RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 UBE3AQ05086 875 aa8.65□□□□□ -1.02
USP54-215ENST00000497106 ADCY1Q08828 1119 aa8.65□□□□□ -1.02
USP54-215ENST00000497106 ZNF235Q14590 738 aa8.65□□□□□ -1.02
USP54-215ENST00000497106 NOMO1Q15155 1222 aa8.65□□□□□ -1.02
USP54-215ENST00000497106 TRIP4Q15650 581 aaPredicted RBP8.65□□□□□ -1.02
USP54-215ENST00000497106 NAPEPLDQ6IQ20 393 aa8.65□□□□□ -1.02
USP54-215ENST00000497106 MICALCLQ6ZW33 695 aa8.65□□□□□ -1.02
USP54-215ENST00000497106 DNAAF3Q8N9W5 541 aa8.65□□□□□ -1.02
USP54-215ENST00000497106 DQX1Q8TE96 717 aaKnown RBP8.65□□□□□ -1.02
USP54-215ENST00000497106 AENQ8WTP8 325 aaKnown RBP8.65□□□□□ -1.02
USP54-215ENST00000497106 RAPGEF5Q92565 580 aa8.65□□□□□ -1.02
USP54-215ENST00000497106 PLD4Q96BZ4 506 aa8.65□□□□□ -1.02
USP54-215ENST00000497106 ACSF2Q96CM8 615 aaPredicted RBP8.65□□□□□ -1.02
USP54-215ENST00000497106 HAPLN3Q96S86 360 aa8.65□□□□□ -1.02
USP54-215ENST00000497106 AAR2Q9Y312 384 aaKnown RBP8.65□□□□□ -1.02
USP54-215ENST00000497106 MAD1L1Q9Y6D9 718 aa8.65□□□□□ -1.02
USP54-215ENST00000497106 IQANK1A0A1B0GTG1 560 aa8.65□□□□□ -1.03
USP54-215ENST00000497106 GOLGA8CPA6NN73 597 aa8.65□□□□□ -1.03
USP54-215ENST00000497106 SLC38A8A6NNN8 435 aa8.65□□□□□ -1.03
USP54-215ENST00000497106 MSH2P43246 934 aa8.65□□□□□ -1.03
USP54-215ENST00000497106 KCNJ1P48048 391 aa8.65□□□□□ -1.03
USP54-215ENST00000497106 GEMP55040 296 aa8.65□□□□□ -1.03
USP54-215ENST00000497106 TTC39BQ5VTQ0 682 aaPredicted RBP8.65□□□□□ -1.03
USP54-215ENST00000497106 OTUD6BQ8N6M0 293 aa8.65□□□□□ -1.03
USP54-215ENST00000497106 ATG4AQ8WYN0 398 aa8.65□□□□□ -1.03
USP54-215ENST00000497106 BTN2A3PQ96KV6 586 aa8.65□□□□□ -1.03
USP54-215ENST00000497106 GDAP1L1Q96MZ0 367 aa8.65□□□□□ -1.03
USP54-215ENST00000497106 RAD9AQ99638 391 aa8.65□□□□□ -1.03
USP54-215ENST00000497106 SENP1Q9P0U3 644 aa8.65□□□□□ -1.03
USP54-215ENST00000497106 DMGDHQ9UI17 866 aaKnown RBP8.65□□□□□ -1.03
USP54-215ENST00000497106 FBXW11Q9UKB1 542 aa8.65□□□□□ -1.03
USP54-215ENST00000497106 NAALADL1Q9UQQ1 740 aa8.65□□□□□ -1.03
USP54-215ENST00000497106 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP8.64□□□□□ -1.03
USP54-215ENST00000497106 KRT15P19012 456 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 ZNF177Q13360 481 aaPredicted RBP8.64□□□□□ -1.03
USP54-215ENST00000497106 DPYSL3Q14195 570 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 NAA30Q147X3 362 aaPredicted RBP8.64□□□□□ -1.03
USP54-215ENST00000497106 DUPD1Q68J44 220 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 CCDC13Q8IYE1 715 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 FAM71DQ8N9W8 422 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 USP13Q92995 863 aaPredicted RBP8.64□□□□□ -1.03
USP54-215ENST00000497106 RPRD1AQ96P16 312 aaPredicted RBP8.64□□□□□ -1.03
USP54-215ENST00000497106 NPY6RQ99463 290 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 PHACTR1Q9C0D0 580 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 OSBPL2Q9H1P3 480 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 SMOC2Q9H3U7 446 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 CSNK1G1Q9HCP0 422 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 RAB6BQ9NRW1 208 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 OR12D3Q9UGF7 316 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 EVPLQ92817 2033 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 EXOC1LA0A1B0GW35 172 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 MTMR11A4FU01 709 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 C3orf70A6NLC5 250 aaPredicted RBP8.64□□□□□ -1.03
USP54-215ENST00000497106 CXCL14O95715 111 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 CBX1P83916 185 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 PDIA2Q13087 525 aaKnown RBP8.64□□□□□ -1.03
USP54-215ENST00000497106 LIMS2Q7Z4I7 341 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 TTC16Q8NEE8 873 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 HTR3CQ8WXA8 447 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 TOP1MTQ969P6 601 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 RBM15Q96T37 977 aaKnown RBP eCLIP8.64□□□□□ -1.03
USP54-215ENST00000497106 TRIM7Q9C029 511 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 XPO7Q9UIA9 1087 aaKnown RBP8.64□□□□□ -1.03
USP54-215ENST00000497106 A0A1W2PQH9 124 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 BCLAF3A2AJT9 711 aaKnown RBP8.64□□□□□ -1.03
USP54-215ENST00000497106 SMIM23A6NLE4 172 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 MEIS3P2A8K0S8 358 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 NT5C1B-RDH14C9J2C7 533 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 CHADO15335 359 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 DUSP4Q13115 394 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 DDR2Q16832 855 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 AGBL2Q5U5Z8 902 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 OTOP2Q7RTS6 562 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 GIPC2Q8TF65 315 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 LRRC39Q96DD0 335 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 FSD1LQ9BXM9 530 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 UBE2OQ9C0C9 1292 aaKnown RBP8.64□□□□□ -1.03
USP54-215ENST00000497106 ASAH2Q9NR71 780 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 CHST7Q9NS84 486 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 NSMCE4AQ9NXX6 385 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 SCN10AQ9Y5Y9 1956 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 TRAV19A0A0A6YYK7 116 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 ZNF197O14709 1029 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 IRAK2O43187 625 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 DDX6P26196 483 aaKnown RBP eCLIP8.64□□□□□ -1.03
USP54-215ENST00000497106 LLGL2Q6P1M3 1020 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 METTL3Q86U44 580 aaKnown RBP8.64□□□□□ -1.03
USP54-215ENST00000497106 PGAP3Q96FM1 320 aaPredicted RBP8.64□□□□□ -1.03
USP54-215ENST00000497106 ZYG11BQ9C0D3 744 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 DNPEPQ9ULA0 475 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 TLR6Q9Y2C9 796 aa8.64□□□□□ -1.03
USP54-215ENST00000497106 RB1P06400 928 aa8.63□□□□□ -1.03
USP54-215ENST00000497106 CSF2RAP15509 400 aa8.63□□□□□ -1.03
USP54-215ENST00000497106 RPL34P49207 117 aaKnown RBP8.63□□□□□ -1.03
USP54-215ENST00000497106 RENBPP51606 427 aa8.63□□□□□ -1.03
USP54-215ENST00000497106 RAB30Q15771 203 aa8.63□□□□□ -1.03
USP54-215ENST00000497106 MIB1Q86YT6 1006 aa8.63□□□□□ -1.03
USP54-215ENST00000497106 CTAGE3PQ8IX95 158 aa8.63□□□□□ -1.03
USP54-215ENST00000497106 ATAD1Q8NBU5 361 aa8.63□□□□□ -1.03
USP54-215ENST00000497106 ZNF461Q8TAF7 563 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 165.3 ms