RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 CNGB3Q9NQW8 809 aa12.81□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 OLA1Q9NTK5 396 aaKnown RBP12.81□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 STRIP2Q9ULQ0 834 aa12.81□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 ZBTB24O43167 697 aaPredicted RBP12.8□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 LATS1O95835 1130 aa12.8□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 IGLV3-27P01718 113 aa12.8□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 PAEPP09466 180 aa12.8□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 SETSIPP0DME0 302 aa12.8□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 NCAM1P13591 858 aa12.8□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 TBXAS1P24557 533 aaPredicted RBP12.8□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 CD6P30203 668 aa12.8□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 HLA-FP30511 346 aa12.8□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 MAPK8P45983 427 aa12.8□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 SLC8A3P57103 927 aa12.8□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 DAOAP59103 153 aa12.8□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 YWHAEP62258 255 aaKnown RBP12.8□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 GFPT1Q06210 699 aaPredicted RBP12.8□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 ADIGQ0VDE8 80 aa12.8□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 CNGA2Q16280 664 aa12.8□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 DCAF17Q5H9S7 520 aaPredicted RBP12.8□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 TCERG1LQ5VWI1 586 aa12.8□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 TTI2Q6NXR4 508 aa12.8□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 PMF1Q6P1K2 205 aa12.8□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 MSANTD2Q6P1R3 559 aa12.8□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 ANKS1BQ7Z6G8 1248 aa12.8□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 TMPRSS6Q8IU80 811 aa12.8□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.8□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 CADM4Q8NFZ8 388 aa12.8□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 UBA3Q8TBC4 463 aa12.8□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 GATA6Q92908 595 aa12.8□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 FOXJ1Q92949 421 aa12.8□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 ERLEC1Q96DZ1 483 aa12.8□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 DHTKD1Q96HY7 919 aaPredicted RBP12.8□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 LMLNQ96KR4 655 aa12.8□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 HSPA12BQ96MM6 686 aa12.8□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 CEP63Q96MT8 703 aa12.8□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 TSG101Q99816 390 aa12.8□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 PRDM16Q9HAZ2 1276 aa12.8□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 METTL14Q9HCE5 456 aaKnown RBP12.8□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 ABCC13Q9NSE7 274 aa12.8□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 SFMBT1Q9UHJ3 866 aa12.8□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 FAM208BQ5VWN6 2430 aa12.79□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 FREM2Q5SZK8 3169 aa12.79□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 FAM221BA6H8Z2 402 aa12.79□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 PPP1R3GB7ZBB8 358 aa12.79□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 SMC2O95347 1197 aa12.79□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 CYBBP04839 570 aa12.79□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 CFIP05156 583 aa12.79□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 PRKCHP24723 683 aa12.79□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 TPMTP51580 245 aa12.79□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 ZNF445P59923 1031 aa12.79□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 SLC14A1Q13336 389 aa12.79□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 CAMK2GQ13555 558 aaPredicted RBP12.79□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 E2F5Q15329 346 aa12.79□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 MPPE1Q53F39 396 aa12.79□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 ADGRF1Q5T601 910 aa12.79□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 RSRC2Q7L4I2 434 aaKnown RBP12.79□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 ADIPOR2Q86V24 386 aa12.79□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 UCMAQ8WVF2 138 aa12.79□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 SORCS1Q8WY21 1168 aa12.79□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 EDEM1Q92611 657 aa12.79□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 SMARCE1Q969G3 411 aa12.79□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 AZIN2Q96A70 460 aa12.79□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 TOE1Q96GM8 510 aaKnown RBP12.79□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 IRX2Q9BZI1 471 aaPredicted RBP12.79□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 TMEM245Q9H330 911 aa12.79□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 LRRC4Q9HBW1 653 aa12.79□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 HESX1Q9UBX0 185 aa12.79□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 CNTN6Q9UQ52 1028 aa12.79□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 LAMA5O15230 3695 aa12.78□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 C1QTNF9BB2RNN3 333 aa12.78□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 P4HA2O15460 535 aa12.78□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 FYNP06241 537 aa12.78□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 C1QTNF9P0C862 333 aa12.78□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 OXTRP30559 389 aa12.78□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 HARS2P49590 506 aaKnown RBP12.78□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 FAM193AP78312 1265 aa12.78□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 RING1Q06587 406 aa12.78□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 LRMPQ12912 555 aa12.78□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 STARD3Q14849 445 aa12.78□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 PTPRNQ16849 979 aa12.78□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 FAM133BQ5BKY9 247 aaKnown RBP12.78□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 MPP7Q5T2T1 576 aa12.78□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 MINDY1Q8N5J2 469 aa12.78□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 OR2I1PQ8NGU4 316 aa12.78□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 DDI1Q8WTU0 396 aa12.78□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 IRGQQ8WZA9 623 aa12.78□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 KAT5Q92993 513 aa12.78□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 TMA16Q96EY4 203 aaKnown RBP12.78□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 SIPA1Q96FS4 1042 aa12.78□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 HSFY1Q96LI6 401 aa12.78□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 SCNM1Q9BWG6 230 aa12.78□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 SLC32A1Q9H598 525 aa12.78□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 MAN1B1Q9UKM7 699 aa12.78□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.78□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 PLXNB3Q9ULL4 1909 aa12.78□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 PKD1L2Q7Z442 2459 aa12.78□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 DSPP15924 2871 aaKnown RBP12.77□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 METTL12A8MUP2 240 aa12.77□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 MSI1O43347 362 aaKnown RBP12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms