RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 SPATA2LQ8IUW3 424 aaPredicted RBP5.08□□□□□ -1.6
USP4-209ENST00000475873 FAM114A1Q8IWE2 563 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 GALNT11Q8NCW6 608 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 TMEM161BQ8NDZ6 487 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 KIFAP3Q92845 792 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 TNFRSF25Q93038 417 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 MARVELD3Q96A59 401 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 MOCOSQ96EN8 888 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 ABHD17AQ96GS6 310 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 SERAC1Q96JX3 654 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 DRC1Q96MC2 740 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 XPO6Q96QU8 1125 aaKnown RBP5.08□□□□□ -1.6
USP4-209ENST00000475873 RUSC1Q9BVN2 902 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 BHMT2Q9H2M3 363 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 SGK2Q9HBY8 427 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 TUFT1Q9NNX1 390 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 CASS4Q9NQ75 786 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 PRSS16Q9NQE7 514 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 ELOVL2Q9NXB9 296 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 ARHGAP20Q9P2F6 1191 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 SH3BP1Q9Y3L3 701 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 FBN1P35555 2871 aaKnown RBP5.08□□□□□ -1.6
USP4-209ENST00000475873 UNC13CQ8NB66 2214 aa5.08□□□□□ -1.6
USP4-209ENST00000475873 COL6A5A8TX70 2615 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 PRAMEF33A0A0G2JMD5 474 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 CCDC196A0A1B0GTZ2 297 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 ARHGAP10A1A4S6 786 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 BHMG1C9JSJ3 638 aaPredicted RBP5.07□□□□□ -1.6
USP4-209ENST00000475873 CCER2I3L3R5 266 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 K7ESM1 405 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 NPC1O15118 1278 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 CLDN3O15551 220 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 LATO43561 262 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 PRAMEF10O60809 474 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 HIP1RO75146 1068 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 PIAS2O75928 621 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 DDAH2O95865 285 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 IGHDP01880 384 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 KLKB1P03952 638 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 ZDHHC11BP0C7U3 371 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 MAPTP10636 758 aaKnown RBP5.07□□□□□ -1.6
USP4-209ENST00000475873 ITIH1P19827 911 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 PAX3P23760 479 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 CDC25AP30304 524 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 TXKP42681 527 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 MYL7Q01449 175 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 EHHADHQ08426 723 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 SSRP1Q08945 709 aaKnown RBP5.07□□□□□ -1.6
USP4-209ENST00000475873 TMEM132DQ14C87 1099 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 CDKN3Q16667 212 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 EIF2S3LQ2VIR3 472 aaKnown RBP5.07□□□□□ -1.6
USP4-209ENST00000475873 TTC22Q5TAA0 569 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 VSTM1Q6UX27 236 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 SERPINA13PQ6UXR4 307 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 ZPBP2Q6X784 338 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 RBM44Q6ZP01 1051 aaKnown RBP5.07□□□□□ -1.6
USP4-209ENST00000475873 LIMS2Q7Z4I7 341 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 JAMLQ86YT9 394 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 ZNF276Q8N554 614 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 OXR1Q8N573 874 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 MFSD2AQ8NA29 543 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 SCAMP5Q8TAC9 235 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 CYB5D2Q8WUJ1 264 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 KBTBD7Q8WVZ9 684 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 RUFY2Q8WXA3 655 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 JPH3Q8WXH2 748 aaPredicted RBP5.07□□□□□ -1.6
USP4-209ENST00000475873 BRF1Q92994 677 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 GRAMD1AQ96CP6 724 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 FAM212AQ96EL1 285 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 PCED1BQ96HM7 432 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 KLF16Q9BXK1 252 aaPredicted RBP5.07□□□□□ -1.6
USP4-209ENST00000475873 ABCG4Q9H172 646 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 NEUROG2Q9H2A3 272 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 PABPC3Q9H361 631 aaKnown RBP5.07□□□□□ -1.6
USP4-209ENST00000475873 KMT5AQ9NQR1 393 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 PLSCR2Q9NRY7 297 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 DPP3Q9NY33 737 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 WDR35Q9P2L0 1181 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 CHORDC1Q9UHD1 332 aaPredicted RBP5.07□□□□□ -1.6
USP4-209ENST00000475873 CPSF3Q9UKF6 684 aaKnown RBP5.07□□□□□ -1.6
USP4-209ENST00000475873 TP53TG5Q9Y2B4 290 aa5.07□□□□□ -1.6
USP4-209ENST00000475873 TNRC6AQ8NDV7 1962 aaKnown RBP5.06□□□□□ -1.6
USP4-209ENST00000475873 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP5.06□□□□□ -1.6
USP4-209ENST00000475873 A0A1W2PP55 124 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 CPED1A4D0V7 1026 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 TISP43B9A030 160 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 C9orf172C9J069 976 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 AGRPO00253 132 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 NTN3O00634 580 aaPredicted RBP5.06□□□□□ -1.6
USP4-209ENST00000475873 MDM4O15151 490 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 OGTO15294 1046 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 MID1O15344 667 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 NVLO15381 856 aaKnown RBP5.06□□□□□ -1.6
USP4-209ENST00000475873 XPOTO43592 962 aaKnown RBP5.06□□□□□ -1.6
USP4-209ENST00000475873 DUX1O43812 170 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 VPS4BO75351 444 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 PDGFAP04085 211 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 RPA1P27694 616 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 PPP3CCP48454 512 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 CCR5P51681 352 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms