RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 KRT6CP48668 564 aa12.05□□□□□ -0.48
COL9A1-202ENST00000357250 NCALDP61601 193 aa12.05□□□□□ -0.48
COL9A1-202ENST00000357250 MMRN1Q13201 1228 aa12.05□□□□□ -0.48
COL9A1-202ENST00000357250 PKN2Q16513 984 aaKnown RBP12.05□□□□□ -0.48
COL9A1-202ENST00000357250 NFIL3Q16649 462 aa12.05□□□□□ -0.48
COL9A1-202ENST00000357250 TRIM60Q495X7 471 aa12.05□□□□□ -0.48
COL9A1-202ENST00000357250 CTXN3Q4LDR2 81 aa12.05□□□□□ -0.48
COL9A1-202ENST00000357250 OOSP2Q86WS3 158 aa12.05□□□□□ -0.48
COL9A1-202ENST00000357250 PHACTR1Q9C0D0 580 aa12.05□□□□□ -0.48
COL9A1-202ENST00000357250 IL1RL2Q9HB29 575 aa12.05□□□□□ -0.48
COL9A1-202ENST00000357250 KCNMB3Q9NPA1 279 aa12.05□□□□□ -0.48
COL9A1-202ENST00000357250 TLR8Q9NR97 1041 aaKnown RBP12.05□□□□□ -0.48
COL9A1-202ENST00000357250 NINJ2Q9NZG7 142 aa12.05□□□□□ -0.48
COL9A1-202ENST00000357250 DDX20Q9UHI6 824 aaKnown RBP12.05□□□□□ -0.48
COL9A1-202ENST00000357250 ENOPH1Q9UHY7 261 aa12.05□□□□□ -0.48
COL9A1-202ENST00000357250 TMEM114B3SHH9 223 aa12.05□□□□□ -0.48
COL9A1-202ENST00000357250 CYP1A1P04798 512 aaPredicted RBP12.05□□□□□ -0.48
COL9A1-202ENST00000357250 PYGMP11217 842 aa12.05□□□□□ -0.48
COL9A1-202ENST00000357250 MLNP12872 115 aa12.05□□□□□ -0.48
COL9A1-202ENST00000357250 RRM2P31350 389 aa12.05□□□□□ -0.48
COL9A1-202ENST00000357250 IL17AQ16552 155 aa12.05□□□□□ -0.48
COL9A1-202ENST00000357250 ATP6AP1LQ52LC2 224 aa12.05□□□□□ -0.48
COL9A1-202ENST00000357250 MAP1SQ66K74 1059 aaPredicted RBP12.05□□□□□ -0.48
COL9A1-202ENST00000357250 CENPLQ8N0S6 344 aaPredicted RBP12.05□□□□□ -0.48
COL9A1-202ENST00000357250 TMEM86AQ8N2M4 240 aa12.05□□□□□ -0.48
COL9A1-202ENST00000357250 INPP5DQ92835 1189 aa12.05□□□□□ -0.48
COL9A1-202ENST00000357250 CAMKK2Q96RR4 588 aa12.05□□□□□ -0.48
COL9A1-202ENST00000357250 NMRAL1Q9HBL8 299 aa12.05□□□□□ -0.48
COL9A1-202ENST00000357250 TMCC3Q9ULS5 477 aa12.05□□□□□ -0.48
COL9A1-202ENST00000357250 SYNDIG1LA6NDD5 238 aa12.04□□□□□ -0.48
COL9A1-202ENST00000357250 EIF4E1BA6NMX2 242 aaKnown RBP12.04□□□□□ -0.48
COL9A1-202ENST00000357250 INSRRP14616 1297 aa12.04□□□□□ -0.48
COL9A1-202ENST00000357250 VCLP18206 1134 aa12.04□□□□□ -0.48
COL9A1-202ENST00000357250 SERPINB5P36952 375 aa12.04□□□□□ -0.48
COL9A1-202ENST00000357250 PSMD7P51665 324 aa12.04□□□□□ -0.48
COL9A1-202ENST00000357250 NDST1P52848 882 aa12.04□□□□□ -0.48
COL9A1-202ENST00000357250 CCDC85BQ15834 202 aaPredicted RBP12.04□□□□□ -0.48
COL9A1-202ENST00000357250 SGO1Q5FBB7 561 aa12.04□□□□□ -0.48
COL9A1-202ENST00000357250 YTHDF3Q7Z739 585 aaKnown RBP12.04□□□□□ -0.48
COL9A1-202ENST00000357250 KIAA2013Q8IYS2 634 aa12.04□□□□□ -0.48
COL9A1-202ENST00000357250 EMC1Q8N766 993 aa12.04□□□□□ -0.48
COL9A1-202ENST00000357250 OSCP1Q8WVF1 389 aa12.04□□□□□ -0.48
COL9A1-202ENST00000357250 EXOSC4Q9NPD3 245 aaKnown RBP12.04□□□□□ -0.48
COL9A1-202ENST00000357250 PRDM5Q9NQX1 630 aaPredicted RBP12.04□□□□□ -0.48
COL9A1-202ENST00000357250 GPATCH2LQ9NWQ4 482 aa12.04□□□□□ -0.48
COL9A1-202ENST00000357250 BGNP21810 368 aa12.04□□□□□ -0.48
COL9A1-202ENST00000357250 HNRNPH3P31942 346 aaKnown RBP12.04□□□□□ -0.48
COL9A1-202ENST00000357250 SOAT1P35610 550 aa12.04□□□□□ -0.48
COL9A1-202ENST00000357250 SLC6A3Q01959 620 aa12.04□□□□□ -0.48
COL9A1-202ENST00000357250 CCDC92Q53HC0 331 aaPredicted RBP12.04□□□□□ -0.48
COL9A1-202ENST00000357250 CYP4Z1Q86W10 505 aa12.04□□□□□ -0.48
COL9A1-202ENST00000357250 FBXO16Q8IX29 292 aaPredicted RBP12.04□□□□□ -0.48
COL9A1-202ENST00000357250 SMARCD1Q96GM5 515 aa12.04□□□□□ -0.48
COL9A1-202ENST00000357250 BTBD10Q9BSF8 475 aa12.04□□□□□ -0.48
COL9A1-202ENST00000357250 PDGFDQ9GZP0 370 aaPredicted RBP12.04□□□□□ -0.48
COL9A1-202ENST00000357250 ELOVL4Q9GZR5 314 aa12.04□□□□□ -0.48
COL9A1-202ENST00000357250 RBM22Q9NW64 420 aaKnown RBP eCLIP12.04□□□□□ -0.48
COL9A1-202ENST00000357250 UMODL1Q5DID0 1318 aa12.04□□□□□ -0.48
COL9A1-202ENST00000357250 MAP2K7O14733 419 aa12.04□□□□□ -0.48
COL9A1-202ENST00000357250 PLA2G6O60733 806 aa12.04□□□□□ -0.48
COL9A1-202ENST00000357250 NPM3O75607 178 aaKnown RBP12.04□□□□□ -0.48
COL9A1-202ENST00000357250 ABHD2P08910 425 aa12.04□□□□□ -0.48
COL9A1-202ENST00000357250 MYL4P12829 197 aa12.04□□□□□ -0.48
COL9A1-202ENST00000357250 PECAM1P16284 738 aaPredicted RBP12.04□□□□□ -0.48
COL9A1-202ENST00000357250 ZNF23P17027 643 aa12.04□□□□□ -0.48
COL9A1-202ENST00000357250 MZF1P28698 734 aaPredicted RBP12.04□□□□□ -0.48
COL9A1-202ENST00000357250 KRT20P35900 424 aa12.04□□□□□ -0.48
COL9A1-202ENST00000357250 SKIV2L2P42285 1042 aaKnown RBP12.04□□□□□ -0.48
COL9A1-202ENST00000357250 RANBP1P43487 201 aa12.04□□□□□ -0.48
COL9A1-202ENST00000357250 ARL4DP49703 201 aa12.04□□□□□ -0.48
COL9A1-202ENST00000357250 ERFP50548 548 aa12.04□□□□□ -0.48
COL9A1-202ENST00000357250 ORC1Q13415 861 aa12.04□□□□□ -0.48
COL9A1-202ENST00000357250 ARMC6Q6NXE6 501 aa12.04□□□□□ -0.48
COL9A1-202ENST00000357250 C1orf186Q6ZWK4 172 aa12.04□□□□□ -0.48
COL9A1-202ENST00000357250 ITIH5Q86UX2 942 aa12.04□□□□□ -0.48
COL9A1-202ENST00000357250 ARHGEF19Q8IW93 802 aa12.04□□□□□ -0.48
COL9A1-202ENST00000357250 ZNF786Q8N393 782 aa12.04□□□□□ -0.48
COL9A1-202ENST00000357250 ZNF398Q8TD17 642 aa12.04□□□□□ -0.48
COL9A1-202ENST00000357250 PPP1R13LQ8WUF5 828 aa12.04□□□□□ -0.48
COL9A1-202ENST00000357250 ABHD16BQ9H3Z7 469 aa12.04□□□□□ -0.48
COL9A1-202ENST00000357250 PCYOX1Q9UHG3 505 aa12.04□□□□□ -0.48
COL9A1-202ENST00000357250 NCANO14594 1321 aa12.04□□□□□ -0.48
COL9A1-202ENST00000357250 E2F8A0AVK6 867 aa12.03□□□□□ -0.48
COL9A1-202ENST00000357250 STK25O00506 426 aa12.03□□□□□ -0.48
COL9A1-202ENST00000357250 TFE3P19532 575 aaPredicted RBP12.03□□□□□ -0.48
COL9A1-202ENST00000357250 PIK3CGP48736 1102 aa12.03□□□□□ -0.48
COL9A1-202ENST00000357250 CNTN2Q02246 1040 aa12.03□□□□□ -0.48
COL9A1-202ENST00000357250 CRY2Q49AN0 593 aa12.03□□□□□ -0.48
COL9A1-202ENST00000357250 ZNF557Q8N988 423 aaPredicted RBP12.03□□□□□ -0.48
COL9A1-202ENST00000357250 DDHD1Q8NEL9 900 aa12.03□□□□□ -0.48
COL9A1-202ENST00000357250 ETNPPLQ8TBG4 499 aa12.03□□□□□ -0.48
COL9A1-202ENST00000357250 OTULINQ96BN8 352 aa12.03□□□□□ -0.48
COL9A1-202ENST00000357250 PPP1R10Q96QC0 940 aaKnown RBP12.03□□□□□ -0.48
COL9A1-202ENST00000357250 SLC12A8A0AV02 714 aa12.03□□□□□ -0.48
COL9A1-202ENST00000357250 DYTNA2CJ06 578 aa12.03□□□□□ -0.48
COL9A1-202ENST00000357250 TISP43B9A030 160 aa12.03□□□□□ -0.48
COL9A1-202ENST00000357250 XPO1O14980 1071 aaKnown RBP12.03□□□□□ -0.48
COL9A1-202ENST00000357250 ERBB2P04626 1255 aa12.03□□□□□ -0.48
COL9A1-202ENST00000357250 RHOAP61586 193 aa12.03□□□□□ -0.48
COL9A1-202ENST00000357250 GTF2BQ00403 316 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms