RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 PTPN7P35236 360 aa12.64□□□□□ -0.39
TCOF1-205ENST00000439160 SPDYAQ5MJ70 313 aa12.64□□□□□ -0.39
TCOF1-205ENST00000439160 C9orf57Q5W0N0 161 aa12.64□□□□□ -0.39
TCOF1-205ENST00000439160 LONP2Q86WA8 852 aa12.64□□□□□ -0.39
TCOF1-205ENST00000439160 MFN1Q8IWA4 741 aa12.64□□□□□ -0.39
TCOF1-205ENST00000439160 RNF157Q96PX1 679 aa12.64□□□□□ -0.39
TCOF1-205ENST00000439160 HEY2Q9UBP5 337 aa12.64□□□□□ -0.39
TCOF1-205ENST00000439160 PCDHA2Q9Y5H9 948 aa12.64□□□□□ -0.39
TCOF1-205ENST00000439160 FSCN2O14926 492 aa12.64□□□□□ -0.39
TCOF1-205ENST00000439160 MSCO60682 206 aa12.64□□□□□ -0.39
TCOF1-205ENST00000439160 SKAP2O75563 359 aaPredicted RBP12.64□□□□□ -0.39
TCOF1-205ENST00000439160 DGKIO75912 1065 aa12.64□□□□□ -0.39
TCOF1-205ENST00000439160 SHBGP04278 402 aa12.64□□□□□ -0.39
TCOF1-205ENST00000439160 RHOAP61586 193 aa12.64□□□□□ -0.39
TCOF1-205ENST00000439160 ARHGAP15Q53QZ3 475 aa12.64□□□□□ -0.39
TCOF1-205ENST00000439160 IFNEQ86WN2 208 aa12.64□□□□□ -0.39
TCOF1-205ENST00000439160 ZCCHC9Q8N567 271 aaKnown RBP12.64□□□□□ -0.39
TCOF1-205ENST00000439160 BRI3BPQ8WY22 251 aa12.64□□□□□ -0.39
TCOF1-205ENST00000439160 LRRC19Q9H756 370 aa12.64□□□□□ -0.39
TCOF1-205ENST00000439160 ERVK-5Q9HDB9 667 aa12.64□□□□□ -0.39
TCOF1-205ENST00000439160 CASS4Q9NQ75 786 aa12.64□□□□□ -0.39
TCOF1-205ENST00000439160 ZNF197O14709 1029 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 TSPAN1O60635 241 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 ARIH2O95376 493 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 RPL22P35268 128 aaKnown RBP12.63□□□□□ -0.39
TCOF1-205ENST00000439160 SOX11P35716 441 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 RGS4P49798 205 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 RENBPP51606 427 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 JAM2P57087 298 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 NLRP9Q7RTR0 991 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 PRPF39Q86UA1 669 aaKnown RBP12.63□□□□□ -0.39
TCOF1-205ENST00000439160 MTBPQ96DY7 904 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 MAGEB18Q96M61 343 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 MARCH2Q9P0N8 246 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 SCOCQ9UIL1 159 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 RUVBL2Q9Y230 463 aaKnown RBP12.63□□□□□ -0.39
TCOF1-205ENST00000439160 C5P01031 1676 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.63□□□□□ -0.39
TCOF1-205ENST00000439160 BGNP21810 368 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 EEF1B2P24534 225 aaKnown RBP12.63□□□□□ -0.39
TCOF1-205ENST00000439160 TARSP26639 723 aaKnown RBP12.63□□□□□ -0.39
TCOF1-205ENST00000439160 CRADDP78560 199 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 CDH17Q12864 832 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 PDCD2Q16342 344 aaPredicted RBP12.63□□□□□ -0.39
TCOF1-205ENST00000439160 SYTL3Q4VX76 610 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 LRRC8EQ6NSJ5 796 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 MYLPFQ96A32 169 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 MRPL9Q9BYD2 267 aaKnown RBP12.63□□□□□ -0.39
TCOF1-205ENST00000439160 NDE1Q9NXR1 346 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 AJAP1Q9UKB5 411 aaPredicted RBP12.63□□□□□ -0.39
TCOF1-205ENST00000439160 PCDHB12Q9Y5F1 795 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 ORC6Q9Y5N6 252 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 GOLGA4Q13439 2230 aaKnown RBP12.63□□□□□ -0.39
TCOF1-205ENST00000439160 hCG_1818297A0A087WSY0 165 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 NT5C1B-RDH14C9J2C7 533 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 ANGPT2O15123 496 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 SRP72O76094 671 aaKnown RBP12.63□□□□□ -0.39
TCOF1-205ENST00000439160 ERBB2P04626 1255 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 MAP4P27816 1152 aaKnown RBP12.63□□□□□ -0.39
TCOF1-205ENST00000439160 SERPINB8P50452 374 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 AP2B1P63010 937 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 MBTD1Q05BQ5 628 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 NOMO2Q5JPE7 1267 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 BBS12Q6ZW61 710 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 CNPY4Q8N129 248 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 TCP10LQ8TDR4 215 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 TEPSINQ96N21 525 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 APOBEC3GQ9HC16 384 aaKnown RBP12.63□□□□□ -0.39
TCOF1-205ENST00000439160 CDH9Q9ULB4 789 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 DOT1LQ8TEK3 1739 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 RNF103-CHMP3A0A140T963 221 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 TTLL13PA6NNM8 815 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 E2F6O75461 281 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 SERPINF2P08697 491 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 GOT1P17174 413 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 ITGA7Q13683 1181 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 SGO1Q5FBB7 561 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 DUPD1Q68J44 220 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 UNC45BQ8IWX7 931 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 RNF217Q8TC41 542 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 NRDE2Q9H7Z3 1164 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 ATP13A1Q9HD20 1204 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 DCDC2Q9UHG0 476 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 ACOT9Q9Y305 439 aa12.63□□□□□ -0.39
TCOF1-205ENST00000439160 CFAP99D6REC4 459 aa12.62□□□□□ -0.39
TCOF1-205ENST00000439160 IGF2BP3O00425 579 aaKnown RBP eCLIP12.62□□□□□ -0.39
TCOF1-205ENST00000439160 VAPBO95292 243 aa12.62□□□□□ -0.39
TCOF1-205ENST00000439160 LCA5LO95447 670 aa12.62□□□□□ -0.39
TCOF1-205ENST00000439160 ASGR1P07306 291 aa12.62□□□□□ -0.39
TCOF1-205ENST00000439160 PDHA1P08559 390 aa12.62□□□□□ -0.39
TCOF1-205ENST00000439160 FLT3P36888 993 aa12.62□□□□□ -0.39
TCOF1-205ENST00000439160 MAPRE2Q15555 327 aa12.62□□□□□ -0.39
TCOF1-205ENST00000439160 AGAP9Q5VTM2 703 aa12.62□□□□□ -0.39
TCOF1-205ENST00000439160 LGI2Q8N0V4 545 aa12.62□□□□□ -0.39
TCOF1-205ENST00000439160 USP6NLQ92738 828 aa12.62□□□□□ -0.39
TCOF1-205ENST00000439160 ILKAPQ9H0C8 392 aaPredicted RBP12.62□□□□□ -0.39
TCOF1-205ENST00000439160 PRDM12Q9H4Q4 367 aa12.62□□□□□ -0.39
TCOF1-205ENST00000439160 CD248Q9HCU0 757 aa12.62□□□□□ -0.39
TCOF1-205ENST00000439160 SIX2Q9NPC8 291 aa12.62□□□□□ -0.39
TCOF1-205ENST00000439160 COL1A2P08123 1366 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms