RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 DAOAP59103 153 aa11.5□□□□□ -0.57
TCOF1-203ENST00000394269 FAAP100Q0VG06 881 aa11.5□□□□□ -0.57
TCOF1-203ENST00000394269 PTK7Q13308 1070 aa11.5□□□□□ -0.57
TCOF1-203ENST00000394269 SPRED3Q2MJR0 410 aa11.5□□□□□ -0.57
TCOF1-203ENST00000394269 STRADAQ7RTN6 431 aa11.5□□□□□ -0.57
TCOF1-203ENST00000394269 OR10T2Q8NGX3 314 aa11.5□□□□□ -0.57
TCOF1-203ENST00000394269 CAPNS2Q96L46 248 aa11.5□□□□□ -0.57
TCOF1-203ENST00000394269 NSRP1Q9H0G5 558 aaKnown RBP11.5□□□□□ -0.57
TCOF1-203ENST00000394269 UGT1A7Q9HAW7 530 aa11.5□□□□□ -0.57
TCOF1-203ENST00000394269 UGT1A10Q9HAW8 530 aa11.5□□□□□ -0.57
TCOF1-203ENST00000394269 UGT1A8Q9HAW9 530 aa11.5□□□□□ -0.57
TCOF1-203ENST00000394269 UNC80Q8N2C7 3258 aa11.5□□□□□ -0.57
TCOF1-203ENST00000394269 NT5C1B-RDH14C9J2C7 533 aa11.5□□□□□ -0.57
TCOF1-203ENST00000394269 RNF103O00237 685 aa11.5□□□□□ -0.57
TCOF1-203ENST00000394269 MSI1O43347 362 aaKnown RBP11.5□□□□□ -0.57
TCOF1-203ENST00000394269 HOXC8P31273 242 aa11.5□□□□□ -0.57
TCOF1-203ENST00000394269 ADRA1BP35368 520 aa11.5□□□□□ -0.57
TCOF1-203ENST00000394269 WDR4P57081 412 aaKnown RBP11.5□□□□□ -0.57
TCOF1-203ENST00000394269 SLC1A5Q15758 541 aa11.5□□□□□ -0.57
TCOF1-203ENST00000394269 SLC39A12Q504Y0 691 aa11.5□□□□□ -0.57
TCOF1-203ENST00000394269 ANKRD20A2Q5SQ80 823 aa11.5□□□□□ -0.57
TCOF1-203ENST00000394269 ANKRD20A1Q5TYW2 823 aa11.5□□□□□ -0.57
TCOF1-203ENST00000394269 ANKRD20A3Q5VUR7 823 aa11.5□□□□□ -0.57
TCOF1-203ENST00000394269 FBXW10Q5XX13 1052 aa11.5□□□□□ -0.57
TCOF1-203ENST00000394269 LVRNQ6Q4G3 990 aa11.5□□□□□ -0.57
TCOF1-203ENST00000394269 GLB1LQ6UWU2 654 aa11.5□□□□□ -0.57
TCOF1-203ENST00000394269 TTC16Q8NEE8 873 aa11.5□□□□□ -0.57
TCOF1-203ENST00000394269 CENPIQ92674 756 aaPredicted RBP11.5□□□□□ -0.57
TCOF1-203ENST00000394269 PGBD4Q96DM1 585 aa11.5□□□□□ -0.57
TCOF1-203ENST00000394269 P2RY11Q96G91 374 aa11.5□□□□□ -0.57
TCOF1-203ENST00000394269 SMARCD1Q96GM5 515 aa11.5□□□□□ -0.57
TCOF1-203ENST00000394269 FAM124BQ9H5Z6 455 aaPredicted RBP11.5□□□□□ -0.57
TCOF1-203ENST00000394269 VAV1P15498 845 aa11.5□□□□□ -0.57
TCOF1-203ENST00000394269 ZFXP17010 805 aaPredicted RBP11.5□□□□□ -0.57
TCOF1-203ENST00000394269 FOXN2P32314 431 aa11.5□□□□□ -0.57
TCOF1-203ENST00000394269 KCNJ11Q14654 390 aa11.5□□□□□ -0.57
TCOF1-203ENST00000394269 DDR2Q16832 855 aa11.5□□□□□ -0.57
TCOF1-203ENST00000394269 TNFAIP8L3Q5GJ75 292 aa11.5□□□□□ -0.57
TCOF1-203ENST00000394269 MROH9Q5TGP6 573 aa11.5□□□□□ -0.57
TCOF1-203ENST00000394269 SPATA2LQ8IUW3 424 aaPredicted RBP11.5□□□□□ -0.57
TCOF1-203ENST00000394269 TMEM86AQ8N2M4 240 aa11.5□□□□□ -0.57
TCOF1-203ENST00000394269 AGGF1Q8N302 714 aaeCLIP11.5□□□□□ -0.57
TCOF1-203ENST00000394269 CENPTQ96BT3 561 aa11.5□□□□□ -0.57
TCOF1-203ENST00000394269 STARD7Q9NQZ5 370 aa11.5□□□□□ -0.57
TCOF1-203ENST00000394269 SLC17A6Q9P2U8 582 aa11.5□□□□□ -0.57
TCOF1-203ENST00000394269 OR12D3Q9UGF7 316 aa11.5□□□□□ -0.57
TCOF1-203ENST00000394269 CDH9Q9ULB4 789 aa11.5□□□□□ -0.57
TCOF1-203ENST00000394269 CXorf49A8MYA2 514 aaPredicted RBP11.49□□□□□ -0.57
TCOF1-203ENST00000394269 SOAT2O75908 522 aa11.49□□□□□ -0.57
TCOF1-203ENST00000394269 ABHD2P08910 425 aa11.49□□□□□ -0.57
TCOF1-203ENST00000394269 TSPY1Q01534 308 aa11.49□□□□□ -0.57
TCOF1-203ENST00000394269 YWHAHQ04917 246 aaPredicted RBP11.49□□□□□ -0.57
TCOF1-203ENST00000394269 TRMT10BQ6PF06 316 aaKnown RBP11.49□□□□□ -0.57
TCOF1-203ENST00000394269 RFX8Q6ZV50 586 aa11.49□□□□□ -0.57
TCOF1-203ENST00000394269 CAND1Q86VP6 1230 aaKnown RBP11.49□□□□□ -0.57
TCOF1-203ENST00000394269 RELL1Q8IUW5 271 aa11.49□□□□□ -0.57
TCOF1-203ENST00000394269 THEM5Q8N1Q8 247 aa11.49□□□□□ -0.57
TCOF1-203ENST00000394269 TTC17Q96AE7 1141 aa11.49□□□□□ -0.57
TCOF1-203ENST00000394269 ATXN7L3BQ96GX2 97 aa11.49□□□□□ -0.57
TCOF1-203ENST00000394269 NPY6RQ99463 290 aa11.49□□□□□ -0.57
TCOF1-203ENST00000394269 TTC3P53804 2025 aa11.49□□□□□ -0.57
TCOF1-203ENST00000394269 WDR27A2RRH5 827 aa11.49□□□□□ -0.57
TCOF1-203ENST00000394269 I6L893 689 aaPredicted RBP11.49□□□□□ -0.57
TCOF1-203ENST00000394269 KIF3CO14782 793 aa11.49□□□□□ -0.57
TCOF1-203ENST00000394269 DAB1O75553 588 aa11.49□□□□□ -0.57
TCOF1-203ENST00000394269 ADRA1DP25100 572 aa11.49□□□□□ -0.57
TCOF1-203ENST00000394269 PSMB4P28070 264 aa11.49□□□□□ -0.57
TCOF1-203ENST00000394269 ATN1P54259 1190 aaPredicted RBP11.49□□□□□ -0.57
TCOF1-203ENST00000394269 NOGQ13253 232 aa11.49□□□□□ -0.57
TCOF1-203ENST00000394269 TUSC3Q13454 348 aa11.49□□□□□ -0.57
TCOF1-203ENST00000394269 KLHL38Q2WGJ6 581 aa11.49□□□□□ -0.57
TCOF1-203ENST00000394269 ZNF354CQ86Y25 554 aa11.49□□□□□ -0.57
TCOF1-203ENST00000394269 ABI1Q8IZP0 508 aa11.49□□□□□ -0.57
TCOF1-203ENST00000394269 DNAAF3Q8N9W5 541 aa11.49□□□□□ -0.57
TCOF1-203ENST00000394269 CCDC63Q8NA47 563 aa11.49□□□□□ -0.57
TCOF1-203ENST00000394269 TCP10LQ8TDR4 215 aa11.49□□□□□ -0.57
TCOF1-203ENST00000394269 NCAPGQ9BPX3 1015 aa11.49□□□□□ -0.57
TCOF1-203ENST00000394269 COLEC11Q9BWP8 271 aa11.49□□□□□ -0.57
TCOF1-203ENST00000394269 IQCGQ9H095 443 aaKnown RBP11.49□□□□□ -0.57
TCOF1-203ENST00000394269 ACSS3Q9H6R3 686 aa11.49□□□□□ -0.57
TCOF1-203ENST00000394269 DNAJB4Q9UDY4 337 aa11.49□□□□□ -0.57
TCOF1-203ENST00000394269 BCLAF3A2AJT9 711 aaKnown RBP11.48□□□□□ -0.57
TCOF1-203ENST00000394269 CFAP69A5D8W1 941 aa11.48□□□□□ -0.57
TCOF1-203ENST00000394269 DFFAO00273 331 aa11.48□□□□□ -0.57
TCOF1-203ENST00000394269 NDC80O14777 642 aa11.48□□□□□ -0.57
TCOF1-203ENST00000394269 B4GALT3O60512 393 aa11.48□□□□□ -0.57
TCOF1-203ENST00000394269 TADA2AO75478 443 aa11.48□□□□□ -0.57
TCOF1-203ENST00000394269 STK10O94804 968 aaKnown RBP11.48□□□□□ -0.57
TCOF1-203ENST00000394269 DDHD2O94830 711 aa11.48□□□□□ -0.57
TCOF1-203ENST00000394269 ALDH1A1P00352 501 aa11.48□□□□□ -0.57
TCOF1-203ENST00000394269 PYGBP11216 843 aa11.48□□□□□ -0.57
TCOF1-203ENST00000394269 CKBP12277 381 aa11.48□□□□□ -0.57
TCOF1-203ENST00000394269 RPL9P32969 192 aaKnown RBP11.48□□□□□ -0.57
TCOF1-203ENST00000394269 PGFP49763 221 aa11.48□□□□□ -0.57
TCOF1-203ENST00000394269 IRF5Q13568 498 aa11.48□□□□□ -0.57
TCOF1-203ENST00000394269 ARL13BQ3SXY8 428 aa11.48□□□□□ -0.57
TCOF1-203ENST00000394269 OTUD1Q5VV17 481 aaPredicted RBP11.48□□□□□ -0.57
TCOF1-203ENST00000394269 SMC1BQ8NDV3 1235 aa11.48□□□□□ -0.57
TCOF1-203ENST00000394269 FERMT1Q9BQL6 677 aa11.48□□□□□ -0.57
TCOF1-203ENST00000394269 RTP3Q9BQQ7 232 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms