RNA–Protein interactions for RNA: ENST00000463370.5

VAPB-203, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 2,393 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-203ENST00000463370 TNFRSF10BO14763 440 aa13.24□□□□□ -0.29
VAPB-203ENST00000463370 DCLK1O15075 740 aa13.24□□□□□ -0.29
VAPB-203ENST00000463370 GCATO75600 419 aa13.24□□□□□ -0.29
VAPB-203ENST00000463370 GRIK1P39086 918 aa13.24□□□□□ -0.29
VAPB-203ENST00000463370 PBX3P40426 434 aa13.24□□□□□ -0.29
VAPB-203ENST00000463370 IFNAR2P48551 515 aa13.24□□□□□ -0.29
VAPB-203ENST00000463370 ZNF534Q76KX8 674 aa13.24□□□□□ -0.29
VAPB-203ENST00000463370 TAOK1Q7L7X3 1001 aa13.24□□□□□ -0.29
VAPB-203ENST00000463370 SPATA2LQ8IUW3 424 aaPredicted RBP13.24□□□□□ -0.29
VAPB-203ENST00000463370 NPWQ8N729 165 aa13.24□□□□□ -0.29
VAPB-203ENST00000463370 ATP11CQ8NB49 1132 aa13.24□□□□□ -0.29
VAPB-203ENST00000463370 DQX1Q8TE96 717 aaKnown RBP13.24□□□□□ -0.29
VAPB-203ENST00000463370 FBF1Q8TES7 1133 aa13.24□□□□□ -0.29
VAPB-203ENST00000463370 TFB1MQ8WVM0 346 aaKnown RBP13.24□□□□□ -0.29
VAPB-203ENST00000463370 HTR3CQ8WXA8 447 aa13.24□□□□□ -0.29
VAPB-203ENST00000463370 NTAN1Q96AB6 310 aa13.24□□□□□ -0.29
VAPB-203ENST00000463370 PGAP3Q96FM1 320 aaPredicted RBP13.24□□□□□ -0.29
VAPB-203ENST00000463370 CCDC77Q9BR77 488 aa13.24□□□□□ -0.29
VAPB-203ENST00000463370 PHACTR1Q9C0D0 580 aa13.24□□□□□ -0.29
VAPB-203ENST00000463370 PLAC1Q9HBJ0 212 aa13.24□□□□□ -0.29
VAPB-203ENST00000463370 INTS9Q9NV88 658 aaKnown RBP13.24□□□□□ -0.29
VAPB-203ENST00000463370 NUDT5Q9UKK9 219 aa13.24□□□□□ -0.29
VAPB-203ENST00000463370 TEX264Q9Y6I9 313 aa13.24□□□□□ -0.29
VAPB-203ENST00000463370 TDRD15B5MCY1 1934 aaKnown RBP13.24□□□□□ -0.29
VAPB-203ENST00000463370 FRMPD3Q5JV73 1810 aa13.24□□□□□ -0.29
VAPB-203ENST00000463370 BRAFP15056 766 aa13.24□□□□□ -0.29
VAPB-203ENST00000463370 ERCC2P18074 760 aa13.24□□□□□ -0.29
VAPB-203ENST00000463370 SCAPQ12770 1279 aa13.24□□□□□ -0.29
VAPB-203ENST00000463370 PKN2Q16513 984 aaKnown RBP13.24□□□□□ -0.29
VAPB-203ENST00000463370 HEATR6Q6AI08 1181 aaKnown RBP13.24□□□□□ -0.29
VAPB-203ENST00000463370 DENND5BQ6ZUT9 1274 aa13.24□□□□□ -0.29
VAPB-203ENST00000463370 ANKRD42Q8N9B4 389 aa13.24□□□□□ -0.29
VAPB-203ENST00000463370 URGCPQ8TCY9 931 aa13.24□□□□□ -0.29
VAPB-203ENST00000463370 SLC9A7Q96T83 725 aa13.24□□□□□ -0.29
VAPB-203ENST00000463370 KLC2Q9H0B6 622 aa13.24□□□□□ -0.29
VAPB-203ENST00000463370 TKTL2Q9H0I9 626 aa13.24□□□□□ -0.29
VAPB-203ENST00000463370 TMEM161AQ9NX61 479 aa13.24□□□□□ -0.29
VAPB-203ENST00000463370 ABI2Q9NYB9 513 aaPredicted RBP13.24□□□□□ -0.29
VAPB-203ENST00000463370 MRPL42Q9Y6G3 142 aaKnown RBP13.24□□□□□ -0.29
VAPB-203ENST00000463370 C5orf60A6NFR6 353 aa13.23□□□□□ -0.29
VAPB-203ENST00000463370 RASA4BC9J798 803 aa13.23□□□□□ -0.29
VAPB-203ENST00000463370 RASA4O43374 803 aa13.23□□□□□ -0.29
VAPB-203ENST00000463370 PQBP1O60828 265 aaKnown RBP13.23□□□□□ -0.29
VAPB-203ENST00000463370 FAM107AO95990 144 aa13.23□□□□□ -0.29
VAPB-203ENST00000463370 CXCR3P49682 368 aa13.23□□□□□ -0.29
VAPB-203ENST00000463370 AP1B1Q10567 949 aa13.23□□□□□ -0.29
VAPB-203ENST00000463370 PLEKHG4Q58EX7 1191 aa13.23□□□□□ -0.29
VAPB-203ENST00000463370 PALM2Q8IXS6 379 aa13.23□□□□□ -0.29
VAPB-203ENST00000463370 TTC9BQ8N6N2 239 aa13.23□□□□□ -0.29
VAPB-203ENST00000463370 CENPTQ96BT3 561 aa13.23□□□□□ -0.29
VAPB-203ENST00000463370 P2RY11Q96G91 374 aa13.23□□□□□ -0.29
VAPB-203ENST00000463370 SCLYQ96I15 445 aa13.23□□□□□ -0.29
VAPB-203ENST00000463370 CASD1Q96PB1 797 aa13.23□□□□□ -0.29
VAPB-203ENST00000463370 PGLYRP2Q96PD5 576 aa13.23□□□□□ -0.29
VAPB-203ENST00000463370 DEFB118Q96PH6 123 aa13.23□□□□□ -0.29
VAPB-203ENST00000463370 PRDM12Q9H4Q4 367 aa13.23□□□□□ -0.29
VAPB-203ENST00000463370 WDCPQ9H6R7 721 aa13.23□□□□□ -0.29
VAPB-203ENST00000463370 KCNK9Q9NPC2 374 aa13.23□□□□□ -0.29
VAPB-203ENST00000463370 MSI1O43347 362 aaKnown RBP13.23□□□□□ -0.29
VAPB-203ENST00000463370 OAZ2O95190 189 aa13.23□□□□□ -0.29
VAPB-203ENST00000463370 MAGEA6P43360 314 aa13.23□□□□□ -0.29
VAPB-203ENST00000463370 PAFAH1B3Q15102 231 aaKnown RBP13.23□□□□□ -0.29
VAPB-203ENST00000463370 PRKD1Q15139 912 aaPredicted RBP13.23□□□□□ -0.29
VAPB-203ENST00000463370 MAPRE1Q15691 268 aaKnown RBP13.23□□□□□ -0.29
VAPB-203ENST00000463370 DDR2Q16832 855 aa13.23□□□□□ -0.29
VAPB-203ENST00000463370 SCD5Q86SK9 330 aa13.23□□□□□ -0.29
VAPB-203ENST00000463370 TADA2BQ86TJ2 420 aa13.23□□□□□ -0.29
VAPB-203ENST00000463370 CEP57Q86XR8 500 aa13.23□□□□□ -0.29
VAPB-203ENST00000463370 TDRPQ86YL5 185 aa13.23□□□□□ -0.29
VAPB-203ENST00000463370 SCN4BQ8IWT1 228 aa13.23□□□□□ -0.29
VAPB-203ENST00000463370 IRGQQ8WZA9 623 aa13.23□□□□□ -0.29
VAPB-203ENST00000463370 ZNF317Q96PQ6 595 aaPredicted RBP13.23□□□□□ -0.29
VAPB-203ENST00000463370 FTHL17Q9BXU8 183 aa13.23□□□□□ -0.29
VAPB-203ENST00000463370 GPR62Q9BZJ7 368 aa13.23□□□□□ -0.29
VAPB-203ENST00000463370 ZCWPW1Q9H0M4 648 aa13.23□□□□□ -0.29
VAPB-203ENST00000463370 NMUR1Q9HB89 426 aa13.23□□□□□ -0.29
VAPB-203ENST00000463370 OSER1Q9NX31 292 aa13.23□□□□□ -0.29
VAPB-203ENST00000463370 A0A1W2PPM1 405 aa13.22□□□□□ -0.29
VAPB-203ENST00000463370 TCRBV9S1A1TA0A576 114 aa13.22□□□□□ -0.29
VAPB-203ENST00000463370 NT5C1B-RDH14C9J2C7 533 aa13.22□□□□□ -0.29
VAPB-203ENST00000463370 TMEM189-UBE2V1I3L0A0 370 aa13.22□□□□□ -0.29
VAPB-203ENST00000463370 SMAPO00193 183 aa13.22□□□□□ -0.29
VAPB-203ENST00000463370 TADA2AO75478 443 aa13.22□□□□□ -0.29
VAPB-203ENST00000463370 ATN1P54259 1190 aaPredicted RBP13.22□□□□□ -0.29
VAPB-203ENST00000463370 YWHAGP61981 247 aaKnown RBP eCLIP13.22□□□□□ -0.29
VAPB-203ENST00000463370 WASHC5Q12768 1159 aa13.22□□□□□ -0.29
VAPB-203ENST00000463370 SF3A3Q12874 501 aaKnown RBP eCLIP13.22□□□□□ -0.29
VAPB-203ENST00000463370 EIF4EBP2Q13542 120 aaPredicted RBP13.22□□□□□ -0.29
VAPB-203ENST00000463370 ANKRD20A2Q5SQ80 823 aa13.22□□□□□ -0.29
VAPB-203ENST00000463370 VARS2Q5ST30 1063 aaKnown RBP13.22□□□□□ -0.29
VAPB-203ENST00000463370 ANKRD20A1Q5TYW2 823 aa13.22□□□□□ -0.29
VAPB-203ENST00000463370 ANKRD20A3Q5VUR7 823 aa13.22□□□□□ -0.29
VAPB-203ENST00000463370 PRPF39Q86UA1 669 aaKnown RBP13.22□□□□□ -0.29
VAPB-203ENST00000463370 TRABD2AQ86V40 505 aa13.22□□□□□ -0.29
VAPB-203ENST00000463370 TMEM173Q86WV6 379 aaPredicted RBP13.22□□□□□ -0.29
VAPB-203ENST00000463370 VPS52Q8N1B4 723 aa13.22□□□□□ -0.29
VAPB-203ENST00000463370 MPP5Q8N3R9 675 aa13.22□□□□□ -0.29
VAPB-203ENST00000463370 CCNYQ8ND76 341 aa13.22□□□□□ -0.29
VAPB-203ENST00000463370 GPR152Q8TDT2 470 aa13.22□□□□□ -0.29
VAPB-203ENST00000463370 DEPDC1BQ8WUY9 529 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms