RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 SMAD7O15105 426 aaKnown RBP-0.29□□□□□ -2.46
RNU6-540P-201ENST00000384622 GRM6O15303 877 aa-0.29□□□□□ -2.46
RNU6-540P-201ENST00000384622 PI15O43692 258 aa-0.29□□□□□ -2.46
RNU6-540P-201ENST00000384622 DHX16O60231 1041 aaKnown RBP-0.29□□□□□ -2.46
RNU6-540P-201ENST00000384622 AFPP02771 609 aaKnown RBP-0.29□□□□□ -2.46
RNU6-540P-201ENST00000384622 SBK3P0C264 359 aa-0.29□□□□□ -2.46
RNU6-540P-201ENST00000384622 SUMO2P61956 95 aaKnown RBP-0.29□□□□□ -2.46
RNU6-540P-201ENST00000384622 PAK2Q13177 524 aa-0.29□□□□□ -2.46
RNU6-540P-201ENST00000384622 MTA1Q13330 715 aa-0.29□□□□□ -2.46
RNU6-540P-201ENST00000384622 FAM189A2Q15884 450 aa-0.29□□□□□ -2.46
RNU6-540P-201ENST00000384622 ZFP69Q49AA0 526 aa-0.29□□□□□ -2.46
RNU6-540P-201ENST00000384622 TAF1BQ53T94 588 aaPredicted RBP-0.29□□□□□ -2.46
RNU6-540P-201ENST00000384622 TTC39AQ5SRH9 613 aa-0.29□□□□□ -2.46
RNU6-540P-201ENST00000384622 FHL5Q5TD97 284 aa-0.29□□□□□ -2.46
RNU6-540P-201ENST00000384622 WSCD1Q658N2 575 aa-0.29□□□□□ -2.46
RNU6-540P-201ENST00000384622 HIBCHQ6NVY1 386 aaPredicted RBP-0.29□□□□□ -2.46
RNU6-540P-201ENST00000384622 LCTLQ6UWM7 567 aa-0.29□□□□□ -2.46
RNU6-540P-201ENST00000384622 SLC16A12Q6ZSM3 486 aa-0.29□□□□□ -2.46
RNU6-540P-201ENST00000384622 ZNF365Q70YC5 407 aa-0.29□□□□□ -2.46
RNU6-540P-201ENST00000384622 CAND1Q86VP6 1230 aaKnown RBP-0.29□□□□□ -2.46
RNU6-540P-201ENST00000384622 LRRC47Q8N1G4 583 aaKnown RBP-0.29□□□□□ -2.46
RNU6-540P-201ENST00000384622 PNPLA1Q8N8W4 532 aa-0.29□□□□□ -2.46
RNU6-540P-201ENST00000384622 CHST14Q8NCH0 376 aa-0.29□□□□□ -2.46
RNU6-540P-201ENST00000384622 TMEM171Q8WVE6 324 aa-0.29□□□□□ -2.46
RNU6-540P-201ENST00000384622 PACSIN1Q9BY11 444 aa-0.29□□□□□ -2.46
RNU6-540P-201ENST00000384622 PIF1Q9H611 641 aa-0.29□□□□□ -2.46
RNU6-540P-201ENST00000384622 TLR8Q9NR97 1041 aaKnown RBP-0.29□□□□□ -2.46
RNU6-540P-201ENST00000384622 GABBR1Q9UBS5 961 aa-0.29□□□□□ -2.46
RNU6-540P-201ENST00000384622 KLK13Q9UKR3 277 aa-0.29□□□□□ -2.46
RNU6-540P-201ENST00000384622 NBEAL2Q6ZNJ1 2754 aa-0.29□□□□□ -2.46
RNU6-540P-201ENST00000384622 KIAA1109Q2LD37 5005 aa-0.29□□□□□ -2.46
RNU6-540P-201ENST00000384622 CACNA1GO43497 2377 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 IGLV5-37A0A075B6J1 123 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 TRBV23-1A0A0A0MS06 115 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 A0A1W2PS18 150 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 GAGE12JA6NER3 117 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 FAM220BPB1ANY3 271 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 C16orf97H3BN30 126 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 VWA5AO00534 786 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 SH2B2O14492 632 aaPredicted RBP-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 HNRNPDLO14979 420 aaKnown RBP-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 ERC2O15083 957 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 BCL2L11O43521 198 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 LIASO43766 372 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 DNAJC8O75937 253 aaPredicted RBP-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 ENDOD1O94919 500 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 ALDH2P05091 517 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 ST6GAL1P15907 406 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 TFEBP19484 476 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 COX10Q12887 443 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 LRRC32Q14392 662 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 TMEM187Q14656 261 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 KRTAP20-2Q3LI61 65 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 FLYWCH1Q4VC44 716 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 C20orf194Q5TEA3 1177 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 ARHGAP40Q5TG30 622 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 DCAF12L2Q5VW00 463 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 RBM44Q6ZP01 1051 aaKnown RBP-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 OAFQ86UD1 273 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 KCNMB4Q86W47 210 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 ZNF561Q8N587 486 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 ATP11CQ8NB49 1132 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 IL17RDQ8NFM7 739 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 OR10V1Q8NGI7 309 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 GABPB2Q8TAK5 448 aaPredicted RBP-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 MAML1Q92585 1016 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 AKAP1Q92667 903 aaKnown RBP eCLIP-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 KRT35Q92764 455 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 B3GALT6Q96L58 329 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 SYT11Q9BT88 431 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 CATSPERBQ9H7T0 1116 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 MAP6D1Q9H9H5 199 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 PRDM16Q9HAZ2 1276 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 KCNMB3Q9NPA1 279 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 B4GALT7Q9UBV7 327 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 NDOR1Q9UHB4 597 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 KCNG1Q9UIX4 513 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 ZDHHC8Q9ULC8 765 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 ABCA13Q86UQ4 5058 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 CKAP5Q14008 2032 aa-0.3□□□□□ -2.46
RNU6-540P-201ENST00000384622 BSNQ9UPA5 3926 aa-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 MYBBP1AQ9BQG0 1328 aaKnown RBP-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 ZFYVE26Q68DK2 2539 aa-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 IGHV4OR15-8A0A075B7B6 117 aa-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 A0A1W2PQ67 120 aa-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 TCERG1O14776 1098 aaKnown RBP-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 PCDH7O60245 1069 aa-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 BRD1O95696 1058 aa-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 ANXA1P04083 346 aa-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 AMY1AP04745 511 aa-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 PRB4P10163 310 aaPredicted RBP-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 CAPN2P17655 700 aa-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 UBA1P22314 1058 aaKnown RBP-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 CHRNB4P30926 498 aa-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 DIO1P49895 249 aa-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 PEX5P50542 639 aa-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 PMS2P54278 862 aa-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 UCNP55089 124 aa-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 GNB1P62873 340 aa-0.31□□□□□ -2.46
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms