RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 CACNG3O60359 315 aa15.34■□□□□ 0.05
USP4-212ENST00000486549 ACSL4O60488 711 aa15.34■□□□□ 0.05
USP4-212ENST00000486549 LATS1O95835 1130 aa15.34■□□□□ 0.05
USP4-212ENST00000486549 APOEP02649 317 aa15.34■□□□□ 0.05
USP4-212ENST00000486549 TNFAIP3P21580 790 aa15.34■□□□□ 0.05
USP4-212ENST00000486549 MMP8P22894 467 aa15.34■□□□□ 0.05
USP4-212ENST00000486549 GBP1P32455 592 aa15.34■□□□□ 0.05
USP4-212ENST00000486549 NOS2P35228 1153 aa15.34■□□□□ 0.05
USP4-212ENST00000486549 GRIA2P42262 883 aa15.34■□□□□ 0.05
USP4-212ENST00000486549 SULT1E1P49888 294 aa15.34■□□□□ 0.05
USP4-212ENST00000486549 CCR3P51677 355 aa15.34■□□□□ 0.05
USP4-212ENST00000486549 CENPCQ03188 943 aa15.34■□□□□ 0.05
USP4-212ENST00000486549 NME3Q13232 169 aa15.34■□□□□ 0.05
USP4-212ENST00000486549 FBXO43Q4G163 708 aa15.34■□□□□ 0.05
USP4-212ENST00000486549 FIGNQ5HY92 759 aa15.34■□□□□ 0.05
USP4-212ENST00000486549 ADGRF1Q5T601 910 aa15.34■□□□□ 0.05
USP4-212ENST00000486549 FYB2Q5VWT5 728 aa15.34■□□□□ 0.05
USP4-212ENST00000486549 RFWD3Q6PCD5 774 aa15.34■□□□□ 0.05
USP4-212ENST00000486549 ASCL5Q7RTU5 278 aa15.34■□□□□ 0.05
USP4-212ENST00000486549 FAM217AQ8IXS0 508 aa15.34■□□□□ 0.05
USP4-212ENST00000486549 MAML2Q8IZL2 1156 aaPredicted RBP15.34■□□□□ 0.05
USP4-212ENST00000486549 SPEM1Q8N4L4 309 aa15.34■□□□□ 0.05
USP4-212ENST00000486549 RNF34Q969K3 372 aa15.34■□□□□ 0.05
USP4-212ENST00000486549 SLC39A13Q96H72 371 aa15.34■□□□□ 0.05
USP4-212ENST00000486549 EDEM3Q9BZQ6 932 aa15.34■□□□□ 0.05
USP4-212ENST00000486549 HAUS4Q9H6D7 363 aa15.34■□□□□ 0.05
USP4-212ENST00000486549 C2orf42Q9NWW7 574 aa15.34■□□□□ 0.05
USP4-212ENST00000486549 ADAM22Q9P0K1 906 aa15.34■□□□□ 0.05
USP4-212ENST00000486549 A0A1W2PQJ5 194 aa15.33■□□□□ 0.04
USP4-212ENST00000486549 TBC1D3BA6NDS4 549 aa15.33■□□□□ 0.04
USP4-212ENST00000486549 K7EQS6 105 aa15.33■□□□□ 0.04
USP4-212ENST00000486549 M0QYT0 321 aa15.33■□□□□ 0.04
USP4-212ENST00000486549 PENKP01210 267 aaPredicted RBP15.33■□□□□ 0.04
USP4-212ENST00000486549 IGLV3-25P01717 112 aa15.33■□□□□ 0.04
USP4-212ENST00000486549 SKILP12757 684 aa15.33■□□□□ 0.04
USP4-212ENST00000486549 SLC6A4P31645 630 aa15.33■□□□□ 0.04
USP4-212ENST00000486549 FLT3P36888 993 aa15.33■□□□□ 0.04
USP4-212ENST00000486549 SCNN1AP37088 669 aa15.33■□□□□ 0.04
USP4-212ENST00000486549 MATKP42679 507 aa15.33■□□□□ 0.04
USP4-212ENST00000486549 CXCL12P48061 93 aa15.33■□□□□ 0.04
USP4-212ENST00000486549 DGKGP49619 791 aa15.33■□□□□ 0.04
USP4-212ENST00000486549 KLHL30Q0D2K2 578 aa15.33■□□□□ 0.04
USP4-212ENST00000486549 MPPE1Q53F39 396 aa15.33■□□□□ 0.04
USP4-212ENST00000486549 C2orf27AQ580R0 203 aa15.33■□□□□ 0.04
USP4-212ENST00000486549 C10orf76Q5T2E6 689 aa15.33■□□□□ 0.04
USP4-212ENST00000486549 NADSYN1Q6IA69 706 aa15.33■□□□□ 0.04
USP4-212ENST00000486549 PHTF2Q8N3S3 785 aa15.33■□□□□ 0.04
USP4-212ENST00000486549 TERB1Q8NA31 727 aa15.33■□□□□ 0.04
USP4-212ENST00000486549 PRMT8Q9NR22 394 aaPredicted RBP15.33■□□□□ 0.04
USP4-212ENST00000486549 POLR3BQ9NW08 1133 aaPredicted RBP15.33■□□□□ 0.04
USP4-212ENST00000486549 ZSCAN32Q9NX65 697 aa15.33■□□□□ 0.04
USP4-212ENST00000486549 AIPL1Q9NZN9 384 aa15.33■□□□□ 0.04
USP4-212ENST00000486549 XPO7Q9UIA9 1087 aaKnown RBP15.33■□□□□ 0.04
USP4-212ENST00000486549 STAP1Q9ULZ2 295 aa15.33■□□□□ 0.04
USP4-212ENST00000486549 ZFHX2Q9C0A1 2572 aaPredicted RBP15.33■□□□□ 0.04
USP4-212ENST00000486549 TMCO5BA8MYB1 307 aa15.32■□□□□ 0.04
USP4-212ENST00000486549 ATG13O75143 517 aa15.32■□□□□ 0.04
USP4-212ENST00000486549 GJB6O95452 261 aa15.32■□□□□ 0.04
USP4-212ENST00000486549 GYPCP04921 128 aa15.32■□□□□ 0.04
USP4-212ENST00000486549 CALB1P05937 261 aa15.32■□□□□ 0.04
USP4-212ENST00000486549 TFE3P19532 575 aaPredicted RBP15.32■□□□□ 0.04
USP4-212ENST00000486549 TIE1P35590 1138 aa15.32■□□□□ 0.04
USP4-212ENST00000486549 SGSHP51688 502 aa15.32■□□□□ 0.04
USP4-212ENST00000486549 PTP4A2Q12974 167 aa15.32■□□□□ 0.04
USP4-212ENST00000486549 PREPLQ4J6C6 727 aaPredicted RBP15.32■□□□□ 0.04
USP4-212ENST00000486549 TDRD12Q587J7 1177 aaKnown RBP15.32■□□□□ 0.04
USP4-212ENST00000486549 FAM133BQ5BKY9 247 aaKnown RBP15.32■□□□□ 0.04
USP4-212ENST00000486549 OTUD1Q5VV17 481 aaPredicted RBP15.32■□□□□ 0.04
USP4-212ENST00000486549 RAP1GAP2Q684P5 730 aa15.32■□□□□ 0.04
USP4-212ENST00000486549 ZNF571Q7Z3V5 609 aaPredicted RBP15.32■□□□□ 0.04
USP4-212ENST00000486549 CHSY1Q86X52 802 aa15.32■□□□□ 0.04
USP4-212ENST00000486549 PHF13Q86YI8 300 aaPredicted RBP15.32■□□□□ 0.04
USP4-212ENST00000486549 EMC1Q8N766 993 aa15.32■□□□□ 0.04
USP4-212ENST00000486549 TMA16Q96EY4 203 aaKnown RBP15.32■□□□□ 0.04
USP4-212ENST00000486549 TBCBQ99426 244 aa15.32■□□□□ 0.04
USP4-212ENST00000486549 NPY6RQ99463 290 aa15.32■□□□□ 0.04
USP4-212ENST00000486549 SYT11Q9BT88 431 aa15.32■□□□□ 0.04
USP4-212ENST00000486549 NUCKS1Q9H1E3 243 aaKnown RBP15.32■□□□□ 0.04
USP4-212ENST00000486549 ZDHHC4Q9NPG8 344 aa15.32■□□□□ 0.04
USP4-212ENST00000486549 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.32■□□□□ 0.044e-6■■■■□ 20.5
USP4-212ENST00000486549 TAS2R14Q9NYV8 317 aa15.32■□□□□ 0.04
USP4-212ENST00000486549 STOML2Q9UJZ1 356 aa15.32■□□□□ 0.04
USP4-212ENST00000486549 TBL1XO60907 577 aa15.31■□□□□ 0.04
USP4-212ENST00000486549 ABCB4P21439 1286 aa15.31■□□□□ 0.04
USP4-212ENST00000486549 CASP14P31944 242 aa15.31■□□□□ 0.04
USP4-212ENST00000486549 CCR1P32246 355 aa15.31■□□□□ 0.04
USP4-212ENST00000486549 PRKCIP41743 596 aa15.31■□□□□ 0.04
USP4-212ENST00000486549 ZBED6P86452 979 aa15.31■□□□□ 0.04
USP4-212ENST00000486549 DEUP1Q05D60 604 aa15.31■□□□□ 0.04
USP4-212ENST00000486549 EMC10Q5UCC4 262 aa15.31■□□□□ 0.04
USP4-212ENST00000486549 TRNP1Q6NT89 227 aa15.31■□□□□ 0.04
USP4-212ENST00000486549 NUDT18Q6ZVK8 323 aa15.31■□□□□ 0.04
USP4-212ENST00000486549 MON1BQ7L1V2 547 aa15.31■□□□□ 0.04
USP4-212ENST00000486549 CCDC33Q8N5R6 958 aa15.31■□□□□ 0.04
USP4-212ENST00000486549 ALLCQ8N6M5 410 aa15.31■□□□□ 0.04
USP4-212ENST00000486549 ATP6V0D2Q8N8Y2 350 aa15.31■□□□□ 0.04
USP4-212ENST00000486549 CCDC26Q8TAB7 109 aa15.31■□□□□ 0.04
USP4-212ENST00000486549 OLIG1Q8TAK6 271 aa15.31■□□□□ 0.04
USP4-212ENST00000486549 USP33Q8TEY7 942 aa15.31■□□□□ 0.04
USP4-212ENST00000486549 AZIN2Q96A70 460 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms