RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 MYO15BQ96JP2 1530 aa4.42□□□□□ -1.7
HMGB1-204ENST00000399489 A0A0A6YYJ9 748 aa4.42□□□□□ -1.7
HMGB1-204ENST00000399489 DNPH1O43598 174 aa4.42□□□□□ -1.7
HMGB1-204ENST00000399489 TBC1D4O60343 1298 aa4.42□□□□□ -1.7
HMGB1-204ENST00000399489 OPHN1O60890 802 aa4.42□□□□□ -1.7
HMGB1-204ENST00000399489 CSPG5O95196 566 aa4.42□□□□□ -1.7
HMGB1-204ENST00000399489 TXNP10599 105 aaKnown RBP4.42□□□□□ -1.7
HMGB1-204ENST00000399489 GYPEP15421 78 aa4.42□□□□□ -1.7
HMGB1-204ENST00000399489 KLRC1P26715 233 aa4.42□□□□□ -1.7
HMGB1-204ENST00000399489 EPHA8P29322 1005 aaPredicted RBP4.42□□□□□ -1.7
HMGB1-204ENST00000399489 TLX1P31314 330 aaPredicted RBP4.42□□□□□ -1.7
HMGB1-204ENST00000399489 CIITAP33076 1130 aa4.42□□□□□ -1.7
HMGB1-204ENST00000399489 KRT2P35908 639 aa4.42□□□□□ -1.7
HMGB1-204ENST00000399489 GGT5P36269 586 aa4.42□□□□□ -1.7
HMGB1-204ENST00000399489 TNNT2P45379 298 aaPredicted RBP4.42□□□□□ -1.7
HMGB1-204ENST00000399489 RCAN1P53805 252 aa4.42□□□□□ -1.7
HMGB1-204ENST00000399489 RPS3AP61247 264 aaKnown RBP4.42□□□□□ -1.7
HMGB1-204ENST00000399489 PSMC6P62333 389 aa4.42□□□□□ -1.7
HMGB1-204ENST00000399489 EXOSC9Q06265 439 aaKnown RBP4.42□□□□□ -1.7
HMGB1-204ENST00000399489 SLC14A1Q13336 389 aa4.42□□□□□ -1.7
HMGB1-204ENST00000399489 SEC23BQ15437 767 aa4.42□□□□□ -1.7
HMGB1-204ENST00000399489 WSCD2Q2TBF2 565 aa4.42□□□□□ -1.7
HMGB1-204ENST00000399489 SLC44A4Q53GD3 710 aa4.42□□□□□ -1.7
HMGB1-204ENST00000399489 CCDC178Q5BJE1 867 aa4.42□□□□□ -1.7
HMGB1-204ENST00000399489 TCP11X2Q5H9J9 407 aa4.42□□□□□ -1.7
HMGB1-204ENST00000399489 RAP1GAP2Q684P5 730 aa4.42□□□□□ -1.7
HMGB1-204ENST00000399489 DPY19L2P1Q6NXN4 242 aa4.42□□□□□ -1.7
HMGB1-204ENST00000399489 INO80CQ6PI98 192 aaPredicted RBP4.42□□□□□ -1.7
HMGB1-204ENST00000399489 KCNV1Q6PIU1 500 aa4.42□□□□□ -1.7
HMGB1-204ENST00000399489 SLC2A7Q6PXP3 512 aa4.42□□□□□ -1.7
HMGB1-204ENST00000399489 USP17L6PQ6QN14 398 aa4.42□□□□□ -1.7
HMGB1-204ENST00000399489 IKBIPQ70UQ0 350 aa4.42□□□□□ -1.7
HMGB1-204ENST00000399489 RAB11FIP2Q7L804 512 aa4.42□□□□□ -1.7
HMGB1-204ENST00000399489 SCML4Q8N228 414 aa4.42□□□□□ -1.7
HMGB1-204ENST00000399489 OR56A3Q8NH54 315 aa4.42□□□□□ -1.7
HMGB1-204ENST00000399489 METTL6Q8TCB7 284 aa4.42□□□□□ -1.7
HMGB1-204ENST00000399489 CPT1CQ8TCG5 803 aa4.42□□□□□ -1.7
HMGB1-204ENST00000399489 RSC1A1Q92681 617 aa4.42□□□□□ -1.7
HMGB1-204ENST00000399489 APOPT1Q96IL0 206 aa4.42□□□□□ -1.7
HMGB1-204ENST00000399489 AGAP2Q99490 1192 aa4.42□□□□□ -1.7
HMGB1-204ENST00000399489 PITHD1Q9GZP4 211 aaPredicted RBP4.42□□□□□ -1.7
HMGB1-204ENST00000399489 PCDHAC1Q9H158 963 aa4.42□□□□□ -1.7
HMGB1-204ENST00000399489 PDE7BQ9NP56 450 aa4.42□□□□□ -1.7
HMGB1-204ENST00000399489 HEYLQ9NQ87 328 aaPredicted RBP4.42□□□□□ -1.7
HMGB1-204ENST00000399489 ADPRHL2Q9NX46 363 aa4.42□□□□□ -1.7
HMGB1-204ENST00000399489 ZDHHC7Q9NXF8 308 aa4.42□□□□□ -1.7
HMGB1-204ENST00000399489 CAMK2AQ9UQM7 478 aa4.42□□□□□ -1.7
HMGB1-204ENST00000399489 DERAQ9Y315 318 aa4.42□□□□□ -1.7
HMGB1-204ENST00000399489 PAXBP1Q9Y5B6 917 aa4.42□□□□□ -1.7
HMGB1-204ENST00000399489 LYVE1Q9Y5Y7 322 aa4.42□□□□□ -1.7
HMGB1-204ENST00000399489 EPN1Q9Y6I3 576 aaPredicted RBP4.42□□□□□ -1.7
HMGB1-204ENST00000399489 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.42□□□□□ -1.7
HMGB1-204ENST00000399489 LMTK3Q96Q04 1460 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 MBD3L4A6NDZ8 208 aaPredicted RBP4.41□□□□□ -1.7
HMGB1-204ENST00000399489 MBD3L3A6NE82 208 aaPredicted RBP4.41□□□□□ -1.7
HMGB1-204ENST00000399489 A8MXE2 369 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 STX16-NPEPL1H3BU86 382 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 STX16O14662 325 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 AKR1B10O60218 316 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 GCP02774 474 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 PCP11498 1178 aaKnown RBP4.41□□□□□ -1.7
HMGB1-204ENST00000399489 CKBP12277 381 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 PECAM1P16284 738 aaPredicted RBP4.41□□□□□ -1.7
HMGB1-204ENST00000399489 IL1R2P27930 398 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 RABGGTBP53611 331 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 POLR2FP61218 127 aaKnown RBP4.41□□□□□ -1.7
HMGB1-204ENST00000399489 CTBP1Q13363 440 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 DCTN2Q13561 401 aaKnown RBP4.41□□□□□ -1.7
HMGB1-204ENST00000399489 RAB32Q13637 225 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 SLC5A9Q2M3M2 681 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 NAA35Q5VZE5 725 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 IYDQ6PHW0 289 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 CRTC1Q6UUV9 634 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 HTR3DQ70Z44 454 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 RSPH3Q86UC2 560 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 GLB1L2Q8IW92 636 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 CCDC28AQ8IWP9 274 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 CCAR2Q8N163 923 aaKnown RBP4.41□□□□□ -1.7
HMGB1-204ENST00000399489 ZNF540Q8NDQ6 660 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 GPR150Q8NGU9 434 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 NFKBIDQ8NI38 313 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 PROKR1Q8TCW9 393 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 GRK7Q8WTQ7 553 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 DEPDC1BQ8WUY9 529 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 ZNF606Q8WXB4 792 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 EXOC4Q96A65 974 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 VPS33AQ96AX1 596 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 TMX3Q96JJ7 454 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 CABS1Q96KC9 395 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 CFAP53Q96M91 514 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 TMEM237Q96Q45 408 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 HAPLN2Q9GZV7 340 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 CHODLQ9H9P2 273 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 HCFC1R1Q9NWW0 138 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 RABL2AQ9UBK7 228 aaPredicted RBP4.41□□□□□ -1.7
HMGB1-204ENST00000399489 MOSPD1Q9UJG1 213 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 MID2Q9UJV3 735 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 FZD1Q9UP38 647 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 E7EVH7 732 aa4.41□□□□□ -1.7
HMGB1-204ENST00000399489 NDC80O14777 642 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms