RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 MAFFQ9ULX9 164 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 CORO2BQ9UQ03 480 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 OR2AT4A6NND4 320 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 CLIC2O15247 247 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 CHST10O43529 356 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 MATKP42679 507 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 CTDSPL2Q05D32 466 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 ZNF211Q13398 564 aaPredicted RBP8.94□□□□□ -0.98
LIG3-202ENST00000378526 GIT2Q14161 759 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 FRG1Q14331 258 aaKnown RBP8.94□□□□□ -0.98
LIG3-202ENST00000378526 ZNF235Q14590 738 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 DDX59Q5T1V6 619 aaKnown RBP eCLIP8.94□□□□□ -0.98
LIG3-202ENST00000378526 FBXO11Q86XK2 927 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 ITCHQ96J02 903 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 ASB14A6NK59 587 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 BTBD19C9JJ37 291 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 EYA2O00167 538 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 FCHO1O14526 889 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 RAD51CO43502 376 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 GUCY1A2P33402 732 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 GNA13Q14344 377 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 ATP13A4Q4VNC1 1196 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 FRMD5Q7Z6J6 570 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 CIR1Q86X95 450 aaPredicted RBP8.94□□□□□ -0.98
LIG3-202ENST00000378526 SLITRK4Q8IW52 837 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 SMYD1Q8NB12 490 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 ADAM32Q8TC27 787 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 ASB2Q96Q27 587 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 TMEM237Q96Q45 408 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 PIGSQ96S52 555 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 BHLHE41Q9C0J9 482 aaPredicted RBP8.94□□□□□ -0.98
LIG3-202ENST00000378526 ARHGAP28Q9P2N2 729 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 RPRD2Q5VT52 1461 aaKnown RBP8.94□□□□□ -0.98
LIG3-202ENST00000378526 MYH7BA7E2Y1 1941 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 M0R2C6 588 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 AP3M2P53677 418 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 AP3B2Q13367 1082 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 DLG2Q15700 870 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 DGKDQ16760 1214 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 JAMLQ86YT9 394 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 ZNF398Q8TD17 642 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 XAGE2Q96GT9 111 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 OXNAD1Q96HP4 312 aaPredicted RBP8.93□□□□□ -0.98
LIG3-202ENST00000378526 ARL5BQ96KC2 179 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 GRHL1Q9NZI5 618 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 GCC2Q8IWJ2 1684 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 PDE2AO00408 941 aaPredicted RBP8.93□□□□□ -0.98
LIG3-202ENST00000378526 NCK2O43639 380 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 PRLRP16471 622 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 MYBPC3Q14896 1274 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 PNMA1Q8ND90 353 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 SRFBP1Q8NEF9 429 aaKnown RBP8.93□□□□□ -0.98
LIG3-202ENST00000378526 ATP6V1C2Q8NEY4 427 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 HDAC7Q8WUI4 952 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 FAM111AQ96PZ2 611 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 MKNK1Q9BUB5 465 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 MYH13Q9UKX3 1938 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 PRAMEF33A0A0G2JMD5 474 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 PRAMEF10O60809 474 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 CD58P19256 250 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 FDFT1P37268 417 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 PABPC4Q13310 644 aaKnown RBP eCLIP8.93□□□□□ -0.981e-8■■□□□ 11.9
LIG3-202ENST00000378526 TCEAL6Q6IPX3 200 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 TMED8Q6PL24 325 aaPredicted RBP8.93□□□□□ -0.98
LIG3-202ENST00000378526 TRAPPC11Q7Z392 1133 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 ZNF540Q8NDQ6 660 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 RIN2Q8WYP3 895 aaPredicted RBP8.93□□□□□ -0.98
LIG3-202ENST00000378526 RBM12Q9NTZ6 932 aaKnown RBP8.93□□□□□ -0.98
LIG3-202ENST00000378526 TOR4AQ9NXH8 423 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 USP27XA6NNY8 438 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 HSBP1L1C9JCN9 74 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 DNM1LO00429 736 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 SCAMP1O15126 338 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 MSH4O15457 936 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 DBTP11182 482 aaKnown RBP8.93□□□□□ -0.98
LIG3-202ENST00000378526 IFI30P13284 250 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 RARGP13631 454 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 RAB4AP20338 218 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 PSMA1P25786 263 aaKnown RBP8.93□□□□□ -0.98
LIG3-202ENST00000378526 SMIM11AP58511 58 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 CCNA1P78396 465 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 CLCA4Q14CN2 919 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 THEMISQ8N1K5 641 aaPredicted RBP8.93□□□□□ -0.98
LIG3-202ENST00000378526 EIF1ADQ8N9N8 165 aaKnown RBP8.93□□□□□ -0.98
LIG3-202ENST00000378526 VANGL1Q8TAA9 524 aaPredicted RBP8.93□□□□□ -0.98
LIG3-202ENST00000378526 CCDC107Q8WV48 283 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 MKL1Q969V6 931 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 SLC35C2Q9NQQ7 365 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 EIF3KQ9UBQ5 218 aaKnown RBP8.93□□□□□ -0.98
LIG3-202ENST00000378526 NDUFAF1Q9Y375 327 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 PCDHGA12O60330 932 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 GPD2P43304 727 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 NRF1Q16656 503 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 ZMYM1Q5SVZ6 1142 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 CLEC17AQ6ZS10 378 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 HIPK1Q86Z02 1210 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 ELMOD2Q8IZ81 293 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 HM13Q8TCT9 377 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 RNF145Q96MT1 663 aa8.93□□□□□ -0.98
LIG3-202ENST00000378526 SUGCTQ9HAC7 445 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms