RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 PDE1BQ01064 536 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 LACC1Q8IV20 430 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 FIBCD1Q8N539 461 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 PQLC3Q8N755 202 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 RDH11Q8TC12 318 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 SNX27Q96L92 541 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 NT5C1BQ96P26 610 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 INIPQ9NRY2 104 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 COX16Q9P0S2 106 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 UGT2A1Q9Y4X1 527 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 ITGAXP20702 1163 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 SAT1P21673 171 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 ZNF157P51786 506 aaPredicted RBP5.52□□□□□ -1.53
SYNE1-220ENST00000471834 DPYSQ14117 519 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 FASTKD3Q14CZ7 662 aaKnown RBP5.52□□□□□ -1.53
SYNE1-220ENST00000471834 LSM12Q3MHD2 195 aaKnown RBP5.52□□□□□ -1.53
SYNE1-220ENST00000471834 HSP90AA5PQ58FG0 334 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 TTBK2Q6IQ55 1244 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 KIAA1841Q6NSI8 718 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 CPXCR1Q8N123 301 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 NIFKQ9BYG3 293 aaKnown RBP5.52□□□□□ -1.53
SYNE1-220ENST00000471834 BARX2Q9UMQ3 279 aaPredicted RBP5.52□□□□□ -1.53
SYNE1-220ENST00000471834 NPIPB8E9PQR5 432 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 CA12O43570 354 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 CFBP00751 764 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 COL6A2P12110 1019 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 IDUAP35475 653 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 RELAQ04206 551 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 EN1Q05925 392 aaPredicted RBP5.52□□□□□ -1.53
SYNE1-220ENST00000471834 GPR180Q86V85 440 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 FAM178BQ8IXR5 827 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 LINC00116Q8NCU8 138 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 FEZF2Q8TBJ5 459 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 RSAD2Q8WXG1 361 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 RILPQ96NA2 401 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 MXRA8Q9BRK3 442 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 TSSK1BQ9BXA7 367 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 IKZF4Q9H2S9 585 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 ASIC3Q9UHC3 531 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 ARHGAP10A1A4S6 786 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 ZBTB14O43829 449 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 GMNNO75496 209 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 SNRPAP09012 282 aaKnown RBP5.51□□□□□ -1.53
SYNE1-220ENST00000471834 IL1RNP18510 177 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 PEX19P40855 299 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 DGKZQ13574 1117 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 ADGRE1Q14246 886 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 SNRNP35Q16560 246 aaKnown RBP5.51□□□□□ -1.53
SYNE1-220ENST00000471834 OGFOD2Q6N063 350 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 LVRNQ6Q4G3 990 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 CBWD2Q8IUF1 395 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 PLPP6Q8IY26 295 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 RP9Q8TA86 221 aaKnown RBP5.51□□□□□ -1.53
SYNE1-220ENST00000471834 GADD45GIP1Q8TAE8 222 aaPredicted RBP5.51□□□□□ -1.53
SYNE1-220ENST00000471834 TBC1D15Q8TC07 691 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 GANCQ8TET4 914 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 STYXQ8WUJ0 223 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 ASB9Q96DX5 294 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 SCYL1Q96KG9 808 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 SYNDIG1Q9H7V2 258 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 PLGRKTQ9HBL7 147 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 AQP12BA6NM10 295 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 TMEM114B3SHH9 223 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 M0QX08 132 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 PAPSS1O43252 624 aaPredicted RBP5.51□□□□□ -1.53
SYNE1-220ENST00000471834 ATP6V1G1O75348 118 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 SULT1C4O75897 302 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 SERPINE1P05121 402 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 HSD17B1P14061 328 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 PDK3Q15120 406 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 P3H1Q32P28 736 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 NADK2Q4G0N4 442 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 DNAAF5Q86Y56 855 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 RIOX2Q8IUF8 465 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 AQP12AQ8IXF9 295 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 CLEC4DQ8WXI8 215 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 ARNTL2Q8WYA1 636 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 GJA10Q969M2 543 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 ZNF653Q96CK0 615 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 EBNA1BP2Q99848 306 aaKnown RBP5.51□□□□□ -1.53
SYNE1-220ENST00000471834 FAM167BQ9BTA0 163 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 C1QTNF1Q9BXJ1 281 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 NFKBIZQ9BYH8 718 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 CDH22Q9UJ99 828 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 TTC24A2A3L6 582 aaPredicted RBP5.51□□□□□ -1.53
SYNE1-220ENST00000471834 SOCS7O14512 581 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 STAM2O75886 525 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 KRT37O76014 449 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 ACSL3O95573 720 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 CALB1P05937 261 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 SESN3P58005 492 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 IRX4P78413 519 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 JAG1P78504 1218 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 ADARB1P78563 741 aaKnown RBP5.51□□□□□ -1.53
SYNE1-220ENST00000471834 DMWDQ09019 674 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 IKBKEQ14164 716 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 CC2D2BQ6DHV5 1058 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 PRR5LQ6MZQ0 368 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 SCYL2Q6P3W7 929 aa5.51□□□□□ -1.53
SYNE1-220ENST00000471834 ANO5Q75V66 913 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms