RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 ST7Q9NRC1 585 aa12.55□□□□□ -0.4
USP40-210ENST00000454354 THAP10Q9P2Z0 257 aaPredicted RBP12.55□□□□□ -0.4
USP40-210ENST00000454354 AJAP1Q9UKB5 411 aaPredicted RBP12.55□□□□□ -0.4
USP40-210ENST00000454354 CLEC4EQ9ULY5 219 aa12.55□□□□□ -0.4
USP40-210ENST00000454354 PCDHGC3Q9UN70 934 aa12.55□□□□□ -0.4
USP40-210ENST00000454354 INVSQ9Y283 1065 aa12.55□□□□□ -0.4
USP40-210ENST00000454354 PCDH15Q96QU1 1955 aa12.54□□□□□ -0.4
USP40-210ENST00000454354 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.54□□□□□ -0.4
USP40-210ENST00000454354 E5RJQ4 531 aa12.54□□□□□ -0.4
USP40-210ENST00000454354 PAPSS1O43252 624 aaPredicted RBP12.54□□□□□ -0.4
USP40-210ENST00000454354 GDF9O60383 454 aa12.54□□□□□ -0.4
USP40-210ENST00000454354 NDUFV2P19404 249 aa12.54□□□□□ -0.4
USP40-210ENST00000454354 WASP42768 502 aa12.54□□□□□ -0.4
USP40-210ENST00000454354 TBX4P57082 545 aa12.54□□□□□ -0.4
USP40-210ENST00000454354 CREB5Q02930 508 aa12.54□□□□□ -0.4
USP40-210ENST00000454354 PDCLQ13371 301 aa12.54□□□□□ -0.4
USP40-210ENST00000454354 E2F5Q15329 346 aa12.54□□□□□ -0.4
USP40-210ENST00000454354 SF3A2Q15428 464 aaKnown RBP12.54□□□□□ -0.4
USP40-210ENST00000454354 CCDC6Q16204 474 aa12.54□□□□□ -0.4
USP40-210ENST00000454354 ARHGAP44Q17R89 818 aa12.54□□□□□ -0.4
USP40-210ENST00000454354 AASDHQ4L235 1098 aaPredicted RBP12.54□□□□□ -0.4
USP40-210ENST00000454354 FAM133BQ5BKY9 247 aaKnown RBP12.54□□□□□ -0.4
USP40-210ENST00000454354 KIAA1211LQ6NV74 962 aa12.54□□□□□ -0.4
USP40-210ENST00000454354 RBM43Q6ZSC3 357 aaKnown RBP12.54□□□□□ -0.4
USP40-210ENST00000454354 UNC45BQ8IWX7 931 aa12.54□□□□□ -0.4
USP40-210ENST00000454354 SCUBE3Q8IX30 993 aa12.54□□□□□ -0.4
USP40-210ENST00000454354 DQX1Q8TE96 717 aaKnown RBP12.54□□□□□ -0.4
USP40-210ENST00000454354 UCMAQ8WVF2 138 aa12.54□□□□□ -0.4
USP40-210ENST00000454354 RLN3Q8WXF3 142 aa12.54□□□□□ -0.4
USP40-210ENST00000454354 SLC39A13Q96H72 371 aa12.54□□□□□ -0.4
USP40-210ENST00000454354 FCRL2Q96LA5 508 aaPredicted RBP12.54□□□□□ -0.4
USP40-210ENST00000454354 SERPINB11Q96P15 392 aa12.54□□□□□ -0.4
USP40-210ENST00000454354 TUBGCP2Q9BSJ2 902 aa12.54□□□□□ -0.4
USP40-210ENST00000454354 TRIM62Q9BVG3 475 aa12.54□□□□□ -0.4
USP40-210ENST00000454354 CACNA2D2Q9NY47 1150 aa12.54□□□□□ -0.4
USP40-210ENST00000454354 CALCOCO1Q9P1Z2 691 aa12.54□□□□□ -0.4
USP40-210ENST00000454354 MBD1Q9UIS9 605 aaPredicted RBP12.54□□□□□ -0.4
USP40-210ENST00000454354 TLR6Q9Y2C9 796 aa12.54□□□□□ -0.4
USP40-210ENST00000454354 ASCC3Q8N3C0 2202 aaKnown RBP12.53□□□□□ -0.4
USP40-210ENST00000454354 DOCK4Q8N1I0 1966 aa12.53□□□□□ -0.4
USP40-210ENST00000454354 IRAK2O43187 625 aa12.53□□□□□ -0.4
USP40-210ENST00000454354 ACSL4O60488 711 aa12.53□□□□□ -0.4
USP40-210ENST00000454354 IGLV3-25P01717 112 aa12.53□□□□□ -0.4
USP40-210ENST00000454354 NCAM1P13591 858 aa12.53□□□□□ -0.4
USP40-210ENST00000454354 EEF1GP26641 437 aaKnown RBP12.53□□□□□ -0.4
USP40-210ENST00000454354 VWA3BQ502W6 1294 aa12.53□□□□□ -0.4
USP40-210ENST00000454354 MPP7Q5T2T1 576 aa12.53□□□□□ -0.4
USP40-210ENST00000454354 PIK3R6Q5UE93 754 aa12.53□□□□□ -0.4
USP40-210ENST00000454354 KIAA0907Q7Z7F0 614 aaPredicted RBP12.53□□□□□ -0.4
USP40-210ENST00000454354 PGBD3Q8N328 593 aa12.53□□□□□ -0.4
USP40-210ENST00000454354 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.53□□□□□ -0.4
USP40-210ENST00000454354 C12orf50Q8NA57 414 aaPredicted RBP12.53□□□□□ -0.4
USP40-210ENST00000454354 WFIKKN2Q8TEU8 576 aa12.53□□□□□ -0.4
USP40-210ENST00000454354 FAM149B1Q96BN6 582 aa12.53□□□□□ -0.4
USP40-210ENST00000454354 POPDC2Q9HBU9 364 aa12.53□□□□□ -0.4
USP40-210ENST00000454354 ELOVL2Q9NXB9 296 aa12.53□□□□□ -0.4
USP40-210ENST00000454354 RAD54BQ9Y620 910 aa12.53□□□□□ -0.4
USP40-210ENST00000454354 STON1Q9Y6Q2 735 aa12.53□□□□□ -0.4
USP40-210ENST00000454354 TP53BP1Q12888 1972 aaPredicted RBP12.52□□□□□ -0.4
USP40-210ENST00000454354 CHD8Q9HCK8 2581 aa12.52□□□□□ -0.4
USP40-210ENST00000454354 MED19A0JLT2 244 aaPredicted RBP12.52□□□□□ -0.41
USP40-210ENST00000454354 KCNJ18B7U540 433 aa12.52□□□□□ -0.41
USP40-210ENST00000454354 WASH3PC4AMC7 463 aa12.52□□□□□ -0.41
USP40-210ENST00000454354 TIMM44O43615 452 aa12.52□□□□□ -0.41
USP40-210ENST00000454354 TSPAN3O60637 253 aa12.52□□□□□ -0.41
USP40-210ENST00000454354 ZNF217O75362 1048 aa12.52□□□□□ -0.41
USP40-210ENST00000454354 CAVIN2O95810 425 aa12.52□□□□□ -0.41
USP40-210ENST00000454354 HLA-FP30511 346 aa12.52□□□□□ -0.41
USP40-210ENST00000454354 SLC6A4P31645 630 aa12.52□□□□□ -0.41
USP40-210ENST00000454354 CLCN1P35523 988 aa12.52□□□□□ -0.41
USP40-210ENST00000454354 USP8P40818 1118 aa12.52□□□□□ -0.41
USP40-210ENST00000454354 DPP6P42658 865 aa12.52□□□□□ -0.41
USP40-210ENST00000454354 IL12RB1P42701 662 aa12.52□□□□□ -0.41
USP40-210ENST00000454354 SLC11A2P49281 568 aa12.52□□□□□ -0.41
USP40-210ENST00000454354 SGSHP51688 502 aa12.52□□□□□ -0.41
USP40-210ENST00000454354 PTK2Q05397 1052 aa12.52□□□□□ -0.41
USP40-210ENST00000454354 EIF4EBP2Q13542 120 aaPredicted RBP12.52□□□□□ -0.41
USP40-210ENST00000454354 KCNJ12Q14500 433 aa12.52□□□□□ -0.41
USP40-210ENST00000454354 ZNF234Q14588 700 aa12.52□□□□□ -0.41
USP40-210ENST00000454354 STARD3Q14849 445 aa12.52□□□□□ -0.41
USP40-210ENST00000454354 PEAR1Q5VY43 1037 aaPredicted RBP12.52□□□□□ -0.41
USP40-210ENST00000454354 TMEM215Q68D42 235 aa12.52□□□□□ -0.41
USP40-210ENST00000454354 NADSYN1Q6IA69 706 aa12.52□□□□□ -0.41
USP40-210ENST00000454354 SLC36A4Q6YBV0 504 aa12.52□□□□□ -0.41
USP40-210ENST00000454354 LPCAT2Q7L5N7 544 aa12.52□□□□□ -0.41
USP40-210ENST00000454354 CYP2U1Q7Z449 544 aa12.52□□□□□ -0.41
USP40-210ENST00000454354 METTL3Q86U44 580 aaKnown RBP12.52□□□□□ -0.41
USP40-210ENST00000454354 TAC4Q86UU9 113 aa12.52□□□□□ -0.41
USP40-210ENST00000454354 FAM71AQ8IYT1 594 aa12.52□□□□□ -0.41
USP40-210ENST00000454354 WDTC1Q8N5D0 677 aa12.52□□□□□ -0.41
USP40-210ENST00000454354 FRMD1Q8N878 549 aa12.52□□□□□ -0.41
USP40-210ENST00000454354 GPT2Q8TD30 523 aa12.52□□□□□ -0.41
USP40-210ENST00000454354 TMA16Q96EY4 203 aaKnown RBP12.52□□□□□ -0.41
USP40-210ENST00000454354 MRGPRX1Q96LB2 322 aa12.52□□□□□ -0.41
USP40-210ENST00000454354 GBP4Q96PP9 640 aa12.52□□□□□ -0.41
USP40-210ENST00000454354 CPXM1Q96SM3 734 aa12.52□□□□□ -0.41
USP40-210ENST00000454354 LHX5Q9H2C1 402 aa12.52□□□□□ -0.41
USP40-210ENST00000454354 SMOC1Q9H4F8 434 aa12.52□□□□□ -0.41
USP40-210ENST00000454354 RXFP3Q9NSD7 469 aa12.52□□□□□ -0.41
USP40-210ENST00000454354 SAMSN1Q9NSI8 373 aaKnown RBP12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms