 aaKnown RBP14.82□□□□□ -0.04
NUP54-216ENST00000514901 COL4A2P08572 1712 aa14.82□□□□□ -0.04
NUP54-216ENST00000514901 TCRBV5S1A1TA0A578 114 aa14.81□□□□□ -0.04
NUP54-216ENST00000514901 ENDOD1O94919 500 aa14.81□□□□□ -0.04
NUP54-216ENST00000514901 PENKP01210 267 aaPredicted RBP14.81□□□□□ -0.04
NUP54-216ENST00000514901 TYRP14679 529 aa14.81□□□□□ -0.04
NUP54-216ENST00000514901 RRM1P23921 792 aa14.81□□□□□ -0.04
NUP54-216ENST00000514901 CDC25BP30305 580 aa14.81□□□□□ -0.04
NUP54-216ENST00000514901 RFC1P35251 1148 aaPredicted RBP14.81□□□□□ -0.04
NUP54-216ENST00000514901 OPRD1P41143 372 aa14.81□□□□□ -0.04
NUP54-216ENST00000514901 PTPN9P43378 593 aa14.81□□□□□ -0.04
NUP54-216ENST00000514901 RPS9P46781 194 aaKnown RBP14.81□□□□□ -0.04
NUP54-216ENST00000514901 CXCR3P49682 368 aa14.81□□□□□ -0.04
NUP54-216ENST00000514901 PITX1P78337 314 aaPredicted RBP14.81□□□□□ -0.04
NUP54-216ENST00000514901 DEUP1Q05D60 604 aa14.81□□□□□ -0.04
NUP54-216ENST00000514901 SLC18A3Q16572 532 aa14.81□□□□□ -0.04
NUP54-216ENST00000514901 GAB4Q2WGN9 574 aa14.81□□□□□ -0.04
NUP54-216ENST00000514901 FBXO43Q4G163 708 aa14.81□□□□□ -0.04
NUP54-216ENST00000514901 MPP7Q5T2T1 576 aa14.81□□□□□ -0.04
NUP54-216ENST00000514901 PLEKHA7Q6IQ23 1121 aa14.81□□□□□ -0.04
NUP54-216ENST00000514901 ALKBH5Q6P6C2 394 aaKnown RBP14.81□□□□□ -0.04
NUP54-216ENST00000514901 STRADAQ7RTN6 431 aa14.81□□□□□ -0.04
NUP54-216ENST00000514901 PHLDB2Q86SQ0 1253 aa14.81□□□□□ -0.04
NUP54-216ENST00000514901 CCDC105Q8IYK2 499 aa14.81□□□□□ -0.04
NUP54-216ENST00000514901 CHFRQ96EP1 664 aa14.81□□□□□ -0.04
NUP54-216ENST00000514901 TMA16Q96EY4 203 aaKnown RBP14.81□□□□□ -0.04
NUP54-216ENST00000514901 CCDC42Q96M95 316 aa14.81□□□□□ -0.04
NUP54-216ENST00000514901 PNKPQ96T60 521 aa14.81□□□□□ -0.04
NUP54-216ENST00000514901 TBCBQ99426 244 aa14.81□□□□□ -0.04
NUP54-216ENST00000514901 IER2Q9BTL4 223 aa14.81□□□□□ -0.04
NUP54-216ENST00000514901 LMAN1LQ9HAT1 526 aa14.81□□□□□ -0.04
NUP54-216ENST00000514901 MRPL47Q9HD33 250 aaKnown RBP14.81□□□□□ -0.04
NUP54-216ENST00000514901 DEC1Q9P2X7 70 aa14.81□□□□□ -0.04
NUP54-216ENST00000514901 MTF2Q9Y483 593 aaPredicted RBP14.81□□□□□ -0.04
NUP54-216ENST00000514901 SCINQ9Y6U3 715 aa14.81□□□□□ -0.04
NUP54-216ENST00000514901 SYNJ2BP-COX16A0A087WUM0 186 aa14.8□□□□□ -0.04
NUP54-216ENST00000514901 A0A087X0T9 212 aa14.8□□□□□ -0.04
NUP54-216ENST00000514901 A0A0A0MRY4 1105 aa14.8□□□□□ -0.04
NUP54-216ENST00000514901 NEDD8-MDP1E9PL57 170 aa14.8□□□□□ -0.04
NUP54-216ENST00000514901 GFRA2O00451 464 aa14.8□□□□□ -0.04
NUP54-216ENST00000514901 AKR1B10O60218 316 aa14.8□□□□□ -0.04
NUP54-216ENST00000514901 CACNG3O60359 315 aa14.8□□□□□ -0.04
NUP54-216ENST00000514901 ADCY5O95622 1261 aa14.8□□□□□ -0.04
NUP54-216ENST00000514901 FAM228BP0C875 321 aa14.8□□□□□ -0.04
NUP54-216ENST00000514901 CHRNB1P11230 501 aa14.8□□□□□ -0.04
NUP54-216ENST00000514901 GPD1P21695 349 aa14.8□□□□□ -0.04
NUP54-216ENST00000514901 RDXP35241 583 aaKnown RBP14.8□□□□□ -0.04
NUP54-216ENST00000514901 ZNF143P52747 638 aaPredicted RBP14.8□□□□□ -0.04
NUP54-216ENST00000514901 MAMLD1Q13495 774 aa14.8□□□□□ -0.04
NUP54-216ENST00000514901 ASTE1Q2TB18 679 aaPredicted RBP14.8□□□□□ -0.04
NUP54-216ENST00000514901 CCDC14Q49A88 953 aa14.8□□□□□ -0.04
NUP54-216ENST00000514901 PPP1R15BQ5SWA1 713 aa14.8□□□□□ -0.04
NUP54-216ENST00000514901 CCDC122Q5T0U0 273 aa14.8□□□□□ -0.04
NUP54-216ENST00000514901 BNIPLQ7Z465 357 aa14.8□□□□□ -0.04
NUP54-216ENST00000514901 ETFBKMTQ8IXQ9 262 aa14.8□□□□□ -0.04
NUP54-216ENST00000514901 EMC1Q8N766 993 aa14.8□□□□□ -0.04
NUP54-216ENST00000514901 ZNF557Q8N988 423 aaPredicted RBP14.8□□□□□ -0.04
NUP54-216ENST00000514901 TC2NQ8N9U0 490 aa14.8□□□□□ -0.04
NUP54-216ENST00000514901 JOSD2Q8TAC2 188 aa14.8□□□□□ -0.04
NUP54-216ENST00000514901 DDI1Q8WTU0 396 aa14.8□□□□□ -0.04
NUP54-216ENST00000514901 CENPIQ92674 756 aaPredicted RBP14.8□□□□□ -0.04
NUP54-216ENST00000514901 ZNF653Q96CK0 615 aa14.8□□□□□ -0.04
NUP54-216ENST00000514901 CFAP57Q96MR6 1250 aa14.8□□□□□ -0.04
NUP54-216ENST00000514901 SLC2A11Q9BYW1 496 aa14.8□□□□□ -0.04
NUP54-216ENST00000514901 NHEJ1Q9H9Q4 299 aaPredicted RBP14.8□□□□□ -0.04
NUP54-216ENST00000514901 ARHGEF38Q9NXL2 777 aa14.8□□□□□ -0.04
NUP54-216ENST00000514901 COX16Q9P0S2 106 aa14.8□□□□□ -0.04
NUP54-216ENST00000514901 IMPACTQ9P2X3 320 aa14.8□□□□□ -0.04
NUP54-216ENST00000514901 CNOT8Q9UFF9 292 aaKnown RBP14.8□□□□□ -0.04
NUP54-216ENST00000514901 TYW5A2RUC4 315 aaKnown RBP14.79□□□□□ -0.04
NUP54-216ENST00000514901 PI15O43692 258 aa14.79□□□□□ -0.04
NUP54-216ENST00000514901 MOCS2O96007 188 aaPredicted RBP14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms