RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 OTUD1Q5VV17 481 aaPredicted RBP22.48■■□□□ 1.19
SHMT1-202ENST00000352886 SMG8Q8ND04 991 aaKnown RBP22.48■■□□□ 1.19
SHMT1-202ENST00000352886 ARMC2Q8NEN0 867 aa22.48■■□□□ 1.19
SHMT1-202ENST00000352886 DEPDC1BQ8WUY9 529 aa22.48■■□□□ 1.19
SHMT1-202ENST00000352886 MTBPQ96DY7 904 aa22.48■■□□□ 1.19
SHMT1-202ENST00000352886 TMEM120AQ9BXJ8 343 aa22.48■■□□□ 1.19
SHMT1-202ENST00000352886 EBF2Q9HAK2 575 aa22.48■■□□□ 1.19
SHMT1-202ENST00000352886 RCOR3Q9P2K3 495 aaPredicted RBP22.48■■□□□ 1.19
SHMT1-202ENST00000352886 MCM8Q9UJA3 840 aa22.48■■□□□ 1.19
SHMT1-202ENST00000352886 HMX2A2RU54 273 aa22.48■■□□□ 1.19
SHMT1-202ENST00000352886 DAB1O75553 588 aa22.48■■□□□ 1.19
SHMT1-202ENST00000352886 DLDP09622 509 aaKnown RBP22.48■■□□□ 1.19
SHMT1-202ENST00000352886 WARSP23381 471 aaKnown RBP22.48■■□□□ 1.19
SHMT1-202ENST00000352886 SARNPP82979 210 aaKnown RBP22.48■■□□□ 1.19
SHMT1-202ENST00000352886 BZW1Q7L1Q6 419 aaKnown RBP22.48■■□□□ 1.19
SHMT1-202ENST00000352886 TOP6BLQ8N6T0 577 aa22.48■■□□□ 1.19
SHMT1-202ENST00000352886 APBB2Q92870 758 aa22.48■■□□□ 1.19
SHMT1-202ENST00000352886 OXNAD1Q96HP4 312 aaPredicted RBP22.48■■□□□ 1.19
SHMT1-202ENST00000352886 SAR1AQ9NR31 198 aa22.48■■□□□ 1.19
SHMT1-202ENST00000352886 FLRT1Q9NZU1 646 aa22.48■■□□□ 1.19
SHMT1-202ENST00000352886 KLF11O14901 512 aa22.47■■□□□ 1.19
SHMT1-202ENST00000352886 NPR3P17342 541 aa22.47■■□□□ 1.19
SHMT1-202ENST00000352886 NDUFV1P49821 464 aa22.47■■□□□ 1.19
SHMT1-202ENST00000352886 AP1B1Q10567 949 aa22.47■■□□□ 1.19
SHMT1-202ENST00000352886 COLGALT1Q8NBJ5 622 aa22.47■■□□□ 1.19
SHMT1-202ENST00000352886 RNF139Q8WU17 664 aa22.47■■□□□ 1.19
SHMT1-202ENST00000352886 TSPAN18Q96SJ8 248 aa22.47■■□□□ 1.19
SHMT1-202ENST00000352886 PCMTD2Q9NV79 361 aa22.47■■□□□ 1.19
SHMT1-202ENST00000352886 WDR27A2RRH5 827 aa22.47■■□□□ 1.19
SHMT1-202ENST00000352886 TRAFD1O14545 582 aaPredicted RBP22.47■■□□□ 1.19
SHMT1-202ENST00000352886 ANP32DO95626 131 aa22.47■■□□□ 1.19
SHMT1-202ENST00000352886 MYL3P08590 195 aa22.47■■□□□ 1.19
SHMT1-202ENST00000352886 EPHB2P29323 1055 aa22.47■■□□□ 1.19
SHMT1-202ENST00000352886 SERPINB3P29508 390 aa22.47■■□□□ 1.19
SHMT1-202ENST00000352886 MAP2K2P36507 400 aa22.47■■□□□ 1.19
SHMT1-202ENST00000352886 FDFT1P37268 417 aa22.47■■□□□ 1.19
SHMT1-202ENST00000352886 PSEN1P49768 467 aa22.47■■□□□ 1.19
SHMT1-202ENST00000352886 CRADDP78560 199 aa22.47■■□□□ 1.19
SHMT1-202ENST00000352886 CASC4Q6P4E1 433 aa22.47■■□□□ 1.19
SHMT1-202ENST00000352886 PDCD7Q8N8D1 485 aaKnown RBP22.47■■□□□ 1.19
SHMT1-202ENST00000352886 CEP41Q9BYV8 373 aa22.47■■□□□ 1.19
SHMT1-202ENST00000352886 LRRC4Q9HBW1 653 aa22.47■■□□□ 1.19
SHMT1-202ENST00000352886 PIH1D1Q9NWS0 290 aaKnown RBP22.47■■□□□ 1.19
SHMT1-202ENST00000352886 MTO1Q9Y2Z2 717 aaKnown RBP22.47■■□□□ 1.19
SHMT1-202ENST00000352886 CENPFP49454 3210 aa22.47■■□□□ 1.19
SHMT1-202ENST00000352886 ZNF236Q9UL36 1845 aa22.47■■□□□ 1.19
SHMT1-202ENST00000352886 M0QYT0 321 aa22.46■■□□□ 1.19
SHMT1-202ENST00000352886 HAS3O00219 553 aa22.46■■□□□ 1.19
SHMT1-202ENST00000352886 CREB3O43889 395 aa22.46■■□□□ 1.19
SHMT1-202ENST00000352886 IL1BP01584 269 aa22.46■■□□□ 1.19
SHMT1-202ENST00000352886 PTPN1P18031 435 aaKnown RBP22.46■■□□□ 1.19
SHMT1-202ENST00000352886 NOS2P35228 1153 aa22.46■■□□□ 1.19
SHMT1-202ENST00000352886 BEX3Q00994 111 aa22.46■■□□□ 1.19
SHMT1-202ENST00000352886 NME3Q13232 169 aa22.46■■□□□ 1.19
SHMT1-202ENST00000352886 SYPL2Q5VXT5 272 aa22.46■■□□□ 1.19
SHMT1-202ENST00000352886 TWF2Q6IBS0 349 aaKnown RBP22.46■■□□□ 1.19
SHMT1-202ENST00000352886 PAQR9Q6ZVX9 377 aa22.46■■□□□ 1.19
SHMT1-202ENST00000352886 LONP2Q86WA8 852 aa22.46■■□□□ 1.19
SHMT1-202ENST00000352886 PSTKQ8IV42 348 aaKnown RBP22.46■■□□□ 1.19
SHMT1-202ENST00000352886 UNC5BQ8IZJ1 945 aa22.46■■□□□ 1.19
SHMT1-202ENST00000352886 P2RY11Q96G91 374 aa22.46■■□□□ 1.19
SHMT1-202ENST00000352886 FBXO6Q9NRD1 293 aaPredicted RBP22.46■■□□□ 1.19
SHMT1-202ENST00000352886 MKS1Q9NXB0 559 aa22.46■■□□□ 1.19
SHMT1-202ENST00000352886 MOCS1Q9NZB8 636 aa22.46■■□□□ 1.19
SHMT1-202ENST00000352886 CPA4Q9UI42 421 aa22.46■■□□□ 1.19
SHMT1-202ENST00000352886 C2orf71A6NGG8 1288 aa22.46■■□□□ 1.19
SHMT1-202ENST00000352886 RNF103O00237 685 aa22.46■■□□□ 1.19
SHMT1-202ENST00000352886 CYB561D2O14569 222 aa22.46■■□□□ 1.19
SHMT1-202ENST00000352886 HAUS5O94927 633 aa22.46■■□□□ 1.19
SHMT1-202ENST00000352886 ZNF865P0CJ78 1059 aaPredicted RBP22.46■■□□□ 1.19
SHMT1-202ENST00000352886 CRYBB1P53674 252 aaPredicted RBP22.46■■□□□ 1.19
SHMT1-202ENST00000352886 CDK16Q00536 496 aa22.46■■□□□ 1.19
SHMT1-202ENST00000352886 SPRYD7Q5W111 196 aa22.46■■□□□ 1.19
SHMT1-202ENST00000352886 WSCD1Q658N2 575 aa22.46■■□□□ 1.19
SHMT1-202ENST00000352886 HACE1Q8IYU2 909 aa22.46■■□□□ 1.19
SHMT1-202ENST00000352886 NDUFAF2Q8N183 169 aa22.46■■□□□ 1.19
SHMT1-202ENST00000352886 NT5C3BQ969T7 300 aa22.46■■□□□ 1.19
SHMT1-202ENST00000352886 ZFP42Q96MM3 310 aa22.46■■□□□ 1.19
SHMT1-202ENST00000352886 NPY6RQ99463 290 aa22.46■■□□□ 1.19
SHMT1-202ENST00000352886 NOP53Q9NZM5 478 aaKnown RBP22.46■■□□□ 1.19
SHMT1-202ENST00000352886 LNPEPQ9UIQ6 1025 aa22.46■■□□□ 1.19
SHMT1-202ENST00000352886 DNAH12Q6ZR08 3092 aa22.45■■□□□ 1.18
SHMT1-202ENST00000352886 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP22.45■■□□□ 1.18
SHMT1-202ENST00000352886 H3BRJ5 948 aa22.45■■□□□ 1.18
SHMT1-202ENST00000352886 WFS1O76024 890 aa22.45■■□□□ 1.18
SHMT1-202ENST00000352886 IGFBP6P24592 240 aaPredicted RBP22.45■■□□□ 1.18
SHMT1-202ENST00000352886 PTPN4P29074 926 aa22.45■■□□□ 1.18
SHMT1-202ENST00000352886 SERPINB9P50453 376 aa22.45■■□□□ 1.18
SHMT1-202ENST00000352886 ZBTB16Q05516 673 aa22.45■■□□□ 1.18
SHMT1-202ENST00000352886 CLEC20AQ6ZU45 233 aa22.45■■□□□ 1.18
SHMT1-202ENST00000352886 SIX6OS1Q8N1H7 587 aa22.45■■□□□ 1.18
SHMT1-202ENST00000352886 FAM13CQ8NE31 585 aa22.45■■□□□ 1.18
SHMT1-202ENST00000352886 FBXO41Q8TF61 875 aa22.45■■□□□ 1.18
SHMT1-202ENST00000352886 SKA1Q96BD8 255 aa22.45■■□□□ 1.18
SHMT1-202ENST00000352886 SEPT10Q9P0V9 454 aa22.45■■□□□ 1.18
SHMT1-202ENST00000352886 STAP1Q9ULZ2 295 aa22.45■■□□□ 1.18
SHMT1-202ENST00000352886 TSC2P49815 1807 aa22.45■■□□□ 1.18
SHMT1-202ENST00000352886 I3L4J1 428 aa22.45■■□□□ 1.18
SHMT1-202ENST00000352886 PTGESO14684 152 aa22.45■■□□□ 1.18
SHMT1-202ENST00000352886 STK10O94804 968 aaKnown RBP22.45■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms