RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 HPCAP84074 193 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 C12orf29Q8N999 325 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 GFM2Q969S9 779 aaKnown RBP10.44□□□□□ -0.74
CHD3-201ENST00000330494 ATP13A1Q9HD20 1204 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 CAMTA1Q9Y6Y1 1673 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 EVPLLA8MZ36 301 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 NT5C1B-RDH14C9J2C7 533 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 B4GALT5O43286 388 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 CCNT2O60583 730 aaKnown RBP10.44□□□□□ -0.74
CHD3-201ENST00000330494 MAPTP10636 758 aaKnown RBP10.44□□□□□ -0.74
CHD3-201ENST00000330494 IGFBP4P22692 258 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 C1QBPQ07021 282 aaKnown RBP10.44□□□□□ -0.74
CHD3-201ENST00000330494 KLC1Q07866 573 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 TRIM60Q495X7 471 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 CCDC81Q6ZN84 652 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 ARMCX6Q7L4S7 300 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 DET1Q7L5Y6 550 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 GPR142Q7Z601 462 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 TMCO5AQ8N6Q1 288 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 OR9Q1Q8NGQ5 310 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 HELQQ8TDG4 1101 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 SLC35C1Q96A29 364 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 BUD23O43709 281 aaKnown RBP10.44□□□□□ -0.74
CHD3-201ENST00000330494 RNASEH1O60930 286 aaKnown RBP10.44□□□□□ -0.74
CHD3-201ENST00000330494 PSMD10O75832 226 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 PIAS1O75925 651 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 CRTAMO95727 393 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 HNRNPH1P31943 449 aaKnown RBP10.44□□□□□ -0.74
CHD3-201ENST00000330494 AQP5P55064 265 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 CCNG2Q16589 344 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 TEX9Q8N6V9 391 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 CATSPER2Q96P56 530 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 PIK3CDO00329 1044 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 OAZ1P54368 228 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 HDAC4P56524 1084 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 ACOX1Q15067 660 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 IQSEC1Q6DN90 963 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 AGGF1Q8N302 714 aaeCLIP10.44□□□□□ -0.74
CHD3-201ENST00000330494 C10orf53Q8N6V4 93 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 SPATA20Q8TB22 786 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 KCNK16Q96T55 309 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 DMAP1Q9NPF5 467 aaPredicted RBP10.44□□□□□ -0.74
CHD3-201ENST00000330494 KANSL3Q9P2N6 904 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 CTNNAL1Q9UBT7 734 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 DDX5P17844 614 aaKnown RBP10.44□□□□□ -0.74
CHD3-201ENST00000330494 GPC1P35052 558 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 ALDH9A1P49189 494 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 COPAP53621 1224 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 YWHAZP63104 245 aaKnown RBP10.44□□□□□ -0.74
CHD3-201ENST00000330494 PPIL2Q13356 520 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 BOP1Q14137 746 aaKnown RBP10.44□□□□□ -0.74
CHD3-201ENST00000330494 TRMT11Q7Z4G4 463 aaKnown RBP10.44□□□□□ -0.74
CHD3-201ENST00000330494 OOSP2Q86WS3 158 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 BRSK2Q8IWQ3 736 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 UBE2OQ9C0C9 1292 aaKnown RBP10.44□□□□□ -0.74
CHD3-201ENST00000330494 SNX8Q9Y5X2 465 aa10.44□□□□□ -0.74
CHD3-201ENST00000330494 A0A0A6YYK5 440 aaPredicted RBP10.43□□□□□ -0.74
CHD3-201ENST00000330494 RNF103O00237 685 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 SPATA31D3P0C874 917 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 HSPA1AP0DMV8 641 aaKnown RBP10.43□□□□□ -0.74
CHD3-201ENST00000330494 HSPA1BP0DMV9 641 aaKnown RBP10.43□□□□□ -0.74
CHD3-201ENST00000330494 MLNP12872 115 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 SERPINB4P48594 390 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 PRIM2P49643 509 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 MRPL28Q13084 256 aaKnown RBP10.43□□□□□ -0.74
CHD3-201ENST00000330494 MTFR1Q15390 333 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 FIGNQ5HY92 759 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 SPATA31D4Q6ZUB0 917 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 SERAC1Q96JX3 654 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 ANKZF1Q9H8Y5 726 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 TBC1D23Q9NUY8 699 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 NAALADL1Q9UQQ1 740 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 DLG5Q8TDM6 1919 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 GNG14A0A1W2PPG7 69 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 MEI4A8MW99 385 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 SLC9A5Q14940 896 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 NIPA1Q7RTP0 329 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 GLT6D1Q7Z4J2 308 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 ITIH5Q86UX2 942 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 UCMAQ8WVF2 138 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 FAM163AQ96GL9 167 aaPredicted RBP10.43□□□□□ -0.74
CHD3-201ENST00000330494 FBXO44Q9H4M3 255 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 IFT172Q9UG01 1749 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 MAP3K13O43283 966 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 ALDH1A2O94788 518 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 NFE2Q16621 373 aaPredicted RBP10.43□□□□□ -0.74
CHD3-201ENST00000330494 FAM183BPQ6ZVS7 135 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 MTDHQ86UE4 582 aaKnown RBP10.43□□□□□ -0.74
CHD3-201ENST00000330494 FUT8Q9BYC5 575 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 ZMYM5Q9UJ78 669 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 EIF3LQ9Y262 564 aaKnown RBP10.43□□□□□ -0.74
CHD3-201ENST00000330494 NFASCO94856 1347 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 APOA1P02647 267 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 TRAF7Q6Q0C0 670 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 ZCCHC23Q6ZST2 131 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 NLRP9Q7RTR0 991 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 MAP4K3Q8IVH8 894 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 USP13Q92995 863 aaPredicted RBP10.43□□□□□ -0.74
CHD3-201ENST00000330494 TMEM120AQ9BXJ8 343 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 CHST7Q9NS84 486 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms