RNA–Protein interactions for RNA: ENST00000473924.1

DDX56-209, Transcript of DEAD-box helicase 56, humanhuman

TSL 5

Gene DDX56, Length 385 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-209ENST00000473924 TBCBQ99426 244 aa12.9□□□□□ -0.34
DDX56-209ENST00000473924 CHP1Q99653 195 aa12.9□□□□□ -0.34
DDX56-209ENST00000473924 P2RY13Q9BPV8 354 aa12.9□□□□□ -0.34
DDX56-209ENST00000473924 DDX50Q9BQ39 737 aaKnown RBP12.9□□□□□ -0.34
DDX56-209ENST00000473924 ISCUQ9H1K1 167 aa12.9□□□□□ -0.34
DDX56-209ENST00000473924 TMEM51Q9NW97 253 aa12.9□□□□□ -0.34
DDX56-209ENST00000473924 MYO1AQ9UBC5 1043 aa12.9□□□□□ -0.34
DDX56-209ENST00000473924 CNOT8Q9UFF9 292 aaKnown RBP12.9□□□□□ -0.34
DDX56-209ENST00000473924 SIT1Q9Y3P8 196 aa12.9□□□□□ -0.34
DDX56-209ENST00000473924 PAXBP1Q9Y5B6 917 aa12.9□□□□□ -0.34
DDX56-209ENST00000473924 SCINQ9Y6U3 715 aa12.9□□□□□ -0.34
DDX56-209ENST00000473924 COL4A3Q01955 1670 aa12.89□□□□□ -0.35
DDX56-209ENST00000473924 GOLGA6L6A8MZA4 724 aa12.89□□□□□ -0.35
DDX56-209ENST00000473924 TRDMT1O14717 391 aaKnown RBP12.89□□□□□ -0.35
DDX56-209ENST00000473924 HOXC11O43248 304 aaPredicted RBP12.89□□□□□ -0.35
DDX56-209ENST00000473924 ATMINO43313 823 aaPredicted RBP12.89□□□□□ -0.35
DDX56-209ENST00000473924 TSPAN3O60637 253 aa12.89□□□□□ -0.35
DDX56-209ENST00000473924 TFE3P19532 575 aaPredicted RBP12.89□□□□□ -0.35
DDX56-209ENST00000473924 AOC1P19801 751 aa12.89□□□□□ -0.35
DDX56-209ENST00000473924 GPD1P21695 349 aa12.89□□□□□ -0.35
DDX56-209ENST00000473924 TARSP26639 723 aaKnown RBP12.89□□□□□ -0.35
DDX56-209ENST00000473924 CDC25BP30305 580 aa12.89□□□□□ -0.35
DDX56-209ENST00000473924 CLCN5P51795 746 aa12.89□□□□□ -0.35
DDX56-209ENST00000473924 GRSF1Q12849 480 aaKnown RBP eCLIP12.89□□□□□ -0.35
DDX56-209ENST00000473924 MAPK8IP2Q13387 824 aaPredicted RBP12.89□□□□□ -0.35
DDX56-209ENST00000473924 PPP2R5DQ14738 602 aa12.89□□□□□ -0.35
DDX56-209ENST00000473924 SLC18A3Q16572 532 aa12.89□□□□□ -0.35
DDX56-209ENST00000473924 CDO1Q16878 200 aa12.89□□□□□ -0.35
DDX56-209ENST00000473924 MPPE1Q53F39 396 aa12.89□□□□□ -0.35
DDX56-209ENST00000473924 CWF19L1Q69YN2 538 aaKnown RBP12.89□□□□□ -0.35
DDX56-209ENST00000473924 TRNP1Q6NT89 227 aa12.89□□□□□ -0.35
DDX56-209ENST00000473924 CPXM2Q8N436 756 aa12.89□□□□□ -0.35
DDX56-209ENST00000473924 NAT16Q8N8M0 369 aa12.89□□□□□ -0.35
DDX56-209ENST00000473924 TC2NQ8N9U0 490 aa12.89□□□□□ -0.35
DDX56-209ENST00000473924 SPC24Q8NBT2 197 aa12.89□□□□□ -0.35
DDX56-209ENST00000473924 DDI1Q8WTU0 396 aa12.89□□□□□ -0.35
DDX56-209ENST00000473924 CD101Q93033 1021 aa12.89□□□□□ -0.35
DDX56-209ENST00000473924 NT5C3BQ969T7 300 aa12.89□□□□□ -0.35
DDX56-209ENST00000473924 AZIN2Q96A70 460 aa12.89□□□□□ -0.35
DDX56-209ENST00000473924 CHFRQ96EP1 664 aa12.89□□□□□ -0.35
DDX56-209ENST00000473924 PGAP3Q96FM1 320 aaPredicted RBP12.89□□□□□ -0.35
DDX56-209ENST00000473924 BTN2A3PQ96KV6 586 aa12.89□□□□□ -0.35
DDX56-209ENST00000473924 XPO6Q96QU8 1125 aaKnown RBP12.89□□□□□ -0.35
DDX56-209ENST00000473924 WDCPQ9H6R7 721 aa12.89□□□□□ -0.35
DDX56-209ENST00000473924 NHEJ1Q9H9Q4 299 aaPredicted RBP12.89□□□□□ -0.35
DDX56-209ENST00000473924 MRPL47Q9HD33 250 aaKnown RBP12.89□□□□□ -0.35
DDX56-209ENST00000473924 PIGVQ9NUD9 493 aa12.89□□□□□ -0.35
DDX56-209ENST00000473924 PLK2Q9NYY3 685 aa12.89□□□□□ -0.35
DDX56-209ENST00000473924 MARK1Q9P0L2 795 aa12.89□□□□□ -0.35
DDX56-209ENST00000473924 TRIOO75962 3097 aa12.89□□□□□ -0.35
DDX56-209ENST00000473924 GOLGA6L7A0A1B0GV03 622 aa12.88□□□□□ -0.35
DDX56-209ENST00000473924 TCRBV5S1A1TA0A578 114 aa12.88□□□□□ -0.35
DDX56-209ENST00000473924 TYW5A2RUC4 315 aaKnown RBP12.88□□□□□ -0.35
DDX56-209ENST00000473924 GOLGA6L3A6NEY3 463 aa12.88□□□□□ -0.35
DDX56-209ENST00000473924 C2CD4BA6NLJ0 364 aa12.88□□□□□ -0.35
DDX56-209ENST00000473924 KCNU1A8MYU2 1149 aa12.88□□□□□ -0.35
DDX56-209ENST00000473924 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.88□□□□□ -0.35
DDX56-209ENST00000473924 DCNP07585 359 aaKnown RBP12.88□□□□□ -0.35
DDX56-209ENST00000473924 TYRP14679 529 aa12.88□□□□□ -0.35
DDX56-209ENST00000473924 RDXP35241 583 aaKnown RBP12.88□□□□□ -0.35
DDX56-209ENST00000473924 PTPN9P43378 593 aa12.88□□□□□ -0.35
DDX56-209ENST00000473924 GALK1P51570 392 aa12.88□□□□□ -0.35
DDX56-209ENST00000473924 RPL7AP62424 266 aaKnown RBP12.88□□□□□ -0.35
DDX56-209ENST00000473924 MTA1Q13330 715 aa12.88□□□□□ -0.35
DDX56-209ENST00000473924 MAMLD1Q13495 774 aa12.88□□□□□ -0.35
DDX56-209ENST00000473924 EIF4EBP2Q13542 120 aaPredicted RBP12.88□□□□□ -0.35
DDX56-209ENST00000473924 LRRC32Q14392 662 aa12.88□□□□□ -0.35
DDX56-209ENST00000473924 C15orf59Q2T9L4 293 aaPredicted RBP12.88□□□□□ -0.35
DDX56-209ENST00000473924 CCDC14Q49A88 953 aa12.88□□□□□ -0.35
DDX56-209ENST00000473924 PREPLQ4J6C6 727 aaPredicted RBP12.88□□□□□ -0.35
DDX56-209ENST00000473924 BRMS1LQ5PSV4 323 aa12.88□□□□□ -0.35
DDX56-209ENST00000473924 OTUD1Q5VV17 481 aaPredicted RBP12.88□□□□□ -0.35
DDX56-209ENST00000473924 PLEKHA7Q6IQ23 1121 aa12.88□□□□□ -0.35
DDX56-209ENST00000473924 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.88□□□□□ -0.35
DDX56-209ENST00000473924 CHSY1Q86X52 802 aa12.88□□□□□ -0.35
DDX56-209ENST00000473924 FAM217AQ8IXS0 508 aa12.88□□□□□ -0.35
DDX56-209ENST00000473924 TMA16Q96EY4 203 aaKnown RBP12.88□□□□□ -0.35
DDX56-209ENST00000473924 PNKPQ96T60 521 aa12.88□□□□□ -0.35
DDX56-209ENST00000473924 LRFN3Q9BTN0 628 aa12.88□□□□□ -0.35
DDX56-209ENST00000473924 OSBPL6Q9BZF3 934 aa12.88□□□□□ -0.35
DDX56-209ENST00000473924 CALCOCO1Q9P1Z2 691 aa12.88□□□□□ -0.35
DDX56-209ENST00000473924 IMPACTQ9P2X3 320 aa12.88□□□□□ -0.35
DDX56-209ENST00000473924 STOML2Q9UJZ1 356 aa12.88□□□□□ -0.35
DDX56-209ENST00000473924 MTF2Q9Y483 593 aaPredicted RBP12.88□□□□□ -0.35
DDX56-209ENST00000473924 SHISA7A6NL88 538 aa12.87□□□□□ -0.35
DDX56-209ENST00000473924 PI15O43692 258 aa12.87□□□□□ -0.35
DDX56-209ENST00000473924 DRD1P21728 446 aa12.87□□□□□ -0.35
DDX56-209ENST00000473924 OPRD1P41143 372 aa12.87□□□□□ -0.35
DDX56-209ENST00000473924 EIF2DP41214 584 aaKnown RBP12.87□□□□□ -0.35
DDX56-209ENST00000473924 SLC6A11P48066 632 aa12.87□□□□□ -0.35
DDX56-209ENST00000473924 CXCR3P49682 368 aa12.87□□□□□ -0.35
DDX56-209ENST00000473924 ZNF143P52747 638 aaPredicted RBP12.87□□□□□ -0.35
DDX56-209ENST00000473924 ATXN1P54253 815 aaKnown RBP12.87□□□□□ -0.35
DDX56-209ENST00000473924 KDSRQ06136 332 aa12.87□□□□□ -0.35
DDX56-209ENST00000473924 GAB4Q2WGN9 574 aa12.87□□□□□ -0.35
DDX56-209ENST00000473924 FAM133BQ5BKY9 247 aaKnown RBP12.87□□□□□ -0.35
DDX56-209ENST00000473924 TMEM196Q5HYL7 178 aa12.87□□□□□ -0.35
DDX56-209ENST00000473924 PPP1R15BQ5SWA1 713 aa12.87□□□□□ -0.35
DDX56-209ENST00000473924 RAP1GAP2Q684P5 730 aa12.87□□□□□ -0.35
DDX56-209ENST00000473924 NAIF1Q69YI7 327 aaPredicted RBP12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms