RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 NUGGCQ68CJ6 796 aa22.61■■□□□ 1.21
CCDC28B-201ENST00000373602 SMYD5Q6GMV2 418 aa22.61■■□□□ 1.21
CCDC28B-201ENST00000373602 CLEC17AQ6ZS10 378 aa22.61■■□□□ 1.21
CCDC28B-201ENST00000373602 UNC45BQ8IWX7 931 aa22.61■■□□□ 1.21
CCDC28B-201ENST00000373602 TMA16Q96EY4 203 aaKnown RBP22.61■■□□□ 1.21
CCDC28B-201ENST00000373602 NUP62CLQ9H1M0 184 aa22.61■■□□□ 1.21
CCDC28B-201ENST00000373602 ACP6Q9NPH0 428 aa22.61■■□□□ 1.21
CCDC28B-201ENST00000373602 ELOVL2Q9NXB9 296 aa22.61■■□□□ 1.21
CCDC28B-201ENST00000373602 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa22.6■■□□□ 1.21
CCDC28B-201ENST00000373602 THAP12O43422 761 aa22.6■■□□□ 1.21
CCDC28B-201ENST00000373602 NCAM1P13591 858 aa22.6■■□□□ 1.21
CCDC28B-201ENST00000373602 ERCC5P28715 1186 aaPredicted RBP22.6■■□□□ 1.21
CCDC28B-201ENST00000373602 IL12RB1P42701 662 aa22.6■■□□□ 1.21
CCDC28B-201ENST00000373602 TBX4P57082 545 aa22.6■■□□□ 1.21
CCDC28B-201ENST00000373602 E2F5Q15329 346 aa22.6■■□□□ 1.21
CCDC28B-201ENST00000373602 MAN2A1Q16706 1144 aa22.6■■□□□ 1.21
CCDC28B-201ENST00000373602 ARHGAP44Q17R89 818 aa22.6■■□□□ 1.21
CCDC28B-201ENST00000373602 STPG1Q5TH74 334 aa22.6■■□□□ 1.21
CCDC28B-201ENST00000373602 IL31Q6EBC2 164 aa22.6■■□□□ 1.21
CCDC28B-201ENST00000373602 BEND5Q7L4P6 421 aa22.6■■□□□ 1.21
CCDC28B-201ENST00000373602 TMEFF1Q8IYR6 380 aa22.6■■□□□ 1.21
CCDC28B-201ENST00000373602 SHC3Q92529 594 aa22.6■■□□□ 1.21
CCDC28B-201ENST00000373602 AZIN2Q96A70 460 aa22.6■■□□□ 1.21
CCDC28B-201ENST00000373602 IRX2Q9BZI1 471 aaPredicted RBP22.6■■□□□ 1.21
CCDC28B-201ENST00000373602 CYTH4Q9UIA0 394 aa22.6■■□□□ 1.21
CCDC28B-201ENST00000373602 TM4SF5O14894 197 aa22.59■■□□□ 1.21
CCDC28B-201ENST00000373602 TIMM44O43615 452 aa22.59■■□□□ 1.21
CCDC28B-201ENST00000373602 ZNF217O75362 1048 aa22.59■■□□□ 1.21
CCDC28B-201ENST00000373602 PTGER3P43115 390 aa22.59■■□□□ 1.21
CCDC28B-201ENST00000373602 SLC11A2P49281 568 aa22.59■■□□□ 1.21
CCDC28B-201ENST00000373602 NNTQ13423 1086 aa22.59■■□□□ 1.21
CCDC28B-201ENST00000373602 TMEM215Q68D42 235 aa22.59■■□□□ 1.21
CCDC28B-201ENST00000373602 SLC36A4Q6YBV0 504 aa22.59■■□□□ 1.21
CCDC28B-201ENST00000373602 TMEM110Q86TL2 294 aa22.59■■□□□ 1.21
CCDC28B-201ENST00000373602 FAM114A1Q8IWE2 563 aa22.59■■□□□ 1.21
CCDC28B-201ENST00000373602 DQX1Q8TE96 717 aaKnown RBP22.59■■□□□ 1.21
CCDC28B-201ENST00000373602 PIGKQ92643 395 aa22.59■■□□□ 1.21
CCDC28B-201ENST00000373602 ERLEC1Q96DZ1 483 aa22.59■■□□□ 1.21
CCDC28B-201ENST00000373602 MRGPRX1Q96LB2 322 aa22.59■■□□□ 1.21
CCDC28B-201ENST00000373602 SIX2Q9NPC8 291 aa22.59■■□□□ 1.21
CCDC28B-201ENST00000373602 DACH1Q9UI36 760 aa22.59■■□□□ 1.21
CCDC28B-201ENST00000373602 NAALADL1Q9UQQ1 740 aa22.59■■□□□ 1.21
CCDC28B-201ENST00000373602 IGHV1OR15-9A0A0B4J2B8 117 aa22.58■■□□□ 1.21
CCDC28B-201ENST00000373602 KHNYNO15037 678 aaKnown RBP22.58■■□□□ 1.21
CCDC28B-201ENST00000373602 PAPSS1O43252 624 aaPredicted RBP22.58■■□□□ 1.21
CCDC28B-201ENST00000373602 ACSL4O60488 711 aa22.58■■□□□ 1.21
CCDC28B-201ENST00000373602 HLA-FP30511 346 aa22.58■■□□□ 1.21
CCDC28B-201ENST00000373602 USP8P40818 1118 aa22.58■■□□□ 1.21
CCDC28B-201ENST00000373602 STARD3Q14849 445 aa22.58■■□□□ 1.21
CCDC28B-201ENST00000373602 FAM133BQ5BKY9 247 aaKnown RBP22.58■■□□□ 1.21
CCDC28B-201ENST00000373602 RNF43Q68DV7 783 aa22.58■■□□□ 1.21
CCDC28B-201ENST00000373602 ARMCX6Q7L4S7 300 aa22.58■■□□□ 1.21
CCDC28B-201ENST00000373602 DDX51Q8N8A6 666 aaKnown RBP eCLIP22.58■■□□□ 1.21
CCDC28B-201ENST00000373602 DDX1Q92499 740 aaKnown RBP22.58■■□□□ 1.21
CCDC28B-201ENST00000373602 FAM149B1Q96BN6 582 aa22.58■■□□□ 1.21
CCDC28B-201ENST00000373602 FCRL2Q96LA5 508 aaPredicted RBP22.58■■□□□ 1.21
CCDC28B-201ENST00000373602 SERPINB11Q96P15 392 aa22.58■■□□□ 1.21
CCDC28B-201ENST00000373602 EDEM2Q9BV94 578 aa22.58■■□□□ 1.21
CCDC28B-201ENST00000373602 TRIM62Q9BVG3 475 aa22.58■■□□□ 1.21
CCDC28B-201ENST00000373602 GOLGA6L7A0A1B0GV03 622 aa22.57■■□□□ 1.2
CCDC28B-201ENST00000373602 LNP1A1A4G5 178 aa22.57■■□□□ 1.2
CCDC28B-201ENST00000373602 PATE3B3GLJ2 98 aa22.57■■□□□ 1.2
CCDC28B-201ENST00000373602 E5RJQ4 531 aa22.57■■□□□ 1.2
CCDC28B-201ENST00000373602 IRAK2O43187 625 aa22.57■■□□□ 1.2
CCDC28B-201ENST00000373602 AP5Z1O43299 807 aa22.57■■□□□ 1.2
CCDC28B-201ENST00000373602 SLC6A4P31645 630 aa22.57■■□□□ 1.2
CCDC28B-201ENST00000373602 DPP6P42658 865 aa22.57■■□□□ 1.2
CCDC28B-201ENST00000373602 SGSHP51688 502 aa22.57■■□□□ 1.2
CCDC28B-201ENST00000373602 RPL6Q02878 288 aaKnown RBP22.57■■□□□ 1.2
CCDC28B-201ENST00000373602 ZNF234Q14588 700 aa22.57■■□□□ 1.2
CCDC28B-201ENST00000373602 FUT11Q495W5 492 aa22.57■■□□□ 1.2
CCDC28B-201ENST00000373602 PPM1JQ5JR12 505 aa22.57■■□□□ 1.2
CCDC28B-201ENST00000373602 MPP7Q5T2T1 576 aa22.57■■□□□ 1.2
CCDC28B-201ENST00000373602 PIK3R6Q5UE93 754 aa22.57■■□□□ 1.2
CCDC28B-201ENST00000373602 LYSMD4Q5XG99 296 aa22.57■■□□□ 1.2
CCDC28B-201ENST00000373602 RFWD3Q6PCD5 774 aa22.57■■□□□ 1.2
CCDC28B-201ENST00000373602 KIAA0907Q7Z7F0 614 aaPredicted RBP22.57■■□□□ 1.2
CCDC28B-201ENST00000373602 SYT12Q8IV01 421 aa22.57■■□□□ 1.2
CCDC28B-201ENST00000373602 WFIKKN2Q8TEU8 576 aa22.57■■□□□ 1.2
CCDC28B-201ENST00000373602 SLC39A13Q96H72 371 aa22.57■■□□□ 1.2
CCDC28B-201ENST00000373602 CIPCQ9C0C6 399 aa22.57■■□□□ 1.2
CCDC28B-201ENST00000373602 SLC6A17Q9H1V8 727 aa22.57■■□□□ 1.2
CCDC28B-201ENST00000373602 NDST4Q9H3R1 872 aa22.57■■□□□ 1.2
CCDC28B-201ENST00000373602 LMBRD1Q9NUN5 540 aa22.57■■□□□ 1.2
CCDC28B-201ENST00000373602 EVLQ9UI08 416 aaPredicted RBP22.57■■□□□ 1.2
CCDC28B-201ENST00000373602 CYP8B1Q9UNU6 501 aa22.57■■□□□ 1.2
CCDC28B-201ENST00000373602 TLR6Q9Y2C9 796 aa22.57■■□□□ 1.2
CCDC28B-201ENST00000373602 TNRC6BQ9UPQ9 1833 aaKnown RBP22.57■■□□□ 1.2
CCDC28B-201ENST00000373602 PDCLQ13371 301 aa22.56■■□□□ 1.2
CCDC28B-201ENST00000373602 VWA3BQ502W6 1294 aa22.56■■□□□ 1.2
CCDC28B-201ENST00000373602 MIIPQ5JXC2 388 aa22.56■■□□□ 1.2
CCDC28B-201ENST00000373602 SYPL2Q5VXT5 272 aa22.56■■□□□ 1.2
CCDC28B-201ENST00000373602 METTL3Q86U44 580 aaKnown RBP22.56■■□□□ 1.2
CCDC28B-201ENST00000373602 SORCS1Q8WY21 1168 aa22.56■■□□□ 1.2
CCDC28B-201ENST00000373602 TMEM74BQ9NUR3 256 aa22.56■■□□□ 1.2
CCDC28B-201ENST00000373602 DNAJC12Q9UKB3 198 aa22.56■■□□□ 1.2
CCDC28B-201ENST00000373602 AJAP1Q9UKB5 411 aaPredicted RBP22.56■■□□□ 1.2
CCDC28B-201ENST00000373602 PCDHGC3Q9UN70 934 aa22.56■■□□□ 1.2
CCDC28B-201ENST00000373602 CAPN9O14815 690 aa22.55■■□□□ 1.2
CCDC28B-201ENST00000373602 PRKCSHP14314 528 aaPredicted RBP22.55■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms