RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 CLASP1Q7Z460 1538 aa4.22□□□□□ -1.73
USH2A-202ENST00000366942 ZNF614Q8N883 585 aa4.22□□□□□ -1.73
USH2A-202ENST00000366942 SIDT2Q8NBJ9 832 aaKnown RBP4.22□□□□□ -1.73
USH2A-202ENST00000366942 POF1BQ8WVV4 589 aa4.22□□□□□ -1.73
USH2A-202ENST00000366942 ATL1Q8WXF7 558 aa4.22□□□□□ -1.73
USH2A-202ENST00000366942 FBXW5Q969U6 566 aa4.22□□□□□ -1.73
USH2A-202ENST00000366942 DACT3Q96B18 629 aaPredicted RBP4.22□□□□□ -1.73
USH2A-202ENST00000366942 RBM41Q96IZ5 413 aaKnown RBP4.22□□□□□ -1.73
USH2A-202ENST00000366942 ISCA1Q9BUE6 129 aa4.22□□□□□ -1.73
USH2A-202ENST00000366942 LMAN1LQ9HAT1 526 aa4.22□□□□□ -1.73
USH2A-202ENST00000366942 ATP13A1Q9HD20 1204 aa4.22□□□□□ -1.73
USH2A-202ENST00000366942 KBTBD4Q9NVX7 518 aa4.22□□□□□ -1.73
USH2A-202ENST00000366942 GTSE1Q9NYZ3 720 aa4.22□□□□□ -1.73
USH2A-202ENST00000366942 RUSC2Q8N2Y8 1516 aa4.21□□□□□ -1.73
USH2A-202ENST00000366942 RGS12O14924 1447 aa4.21□□□□□ -1.73
USH2A-202ENST00000366942 A0A096LPK6 155 aa4.21□□□□□ -1.73
USH2A-202ENST00000366942 K7ELQ4 463 aaPredicted RBP4.21□□□□□ -1.73
USH2A-202ENST00000366942 DFFAO00273 331 aa4.21□□□□□ -1.73
USH2A-202ENST00000366942 TUBB4AP04350 444 aa4.21□□□□□ -1.73
USH2A-202ENST00000366942 COX6B1P14854 86 aa4.21□□□□□ -1.73
USH2A-202ENST00000366942 ACO1P21399 889 aaKnown RBP4.21□□□□□ -1.73
USH2A-202ENST00000366942 ITGA3P26006 1051 aa4.21□□□□□ -1.73
USH2A-202ENST00000366942 IL13P35225 146 aa4.21□□□□□ -1.73
USH2A-202ENST00000366942 PEX19P40855 299 aa4.21□□□□□ -1.73
USH2A-202ENST00000366942 SULT1E1P49888 294 aa4.21□□□□□ -1.73
USH2A-202ENST00000366942 MNX1P50219 401 aaPredicted RBP4.21□□□□□ -1.73
USH2A-202ENST00000366942 TBX4P57082 545 aa4.21□□□□□ -1.73
USH2A-202ENST00000366942 KLHL40Q2TBA0 621 aa4.21□□□□□ -1.73
USH2A-202ENST00000366942 P3H1Q32P28 736 aa4.21□□□□□ -1.73
USH2A-202ENST00000366942 FASTKD1Q53R41 847 aaKnown RBP4.21□□□□□ -1.73
USH2A-202ENST00000366942 ARMC3Q5W041 872 aa4.21□□□□□ -1.73
USH2A-202ENST00000366942 VITQ6UXI7 678 aa4.21□□□□□ -1.73
USH2A-202ENST00000366942 CFAP52Q8N1V2 620 aa4.21□□□□□ -1.73
USH2A-202ENST00000366942 CHDHQ8NE62 594 aaPredicted RBP4.21□□□□□ -1.73
USH2A-202ENST00000366942 TOR1AIP2Q8NFQ8 470 aa4.21□□□□□ -1.73
USH2A-202ENST00000366942 TBCKQ8TEA7 893 aa4.21□□□□□ -1.73
USH2A-202ENST00000366942 DIS3LQ8TF46 1054 aaKnown RBP4.21□□□□□ -1.73
USH2A-202ENST00000366942 TOX2Q96NM4 488 aa4.21□□□□□ -1.73
USH2A-202ENST00000366942 MLPHQ9BV36 600 aaPredicted RBP4.21□□□□□ -1.73
USH2A-202ENST00000366942 FAIM2Q9BWQ8 316 aa4.21□□□□□ -1.73
USH2A-202ENST00000366942 ROGDIQ9GZN7 287 aa4.21□□□□□ -1.73
USH2A-202ENST00000366942 TIGARQ9NQ88 270 aa4.21□□□□□ -1.73
USH2A-202ENST00000366942 NSMCE4AQ9NXX6 385 aa4.21□□□□□ -1.73
USH2A-202ENST00000366942 MAPRE3Q9UPY8 281 aa4.21□□□□□ -1.73
USH2A-202ENST00000366942 ENTPD4Q9Y227 616 aa4.21□□□□□ -1.73
USH2A-202ENST00000366942 CNTNAP1P78357 1384 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 PASKQ96RG2 1323 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 CFLARO15519 480 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 ONECUT3O60422 494 aaPredicted RBP4.21□□□□□ -1.74
USH2A-202ENST00000366942 SLC25A12O75746 678 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 KRT16P08779 473 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 IRS1P35568 1242 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 NRG3P56975 720 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 SPIRE1Q08AE8 756 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 ITGA9Q13797 1035 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 PTK6Q13882 451 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 KCNC3Q14003 757 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 OTUD3Q5T2D3 398 aaPredicted RBP4.21□□□□□ -1.74
USH2A-202ENST00000366942 PLA2G4FQ68DD2 849 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 ANKRD40Q6AI12 368 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 CCDC81Q6ZN84 652 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 YTHDF3Q7Z739 585 aaKnown RBP4.21□□□□□ -1.74
USH2A-202ENST00000366942 SLC44A2Q8IWA5 706 aaPredicted RBP4.21□□□□□ -1.74
USH2A-202ENST00000366942 SIX5Q8N196 739 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 ZFP28Q8NHY6 868 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 C18orf25Q96B23 403 aaPredicted RBP4.21□□□□□ -1.74
USH2A-202ENST00000366942 SMARCD1Q96GM5 515 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 ZDHHC12Q96GR4 267 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 YIPF4Q9BSR8 244 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 MRPL1Q9BYD6 325 aaKnown RBP4.21□□□□□ -1.74
USH2A-202ENST00000366942 MRGBPQ9NV56 204 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 CFL2Q9Y281 166 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 STK38LQ9Y2H1 464 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 COL1A2P08123 1366 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 ISM1B1AKI9 464 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 SLC28A1O00337 649 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 TP53I11O14683 189 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 LILRB3O75022 631 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 SRGAP2O75044 1071 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 IRF2P14316 349 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 ATP5A1P25705 553 aaKnown RBP4.21□□□□□ -1.74
USH2A-202ENST00000366942 BMPR1AP36894 532 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 OVGP1Q12889 678 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 BOP1Q14137 746 aaKnown RBP4.21□□□□□ -1.74
USH2A-202ENST00000366942 FAM214AQ32MH5 1076 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 MMEL1Q495T6 779 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 KCNT1Q5JUK3 1230 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 LAIR1Q6GTX8 287 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 RAET1GQ6H3X3 334 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 ATG14Q6ZNE5 492 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 CATSPERGQ6ZRH7 1159 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 CACUL1Q86Y37 369 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 ADGRF2Q8IZF7 708 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 SNX31Q8N9S9 440 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 COL26A1Q96A83 441 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 PRRG3Q9BZD7 231 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 KLHL25Q9H0H3 589 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 ATP13A3Q9H7F0 1226 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 SMYD2Q9NRG4 433 aa4.21□□□□□ -1.74
USH2A-202ENST00000366942 SNX7Q9UNH6 387 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms