RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 C10orf120Q5SQS8 335 aa13.12□□□□□ -0.31
VPS52-220ENST00000493674 HECTD3Q5T447 861 aa13.12□□□□□ -0.31
VPS52-220ENST00000493674 MANEALQ5VSG8 457 aa13.12□□□□□ -0.31
VPS52-220ENST00000493674 DRICH1Q6PGQ1 229 aaPredicted RBP13.12□□□□□ -0.31
VPS52-220ENST00000493674 GAREM2Q75VX8 874 aa13.12□□□□□ -0.31
VPS52-220ENST00000493674 Q7L0L9 218 aa13.12□□□□□ -0.31
VPS52-220ENST00000493674 TADA2BQ86TJ2 420 aa13.12□□□□□ -0.31
VPS52-220ENST00000493674 PYROXD2Q8N2H3 581 aa13.12□□□□□ -0.31
VPS52-220ENST00000493674 PCDH19Q8TAB3 1148 aa13.12□□□□□ -0.31
VPS52-220ENST00000493674 MICAL1Q8TDZ2 1067 aa13.12□□□□□ -0.31
VPS52-220ENST00000493674 MRPL38Q96DV4 380 aaKnown RBP13.12□□□□□ -0.31
VPS52-220ENST00000493674 ZNF512Q96ME7 567 aaPredicted RBP13.12□□□□□ -0.31
VPS52-220ENST00000493674 GUCD1Q96NT3 240 aa13.12□□□□□ -0.31
VPS52-220ENST00000493674 CSPG4P5Q96PW8 444 aa13.12□□□□□ -0.31
VPS52-220ENST00000493674 HAPLN3Q96S86 360 aa13.12□□□□□ -0.31
VPS52-220ENST00000493674 HEMGNQ9BXL5 484 aa13.12□□□□□ -0.31
VPS52-220ENST00000493674 TKTL2Q9H0I9 626 aa13.12□□□□□ -0.31
VPS52-220ENST00000493674 SLITRK6Q9H5Y7 841 aa13.12□□□□□ -0.31
VPS52-220ENST00000493674 WDCPQ9H6R7 721 aa13.12□□□□□ -0.31
VPS52-220ENST00000493674 ZDHHC7Q9NXF8 308 aa13.12□□□□□ -0.31
VPS52-220ENST00000493674 CWC15Q9P013 229 aaKnown RBP13.12□□□□□ -0.31
VPS52-220ENST00000493674 COX16Q9P0S2 106 aa13.12□□□□□ -0.31
VPS52-220ENST00000493674 R3HDM2Q9Y2K5 976 aaKnown RBP13.12□□□□□ -0.31
VPS52-220ENST00000493674 HCFC2Q9Y5Z7 792 aa13.12□□□□□ -0.31
VPS52-220ENST00000493674 ANKRD36A6QL64 1941 aa13.11□□□□□ -0.31
VPS52-220ENST00000493674 KIAA1549LQ6ZVL6 1849 aa13.11□□□□□ -0.31
VPS52-220ENST00000493674 GOLGA6L10A0A0M3HER8 536 aa13.11□□□□□ -0.31
VPS52-220ENST00000493674 FAM72CH0Y354 149 aa13.11□□□□□ -0.31
VPS52-220ENST00000493674 COCHO43405 550 aa13.11□□□□□ -0.31
VPS52-220ENST00000493674 PFKLP17858 780 aa13.11□□□□□ -0.31
VPS52-220ENST00000493674 CHRNA3P32297 505 aa13.11□□□□□ -0.31
VPS52-220ENST00000493674 HTR7P34969 479 aa13.11□□□□□ -0.31
VPS52-220ENST00000493674 FNTAP49354 379 aa13.11□□□□□ -0.31
VPS52-220ENST00000493674 KPNA1P52294 538 aaPredicted RBP13.11□□□□□ -0.31
VPS52-220ENST00000493674 TBX4P57082 545 aa13.11□□□□□ -0.31
VPS52-220ENST00000493674 TFDP2Q14188 446 aa13.11□□□□□ -0.31
VPS52-220ENST00000493674 LLGL1Q15334 1064 aa13.11□□□□□ -0.31
VPS52-220ENST00000493674 CCNG2Q16589 344 aa13.11□□□□□ -0.31
VPS52-220ENST00000493674 PABPC1LQ4VXU2 614 aaKnown RBP13.11□□□□□ -0.31
VPS52-220ENST00000493674 ZFYVE27Q5T4F4 411 aa13.11□□□□□ -0.31
VPS52-220ENST00000493674 FAM72AQ5TYM5 149 aa13.11□□□□□ -0.31
VPS52-220ENST00000493674 FAM72DQ6L9T8 149 aa13.11□□□□□ -0.31
VPS52-220ENST00000493674 TTC27Q6P3X3 843 aa13.11□□□□□ -0.31
VPS52-220ENST00000493674 ADAT2Q7Z6V5 191 aaKnown RBP13.11□□□□□ -0.31
VPS52-220ENST00000493674 FAM72BQ86X60 149 aa13.11□□□□□ -0.31
VPS52-220ENST00000493674 HS6ST3Q8IZP7 471 aa13.11□□□□□ -0.31
VPS52-220ENST00000493674 PLD5Q8N7P1 536 aa13.11□□□□□ -0.31
VPS52-220ENST00000493674 SLC35B2Q8TB61 432 aa13.11□□□□□ -0.31
VPS52-220ENST00000493674 SLCO2A1Q92959 643 aa13.11□□□□□ -0.31
VPS52-220ENST00000493674 ZNF707Q96C28 371 aaPredicted RBP13.11□□□□□ -0.31
VPS52-220ENST00000493674 ZFRQ96KR1 1074 aaKnown RBP13.11□□□□□ -0.31
VPS52-220ENST00000493674 GAS2L1Q99501 681 aaPredicted RBP13.11□□□□□ -0.31
VPS52-220ENST00000493674 CDCA3Q99618 268 aaPredicted RBP13.11□□□□□ -0.31
VPS52-220ENST00000493674 CALN1Q9BXU9 219 aa13.11□□□□□ -0.31
VPS52-220ENST00000493674 FRMD8P1Q9BZ68 369 aaPredicted RBP13.11□□□□□ -0.31
VPS52-220ENST00000493674 DCLK3Q9C098 648 aa13.11□□□□□ -0.31
VPS52-220ENST00000493674 DDX47Q9H0S4 455 aaKnown RBP13.11□□□□□ -0.31
VPS52-220ENST00000493674 ARHGEF4Q9NR80 690 aa13.11□□□□□ -0.31
VPS52-220ENST00000493674 PCYOX1Q9UHG3 505 aa13.11□□□□□ -0.31
VPS52-220ENST00000493674 DPP7Q9UHL4 492 aa13.11□□□□□ -0.31
VPS52-220ENST00000493674 RASAL2Q9UJF2 1139 aa13.11□□□□□ -0.31
VPS52-220ENST00000493674 DNMT3LQ9UJW3 386 aa13.11□□□□□ -0.31
VPS52-220ENST00000493674 EYSQ5T1H1 3165 aa13.1□□□□□ -0.31
VPS52-220ENST00000493674 C2orf78A6NCI8 922 aa13.1□□□□□ -0.31
VPS52-220ENST00000493674 SOBPA7XYQ1 873 aa13.1□□□□□ -0.31
VPS52-220ENST00000493674 H3BRJ5 948 aa13.1□□□□□ -0.31
VPS52-220ENST00000493674 APOC4-APOC2K7ER74 178 aa13.1□□□□□ -0.31
VPS52-220ENST00000493674 NRG2O14511 850 aaPredicted RBP13.1□□□□□ -0.31
VPS52-220ENST00000493674 CCL16O15467 120 aa13.1□□□□□ -0.31
VPS52-220ENST00000493674 CST8O60676 142 aa13.1□□□□□ -0.31
VPS52-220ENST00000493674 MOSPD3O75425 235 aa13.1□□□□□ -0.31
VPS52-220ENST00000493674 PAGE1O75459 146 aa13.1□□□□□ -0.31
VPS52-220ENST00000493674 RFPL2O75678 378 aa13.1□□□□□ -0.31
VPS52-220ENST00000493674 CSPG5O95196 566 aa13.1□□□□□ -0.31
VPS52-220ENST00000493674 APOC2P02655 101 aa13.1□□□□□ -0.31
VPS52-220ENST00000493674 GOT1P17174 413 aa13.1□□□□□ -0.31
VPS52-220ENST00000493674 TGM2P21980 687 aa13.1□□□□□ -0.31
VPS52-220ENST00000493674 GABRR2P28476 465 aa13.1□□□□□ -0.31
VPS52-220ENST00000493674 CDC25CP30307 473 aa13.1□□□□□ -0.31
VPS52-220ENST00000493674 ATP5C1P36542 298 aaKnown RBP13.1□□□□□ -0.31
VPS52-220ENST00000493674 MTA1Q13330 715 aa13.1□□□□□ -0.31
VPS52-220ENST00000493674 TAF12Q16514 161 aa13.1□□□□□ -0.31
VPS52-220ENST00000493674 ERCC6LQ2NKX8 1250 aa13.1□□□□□ -0.31
VPS52-220ENST00000493674 GLE1Q53GS7 698 aaKnown RBP13.1□□□□□ -0.31
VPS52-220ENST00000493674 ODF2Q5BJF6 829 aa13.1□□□□□ -0.31
VPS52-220ENST00000493674 PPP6R3Q5H9R7 873 aaPredicted RBP13.1□□□□□ -0.31
VPS52-220ENST00000493674 TEX35Q5T0J7 233 aa13.1□□□□□ -0.31
VPS52-220ENST00000493674 PIK3R6Q5UE93 754 aa13.1□□□□□ -0.31
VPS52-220ENST00000493674 ZNF683Q8IZ20 524 aa13.1□□□□□ -0.31
VPS52-220ENST00000493674 ELMOD1Q8N336 334 aa13.1□□□□□ -0.31
VPS52-220ENST00000493674 LEMD2Q8NC56 503 aa13.1□□□□□ -0.31
VPS52-220ENST00000493674 VN1R2Q8NFZ6 395 aa13.1□□□□□ -0.31
VPS52-220ENST00000493674 NKD2Q969F2 451 aaPredicted RBP13.1□□□□□ -0.31
VPS52-220ENST00000493674 AZIN2Q96A70 460 aa13.1□□□□□ -0.31
VPS52-220ENST00000493674 PLD4Q96BZ4 506 aa13.1□□□□□ -0.31
VPS52-220ENST00000493674 C1orf74Q96LT6 269 aa13.1□□□□□ -0.31
VPS52-220ENST00000493674 KRT12Q99456 494 aa13.1□□□□□ -0.31
VPS52-220ENST00000493674 RNF38Q9H0F5 515 aa13.1□□□□□ -0.31
VPS52-220ENST00000493674 ANKZF1Q9H8Y5 726 aa13.1□□□□□ -0.31
VPS52-220ENST00000493674 HOMER3Q9NSC5 361 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms