RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 SEC13P55735 322 aa13.89□□□□□ -0.19
VPS28-202ENST00000377348 TCF15Q12870 199 aa13.89□□□□□ -0.19
VPS28-202ENST00000377348 FAM133BQ5BKY9 247 aaKnown RBP13.89□□□□□ -0.19
VPS28-202ENST00000377348 DGKKQ5KSL6 1271 aa13.89□□□□□ -0.19
VPS28-202ENST00000377348 ACAD10Q6JQN1 1059 aa13.89□□□□□ -0.19
VPS28-202ENST00000377348 SARM1Q6SZW1 724 aa13.89□□□□□ -0.19
VPS28-202ENST00000377348 C1orf210Q8IVY1 113 aa13.89□□□□□ -0.19
VPS28-202ENST00000377348 PHTF2Q8N3S3 785 aa13.89□□□□□ -0.19
VPS28-202ENST00000377348 CPXM2Q8N436 756 aa13.89□□□□□ -0.19
VPS28-202ENST00000377348 JOSD2Q8TAC2 188 aa13.89□□□□□ -0.19
VPS28-202ENST00000377348 MYEOVQ96EZ4 313 aa13.89□□□□□ -0.19
VPS28-202ENST00000377348 CFAP57Q96MR6 1250 aa13.89□□□□□ -0.19
VPS28-202ENST00000377348 PNKPQ96T60 521 aa13.89□□□□□ -0.19
VPS28-202ENST00000377348 TBCBQ99426 244 aa13.89□□□□□ -0.19
VPS28-202ENST00000377348 NPY6RQ99463 290 aa13.89□□□□□ -0.19
VPS28-202ENST00000377348 ARHGEF4Q9NR80 690 aa13.89□□□□□ -0.19
VPS28-202ENST00000377348 DNAJC17Q9NVM6 304 aaKnown RBP13.89□□□□□ -0.19
VPS28-202ENST00000377348 WDR35Q9P2L0 1181 aa13.89□□□□□ -0.19
VPS28-202ENST00000377348 STOML2Q9UJZ1 356 aa13.89□□□□□ -0.19
VPS28-202ENST00000377348 CLEC4EQ9ULY5 219 aa13.89□□□□□ -0.19
VPS28-202ENST00000377348 MYO15AQ9UKN7 3530 aa13.89□□□□□ -0.19
VPS28-202ENST00000377348 H0Y858 1186 aa13.88□□□□□ -0.19
VPS28-202ENST00000377348 K7EQS6 105 aa13.88□□□□□ -0.19
VPS28-202ENST00000377348 GFRA2O00451 464 aa13.88□□□□□ -0.19
VPS28-202ENST00000377348 CACNG3O60359 315 aa13.88□□□□□ -0.19
VPS28-202ENST00000377348 KAT7O95251 611 aa13.88□□□□□ -0.19
VPS28-202ENST00000377348 LATS1O95835 1130 aa13.88□□□□□ -0.19
VPS28-202ENST00000377348 PENKP01210 267 aaPredicted RBP13.88□□□□□ -0.19
VPS28-202ENST00000377348 APOEP02649 317 aa13.88□□□□□ -0.19
VPS28-202ENST00000377348 CALB1P05937 261 aa13.88□□□□□ -0.19
VPS28-202ENST00000377348 HOXC13P31276 330 aa13.88□□□□□ -0.19
VPS28-202ENST00000377348 GBP1P32455 592 aa13.88□□□□□ -0.19
VPS28-202ENST00000377348 EIF2DP41214 584 aaKnown RBP13.88□□□□□ -0.19
VPS28-202ENST00000377348 MAGEA9P43362 315 aa13.88□□□□□ -0.19
VPS28-202ENST00000377348 SLC11A2P49281 568 aa13.88□□□□□ -0.19
VPS28-202ENST00000377348 ANGPT1Q15389 498 aa13.88□□□□□ -0.19
VPS28-202ENST00000377348 ADGRF1Q5T601 910 aa13.88□□□□□ -0.19
VPS28-202ENST00000377348 GRAMD4Q6IC98 578 aa13.88□□□□□ -0.19
VPS28-202ENST00000377348 MCOLN2Q8IZK6 566 aa13.88□□□□□ -0.19
VPS28-202ENST00000377348 MAML2Q8IZL2 1156 aaPredicted RBP13.88□□□□□ -0.19
VPS28-202ENST00000377348 DDI1Q8WTU0 396 aa13.88□□□□□ -0.19
VPS28-202ENST00000377348 SYN2Q92777 582 aaPredicted RBP13.88□□□□□ -0.19
VPS28-202ENST00000377348 RNF34Q969K3 372 aa13.88□□□□□ -0.19
VPS28-202ENST00000377348 EXOC4Q96A65 974 aa13.88□□□□□ -0.19
VPS28-202ENST00000377348 IQCDQ96DY2 449 aa13.88□□□□□ -0.19
VPS28-202ENST00000377348 XPO6Q96QU8 1125 aaKnown RBP13.88□□□□□ -0.19
VPS28-202ENST00000377348 TRIM5Q9C035 493 aa13.88□□□□□ -0.19
VPS28-202ENST00000377348 NUCKS1Q9H1E3 243 aaKnown RBP13.88□□□□□ -0.19
VPS28-202ENST00000377348 ZDHHC4Q9NPG8 344 aa13.88□□□□□ -0.19
VPS28-202ENST00000377348 PIGVQ9NUD9 493 aa13.88□□□□□ -0.19
VPS28-202ENST00000377348 POLR3BQ9NW08 1133 aaPredicted RBP13.88□□□□□ -0.19
VPS28-202ENST00000377348 DEC1Q9P2X7 70 aa13.88□□□□□ -0.19
VPS28-202ENST00000377348 STAP1Q9ULZ2 295 aa13.88□□□□□ -0.19
VPS28-202ENST00000377348 CACNA1IQ9P0X4 2223 aa13.88□□□□□ -0.19
VPS28-202ENST00000377348 TCRBV5S1A1TA0A578 114 aa13.87□□□□□ -0.19
VPS28-202ENST00000377348 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.87□□□□□ -0.19
VPS28-202ENST00000377348 ATMINO43313 823 aaPredicted RBP13.87□□□□□ -0.19
VPS28-202ENST00000377348 LAMTOR5O43504 91 aa13.87□□□□□ -0.19
VPS28-202ENST00000377348 CYBBP04839 570 aa13.87□□□□□ -0.19
VPS28-202ENST00000377348 APODP05090 189 aa13.87□□□□□ -0.19
VPS28-202ENST00000377348 CISD3P0C7P0 127 aa13.87□□□□□ -0.19
VPS28-202ENST00000377348 RRM1P23921 792 aa13.87□□□□□ -0.19
VPS28-202ENST00000377348 HOXD9P28356 352 aaPredicted RBP13.87□□□□□ -0.19
VPS28-202ENST00000377348 CCR1P32246 355 aa13.87□□□□□ -0.19
VPS28-202ENST00000377348 GRIA2P42262 883 aa13.87□□□□□ -0.19
VPS28-202ENST00000377348 NUBP1P53384 320 aa13.87□□□□□ -0.19
VPS28-202ENST00000377348 SATB1Q01826 763 aa13.87□□□□□ -0.19
VPS28-202ENST00000377348 C1QBPQ07021 282 aaKnown RBP13.87□□□□□ -0.19
VPS28-202ENST00000377348 MPPE1Q53F39 396 aa13.87□□□□□ -0.19
VPS28-202ENST00000377348 RAB6CQ53S08 254 aa13.87□□□□□ -0.19
VPS28-202ENST00000377348 EMC10Q5UCC4 262 aa13.87□□□□□ -0.19
VPS28-202ENST00000377348 RAP1GAP2Q684P5 730 aa13.87□□□□□ -0.19
VPS28-202ENST00000377348 TSSK4Q6SA08 328 aa13.87□□□□□ -0.19
VPS28-202ENST00000377348 TMC6Q7Z403 805 aa13.87□□□□□ -0.19
VPS28-202ENST00000377348 SYNPOQ8N3V7 929 aa13.87□□□□□ -0.19
VPS28-202ENST00000377348 TERB1Q8NA31 727 aa13.87□□□□□ -0.19
VPS28-202ENST00000377348 C3orf20Q8ND61 904 aa13.87□□□□□ -0.19
VPS28-202ENST00000377348 RPLP0P6Q8NHW5 317 aa13.87□□□□□ -0.19
VPS28-202ENST00000377348 RXFP2Q8WXD0 754 aa13.87□□□□□ -0.19
VPS28-202ENST00000377348 NT5C3BQ969T7 300 aa13.87□□□□□ -0.19
VPS28-202ENST00000377348 AZIN2Q96A70 460 aa13.87□□□□□ -0.19
VPS28-202ENST00000377348 TMA16Q96EY4 203 aaKnown RBP13.87□□□□□ -0.19
VPS28-202ENST00000377348 PRICKLE1Q96MT3 831 aaPredicted RBP13.87□□□□□ -0.19
VPS28-202ENST00000377348 SELENOOQ9BVL4 669 aa13.87□□□□□ -0.19
VPS28-202ENST00000377348 RAB6CQ9H0N0 254 aa13.87□□□□□ -0.19
VPS28-202ENST00000377348 ANLNQ9NQW6 1124 aa13.87□□□□□ -0.19
VPS28-202ENST00000377348 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.87□□□□□ -0.19
VPS28-202ENST00000377348 ARHGAP20Q9P2F6 1191 aa13.87□□□□□ -0.19
VPS28-202ENST00000377348 ATG2BQ96BY7 2078 aa13.87□□□□□ -0.19
VPS28-202ENST00000377348 VPS13AQ96RL7 3174 aa13.86□□□□□ -0.19
VPS28-202ENST00000377348 KIAA1549LQ6ZVL6 1849 aa13.86□□□□□ -0.19
VPS28-202ENST00000377348 TBC1D3BA6NDS4 549 aa13.86□□□□□ -0.19
VPS28-202ENST00000377348 KCNU1A8MYU2 1149 aa13.86□□□□□ -0.19
VPS28-202ENST00000377348 PRRT4C9JH25 899 aa13.86□□□□□ -0.19
VPS28-202ENST00000377348 ADCY5O95622 1261 aa13.86□□□□□ -0.19
VPS28-202ENST00000377348 SERPING1P05155 500 aa13.86□□□□□ -0.19
VPS28-202ENST00000377348 KRT3P12035 628 aa13.86□□□□□ -0.19
VPS28-202ENST00000377348 ABCB4P21439 1286 aa13.86□□□□□ -0.19
VPS28-202ENST00000377348 RFC1P35251 1148 aaPredicted RBP13.86□□□□□ -0.19
VPS28-202ENST00000377348 GGCXP38435 758 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms