RNA–Protein interactions for RNA: ENST00000397606.7

PTPRD-204, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 5,038 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-204ENST00000397606 TIMP1P01033 207 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 PBX3P40426 434 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 MFN1Q8IWA4 741 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 SLC25A41Q8N5S1 370 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 HTR3CQ8WXA8 447 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 ARNTL2Q8WYA1 636 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 PIK3R5Q8WYR1 880 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 SMG7Q92540 1137 aaKnown RBP8.53□□□□□ -1.04
PTPRD-204ENST00000397606 DCUN1D1Q96GG9 259 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 RAD9AQ99638 391 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 NSMCE4AQ9NXX6 385 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 MOSPD1Q9UJG1 213 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 ASB3Q9Y575 518 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 A0A1W2PQH9 124 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 MAGEA4P43358 317 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 INCA1Q0VD86 236 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 TSTA3Q13630 321 aaPredicted RBP8.53□□□□□ -1.04
PTPRD-204ENST00000397606 ANKRD20A8PQ5CZ79 823 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 RAP1GAP2Q684P5 730 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 KREMEN2Q8NCW0 462 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 TEKT4Q8WW24 435 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 ATP6V1E2Q96A05 226 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 C9orf72Q96LT7 481 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 RILPQ96NA2 401 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 C2orf49Q9BVC5 232 aaPredicted RBP8.53□□□□□ -1.04
PTPRD-204ENST00000397606 ZYG11BQ9C0D3 744 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 SCUBE2Q9NQ36 999 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 GMIPQ9P107 970 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 REXO2Q9Y3B8 237 aaKnown RBP8.53□□□□□ -1.04
PTPRD-204ENST00000397606 KAT6AQ92794 2004 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 CLUHO75153 1309 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 UBA6A0AVT1 1052 aaPredicted RBP8.53□□□□□ -1.04
PTPRD-204ENST00000397606 SERPINF2P08697 491 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 HOXD8P13378 290 aaPredicted RBP8.53□□□□□ -1.04
PTPRD-204ENST00000397606 RPL17P18621 184 aaKnown RBP8.53□□□□□ -1.04
PTPRD-204ENST00000397606 TAC1P20366 129 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 WEE1P30291 646 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 CARSP49589 748 aaKnown RBP8.53□□□□□ -1.04
PTPRD-204ENST00000397606 GPM6BQ13491 265 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 MORF4L2Q15014 288 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 MFSD5Q6N075 450 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 CSGALNACT1Q8TDX6 532 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 PPM1EQ8WY54 764 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 CABS1Q96KC9 395 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 ZMAT2Q96NC0 199 aaKnown RBP8.53□□□□□ -1.04
PTPRD-204ENST00000397606 NRDE2Q9H7Z3 1164 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 NT5MQ9NPB1 228 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 CHMP2BQ9UQN3 213 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 PKP3Q9Y446 797 aa8.53□□□□□ -1.04
PTPRD-204ENST00000397606 ZBTB42B2RXF5 422 aa8.52□□□□□ -1.05
PTPRD-204ENST00000397606 CHRNB2P17787 502 aa8.52□□□□□ -1.05
PTPRD-204ENST00000397606 NR1D1P20393 614 aa8.52□□□□□ -1.05
PTPRD-204ENST00000397606 GPD2P43304 727 aa8.52□□□□□ -1.05
PTPRD-204ENST00000397606 PTPN9P43378 593 aa8.52□□□□□ -1.05
PTPRD-204ENST00000397606 NAA30Q147X3 362 aaPredicted RBP8.52□□□□□ -1.05
PTPRD-204ENST00000397606 FAXCQ5TGI0 409 aa8.52□□□□□ -1.05
PTPRD-204ENST00000397606 RPAINQ86UA6 219 aa8.52□□□□□ -1.05
PTPRD-204ENST00000397606 TNS4Q8IZW8 715 aa8.52□□□□□ -1.05
PTPRD-204ENST00000397606 CCDC33Q8N5R6 958 aa8.52□□□□□ -1.05
PTPRD-204ENST00000397606 HJURPQ8NCD3 748 aaPredicted RBP8.52□□□□□ -1.05
PTPRD-204ENST00000397606 STAMBPL1Q96FJ0 436 aa8.52□□□□□ -1.05
PTPRD-204ENST00000397606 HES6Q96HZ4 224 aa8.52□□□□□ -1.05
PTPRD-204ENST00000397606 RNF157Q96PX1 679 aa8.52□□□□□ -1.05
PTPRD-204ENST00000397606 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.52□□□□□ -1.05
PTPRD-204ENST00000397606 SENP1Q9P0U3 644 aa8.52□□□□□ -1.05
PTPRD-204ENST00000397606 ECM29Q5VYK3 1845 aa8.52□□□□□ -1.05
PTPRD-204ENST00000397606 C8AP07357 584 aa8.52□□□□□ -1.05
PTPRD-204ENST00000397606 GALTP07902 379 aa8.52□□□□□ -1.05
PTPRD-204ENST00000397606 UNGP13051 313 aaPredicted RBP8.52□□□□□ -1.05
PTPRD-204ENST00000397606 FLT3P36888 993 aa8.52□□□□□ -1.05
PTPRD-204ENST00000397606 DAOAP59103 153 aa8.52□□□□□ -1.05
PTPRD-204ENST00000397606 ATAT1Q5SQI0 421 aa8.52□□□□□ -1.05
PTPRD-204ENST00000397606 MRPL10Q7Z7H8 261 aaKnown RBP8.52□□□□□ -1.05
PTPRD-204ENST00000397606 DENND1CQ8IV53 801 aa8.52□□□□□ -1.05
PTPRD-204ENST00000397606 PTPRN2Q92932 1015 aa8.52□□□□□ -1.05
PTPRD-204ENST00000397606 BADQ92934 168 aa8.52□□□□□ -1.05
PTPRD-204ENST00000397606 BTN2A3PQ96KV6 586 aa8.52□□□□□ -1.05
PTPRD-204ENST00000397606 ADGRE3Q9BY15 652 aa8.52□□□□□ -1.05
PTPRD-204ENST00000397606 VPS11Q9H270 941 aa8.52□□□□□ -1.05
PTPRD-204ENST00000397606 FAM50BQ9Y247 325 aa8.52□□□□□ -1.05
PTPRD-204ENST00000397606 C2orf81A6NN90 581 aa8.52□□□□□ -1.05
PTPRD-204ENST00000397606 C9IYK1 514 aa8.52□□□□□ -1.05
PTPRD-204ENST00000397606 STX7O15400 261 aaKnown RBP8.52□□□□□ -1.05
PTPRD-204ENST00000397606 CDH16O75309 829 aa8.52□□□□□ -1.05
PTPRD-204ENST00000397606 ATP5BP06576 529 aaKnown RBP8.52□□□□□ -1.05
PTPRD-204ENST00000397606 TYK2P29597 1187 aa8.52□□□□□ -1.05
PTPRD-204ENST00000397606 ADRA1BP35368 520 aa8.52□□□□□ -1.05
PTPRD-204ENST00000397606 KRT33BQ14525 404 aa8.52□□□□□ -1.05
PTPRD-204ENST00000397606 UPP1Q16831 310 aa8.52□□□□□ -1.05
PTPRD-204ENST00000397606 TTC23LQ6PF05 361 aa8.52□□□□□ -1.05
PTPRD-204ENST00000397606 PSTKQ8IV42 348 aaKnown RBP8.52□□□□□ -1.05
PTPRD-204ENST00000397606 CMTR2Q8IYT2 770 aaKnown RBP8.52□□□□□ -1.05
PTPRD-204ENST00000397606 COLGALT1Q8NBJ5 622 aa8.52□□□□□ -1.05
PTPRD-204ENST00000397606 MCUQ8NE86 351 aa8.52□□□□□ -1.05
PTPRD-204ENST00000397606 FBF1Q8TES7 1133 aa8.52□□□□□ -1.05
PTPRD-204ENST00000397606 PLCD4Q9BRC7 762 aa8.52□□□□□ -1.05
PTPRD-204ENST00000397606 CERS4Q9HA82 394 aa8.52□□□□□ -1.05
PTPRD-204ENST00000397606 KLHL14Q9P2G3 628 aa8.52□□□□□ -1.05
PTPRD-204ENST00000397606 CACNG4Q9UBN1 327 aa8.52□□□□□ -1.05
PTPRD-204ENST00000397606 SFMBT1Q9UHJ3 866 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms