RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 GRAP2O75791 330 aa13.25□□□□□ -0.29
PRPF40A-203ENST00000448428 GFPT2O94808 682 aa13.25□□□□□ -0.29
PRPF40A-203ENST00000448428 TRUB2O95900 331 aaKnown RBP13.25□□□□□ -0.29
PRPF40A-203ENST00000448428 IGLV3-25P01717 112 aa13.25□□□□□ -0.29
PRPF40A-203ENST00000448428 GLI1P08151 1106 aa13.25□□□□□ -0.29
PRPF40A-203ENST00000448428 MMEP08473 750 aa13.25□□□□□ -0.29
PRPF40A-203ENST00000448428 HOXD9P28356 352 aaPredicted RBP13.25□□□□□ -0.29
PRPF40A-203ENST00000448428 NTSR1P30989 418 aa13.25□□□□□ -0.29
PRPF40A-203ENST00000448428 WASP42768 502 aa13.25□□□□□ -0.29
PRPF40A-203ENST00000448428 SLC11A2P49281 568 aa13.25□□□□□ -0.29
PRPF40A-203ENST00000448428 SGSHP51688 502 aa13.25□□□□□ -0.29
PRPF40A-203ENST00000448428 JAM2P57087 298 aa13.25□□□□□ -0.29
PRPF40A-203ENST00000448428 SNX16P57768 344 aa13.25□□□□□ -0.29
PRPF40A-203ENST00000448428 SLC6A3Q01959 620 aa13.25□□□□□ -0.29
PRPF40A-203ENST00000448428 NNTQ13423 1086 aa13.25□□□□□ -0.29
PRPF40A-203ENST00000448428 GEN1Q17RS7 908 aa13.25□□□□□ -0.29
PRPF40A-203ENST00000448428 KLHL40Q2TBA0 621 aa13.25□□□□□ -0.29
PRPF40A-203ENST00000448428 PTPN20Q4JDL3 420 aa13.25□□□□□ -0.29
PRPF40A-203ENST00000448428 DCAF6Q58WW2 860 aa13.25□□□□□ -0.29
PRPF40A-203ENST00000448428 FAM133BQ5BKY9 247 aaKnown RBP13.25□□□□□ -0.29
PRPF40A-203ENST00000448428 LAIR1Q6GTX8 287 aa13.25□□□□□ -0.29
PRPF40A-203ENST00000448428 NADSYN1Q6IA69 706 aa13.25□□□□□ -0.29
PRPF40A-203ENST00000448428 ANO7Q6IWH7 933 aa13.25□□□□□ -0.29
PRPF40A-203ENST00000448428 RFWD3Q6PCD5 774 aa13.25□□□□□ -0.29
PRPF40A-203ENST00000448428 TAC4Q86UU9 113 aa13.25□□□□□ -0.29
PRPF40A-203ENST00000448428 KBTBD6Q86V97 674 aa13.25□□□□□ -0.29
PRPF40A-203ENST00000448428 RASSF3Q86WH2 238 aa13.25□□□□□ -0.29
PRPF40A-203ENST00000448428 DEFB106AQ8N104 65 aa13.25□□□□□ -0.29
PRPF40A-203ENST00000448428 FAM160A2Q8N612 972 aaPredicted RBP13.25□□□□□ -0.29
PRPF40A-203ENST00000448428 TMEM35BQ8NCS4 154 aa13.25□□□□□ -0.29
PRPF40A-203ENST00000448428 PCMTD1Q96MG8 357 aaPredicted RBP13.25□□□□□ -0.29
PRPF40A-203ENST00000448428 ERGIC2Q96RQ1 377 aa13.25□□□□□ -0.29
PRPF40A-203ENST00000448428 FUCA2Q9BTY2 467 aa13.25□□□□□ -0.29
PRPF40A-203ENST00000448428 POLMQ9NP87 494 aaPredicted RBP13.25□□□□□ -0.29
PRPF40A-203ENST00000448428 ASNSD1Q9NWL6 643 aa13.25□□□□□ -0.29
PRPF40A-203ENST00000448428 INVSQ9Y283 1065 aa13.25□□□□□ -0.29
PRPF40A-203ENST00000448428 CEP83Q9Y592 693 aa13.25□□□□□ -0.29
PRPF40A-203ENST00000448428 FAM186AA6NE01 2351 aa13.25□□□□□ -0.29
PRPF40A-203ENST00000448428 PTPRZ1P23471 2315 aaPredicted RBP13.25□□□□□ -0.29
PRPF40A-203ENST00000448428 FAM170AA1A519 330 aa13.24□□□□□ -0.29
PRPF40A-203ENST00000448428 SMTNL1A8MU46 457 aa13.24□□□□□ -0.29
PRPF40A-203ENST00000448428 DCLK1O15075 740 aa13.24□□□□□ -0.29
PRPF40A-203ENST00000448428 SOX5P35711 763 aa13.24□□□□□ -0.29
PRPF40A-203ENST00000448428 GABRB2P47870 512 aa13.24□□□□□ -0.29
PRPF40A-203ENST00000448428 ZNF165P49910 485 aa13.24□□□□□ -0.29
PRPF40A-203ENST00000448428 ZNF445P59923 1031 aa13.24□□□□□ -0.29
PRPF40A-203ENST00000448428 EIF4EBP2Q13542 120 aaPredicted RBP13.24□□□□□ -0.29
PRPF40A-203ENST00000448428 ZC3H12AQ5D1E8 599 aaKnown RBP13.24□□□□□ -0.29
PRPF40A-203ENST00000448428 PIK3R6Q5UE93 754 aa13.24□□□□□ -0.29
PRPF40A-203ENST00000448428 SDE2Q6IQ49 451 aa13.24□□□□□ -0.29
PRPF40A-203ENST00000448428 OLFML1Q6UWY5 402 aa13.24□□□□□ -0.29
PRPF40A-203ENST00000448428 TRMT11Q7Z4G4 463 aaKnown RBP13.24□□□□□ -0.29
PRPF40A-203ENST00000448428 KIAA2013Q8IYS2 634 aa13.24□□□□□ -0.29
PRPF40A-203ENST00000448428 CHPFQ8IZ52 775 aa13.24□□□□□ -0.29
PRPF40A-203ENST00000448428 MDGA1Q8NFP4 955 aa13.24□□□□□ -0.29
PRPF40A-203ENST00000448428 NEK11Q8NG66 645 aa13.24□□□□□ -0.29
PRPF40A-203ENST00000448428 EPS8L1Q8TE68 723 aa13.24□□□□□ -0.29
PRPF40A-203ENST00000448428 SLC20A1Q8WUM9 679 aa13.24□□□□□ -0.29
PRPF40A-203ENST00000448428 SLC2A13Q96QE2 648 aa13.24□□□□□ -0.29
PRPF40A-203ENST00000448428 TPSD1Q9BZJ3 242 aa13.24□□□□□ -0.29
PRPF40A-203ENST00000448428 SYNCQ9H7C4 482 aa13.24□□□□□ -0.29
PRPF40A-203ENST00000448428 NOCTQ9UK39 431 aaKnown RBP13.24□□□□□ -0.29
PRPF40A-203ENST00000448428 GMEB2Q9UKD1 530 aa13.24□□□□□ -0.29
PRPF40A-203ENST00000448428 RIF1Q5UIP0 2472 aaKnown RBP13.24□□□□□ -0.29
PRPF40A-203ENST00000448428 ABCA7Q8IZY2 2146 aa13.24□□□□□ -0.29
PRPF40A-203ENST00000448428 THADAQ6YHU6 1953 aa13.23□□□□□ -0.29
PRPF40A-203ENST00000448428 OTOGLQ3ZCN5 2332 aa13.23□□□□□ -0.29
PRPF40A-203ENST00000448428 A0A1W2PQF6 199 aa13.23□□□□□ -0.29
PRPF40A-203ENST00000448428 WASH3PC4AMC7 463 aa13.23□□□□□ -0.29
PRPF40A-203ENST00000448428 IRAK2O43187 625 aa13.23□□□□□ -0.29
PRPF40A-203ENST00000448428 HSF2BPO75031 334 aa13.23□□□□□ -0.29
PRPF40A-203ENST00000448428 ALDH1A2O94788 518 aa13.23□□□□□ -0.29
PRPF40A-203ENST00000448428 RETP07949 1114 aa13.23□□□□□ -0.29
PRPF40A-203ENST00000448428 HOXB2P14652 356 aa13.23□□□□□ -0.29
PRPF40A-203ENST00000448428 CHRNB2P17787 502 aa13.23□□□□□ -0.29
PRPF40A-203ENST00000448428 TGM1P22735 817 aa13.23□□□□□ -0.29
PRPF40A-203ENST00000448428 CDK17Q00537 523 aa13.23□□□□□ -0.29
PRPF40A-203ENST00000448428 TMEM215Q68D42 235 aa13.23□□□□□ -0.29
PRPF40A-203ENST00000448428 SLC26A9Q7LBE3 791 aa13.23□□□□□ -0.29
PRPF40A-203ENST00000448428 CACNA2D4Q7Z3S7 1137 aa13.23□□□□□ -0.29
PRPF40A-203ENST00000448428 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.23□□□□□ -0.29
PRPF40A-203ENST00000448428 ERICH1Q86X53 443 aa13.23□□□□□ -0.29
PRPF40A-203ENST00000448428 ZNF397Q8NF99 534 aaPredicted RBP13.23□□□□□ -0.29
PRPF40A-203ENST00000448428 IPO4Q8TEX9 1081 aaKnown RBP13.23□□□□□ -0.29
PRPF40A-203ENST00000448428 HMGB4Q8WW32 186 aa13.23□□□□□ -0.29
PRPF40A-203ENST00000448428 CPA5Q8WXQ8 436 aa13.23□□□□□ -0.29
PRPF40A-203ENST00000448428 C18orf8Q96DM3 657 aa13.23□□□□□ -0.29
PRPF40A-203ENST00000448428 MYEOVQ96EZ4 313 aa13.23□□□□□ -0.29
PRPF40A-203ENST00000448428 ZC3H10Q96K80 434 aaKnown RBP13.23□□□□□ -0.29
PRPF40A-203ENST00000448428 SPAG5Q96R06 1193 aa13.23□□□□□ -0.29
PRPF40A-203ENST00000448428 DDX50Q9BQ39 737 aaKnown RBP13.23□□□□□ -0.29
PRPF40A-203ENST00000448428 IRX2Q9BZI1 471 aaPredicted RBP13.23□□□□□ -0.29
PRPF40A-203ENST00000448428 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.23□□□□□ -0.29
PRPF40A-203ENST00000448428 ELOVL2Q9NXB9 296 aa13.23□□□□□ -0.29
PRPF40A-203ENST00000448428 CACNA2D2Q9NY47 1150 aa13.23□□□□□ -0.29
PRPF40A-203ENST00000448428 XPO7Q9UIA9 1087 aaKnown RBP13.23□□□□□ -0.29
PRPF40A-203ENST00000448428 DAAM1Q9Y4D1 1078 aa13.23□□□□□ -0.29
PRPF40A-203ENST00000448428 DMDP11532 3685 aa13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 CEP192Q8TEP8 1941 aa13.22□□□□□ -0.29
PRPF40A-203ENST00000448428 TCRBV21S2A2A0A5A6 115 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms