RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 CGRRF1Q99675 332 aa15.79■□□□□ 0.12
SHH-201ENST00000297261 ZC4H2Q9NQZ6 224 aa15.79■□□□□ 0.12
SHH-201ENST00000297261 ARHGEF3Q9NR81 526 aa15.79■□□□□ 0.12
SHH-201ENST00000297261 ATXN10Q9UBB4 475 aa15.79■□□□□ 0.12
SHH-201ENST00000297261 SMIM31A0A1B0GVY4 71 aa15.79■□□□□ 0.12
SHH-201ENST00000297261 UBA6A0AVT1 1052 aaPredicted RBP15.79■□□□□ 0.12
SHH-201ENST00000297261 ZNF23P17027 643 aa15.79■□□□□ 0.12
SHH-201ENST00000297261 TSPY1Q01534 308 aa15.79■□□□□ 0.12
SHH-201ENST00000297261 LIN52Q52LA3 116 aa15.79■□□□□ 0.12
SHH-201ENST00000297261 CELF3Q5SZQ8 465 aaKnown RBP15.79■□□□□ 0.12
SHH-201ENST00000297261 MFSD14CQ5VZR4 134 aa15.79■□□□□ 0.12
SHH-201ENST00000297261 LRRC8BQ6P9F7 803 aa15.79■□□□□ 0.12
SHH-201ENST00000297261 FAM43BQ6ZT52 329 aaPredicted RBP15.79■□□□□ 0.12
SHH-201ENST00000297261 SEPT3Q9UH03 358 aa15.79■□□□□ 0.12
SHH-201ENST00000297261 ADGRA3Q8IWK6 1321 aa15.79■□□□□ 0.12
SHH-201ENST00000297261 GLTPD2A6NH11 291 aa15.78■□□□□ 0.12
SHH-201ENST00000297261 FSCN2O14926 492 aa15.78■□□□□ 0.12
SHH-201ENST00000297261 ZNF862O60290 1169 aa15.78■□□□□ 0.12
SHH-201ENST00000297261 CLK1P49759 484 aaKnown RBP15.78■□□□□ 0.12
SHH-201ENST00000297261 KIZQ2M2Z5 673 aa15.78■□□□□ 0.12
SHH-201ENST00000297261 BOLA3Q53S33 107 aa15.78■□□□□ 0.12
SHH-201ENST00000297261 LPCAT4Q643R3 524 aa15.78■□□□□ 0.12
SHH-201ENST00000297261 DSTYKQ6XUX3 929 aa15.78■□□□□ 0.12
SHH-201ENST00000297261 CCDC81Q6ZN84 652 aa15.78■□□□□ 0.12
SHH-201ENST00000297261 ZNF398Q8TD17 642 aa15.78■□□□□ 0.12
SHH-201ENST00000297261 ELMO2Q96JJ3 720 aa15.78■□□□□ 0.12
SHH-201ENST00000297261 ZNF570Q96NI8 536 aa15.78■□□□□ 0.12
SHH-201ENST00000297261 UNKQ9C0B0 810 aaKnown RBP15.78■□□□□ 0.12
SHH-201ENST00000297261 EBF2Q9HAK2 575 aa15.78■□□□□ 0.12
SHH-201ENST00000297261 CHKBQ9Y259 395 aa15.78■□□□□ 0.12
SHH-201ENST00000297261 SNX2O60749 519 aa15.78■□□□□ 0.12
SHH-201ENST00000297261 NEDD8Q15843 81 aa15.78■□□□□ 0.12
SHH-201ENST00000297261 NOL9Q5SY16 702 aaKnown RBP15.78■□□□□ 0.12
SHH-201ENST00000297261 NET1Q7Z628 596 aaPredicted RBP15.78■□□□□ 0.12
SHH-201ENST00000297261 CAMSAP3Q9P1Y5 1249 aaPredicted RBP15.78■□□□□ 0.12
SHH-201ENST00000297261 RPL26L1Q9UNX3 145 aaKnown RBP15.78■□□□□ 0.12
SHH-201ENST00000297261 PCDHA2Q9Y5H9 948 aa15.78■□□□□ 0.12
SHH-201ENST00000297261 FESP07332 822 aa15.78■□□□□ 0.12
SHH-201ENST00000297261 OCM2P0CE71 109 aa15.78■□□□□ 0.12
SHH-201ENST00000297261 OCMP0CE72 109 aaPredicted RBP15.78■□□□□ 0.12
SHH-201ENST00000297261 TGM2P21980 687 aa15.78■□□□□ 0.12
SHH-201ENST00000297261 AVPR1AP37288 418 aa15.78■□□□□ 0.12
SHH-201ENST00000297261 ALDH1A3P47895 512 aa15.78■□□□□ 0.12
SHH-201ENST00000297261 UBAP2LQ14157 1087 aaKnown RBP15.78■□□□□ 0.12
SHH-201ENST00000297261 GALNT15Q8N3T1 639 aa15.78■□□□□ 0.12
SHH-201ENST00000297261 APOL2Q9BQE5 337 aa15.78■□□□□ 0.12
SHH-201ENST00000297261 C3orf70A6NLC5 250 aaPredicted RBP15.78■□□□□ 0.12
SHH-201ENST00000297261 FARP2O94887 1054 aaPredicted RBP15.78■□□□□ 0.12
SHH-201ENST00000297261 IL18RAPO95256 599 aa15.78■□□□□ 0.12
SHH-201ENST00000297261 CTSHP09668 335 aa15.78■□□□□ 0.12
SHH-201ENST00000297261 GALK1P51570 392 aa15.78■□□□□ 0.12
SHH-201ENST00000297261 BBS5Q8N3I7 341 aa15.78■□□□□ 0.12
SHH-201ENST00000297261 STKLD1Q8NE28 680 aa15.78■□□□□ 0.12
SHH-201ENST00000297261 CPB2Q96IY4 423 aa15.78■□□□□ 0.12
SHH-201ENST00000297261 FAM84AQ96KN4 292 aa15.78■□□□□ 0.12
SHH-201ENST00000297261 MECRQ9BV79 373 aa15.78■□□□□ 0.12
SHH-201ENST00000297261 CYP4F12Q9HCS2 524 aa15.78■□□□□ 0.12
SHH-201ENST00000297261 R3HDM2Q9Y2K5 976 aaKnown RBP15.78■□□□□ 0.12
SHH-201ENST00000297261 ITGB3P05106 788 aa15.77■□□□□ 0.12
SHH-201ENST00000297261 SERPINE1P05121 402 aa15.77■□□□□ 0.12
SHH-201ENST00000297261 FGFR3P22607 806 aa15.77■□□□□ 0.12
SHH-201ENST00000297261 USP4Q13107 963 aa15.77■□□□□ 0.12
SHH-201ENST00000297261 UGP2Q16851 508 aa15.77■□□□□ 0.12
SHH-201ENST00000297261 LLGL2Q6P1M3 1020 aa15.77■□□□□ 0.12
SHH-201ENST00000297261 ZNF572Q7Z3I7 529 aaPredicted RBP15.77■□□□□ 0.12
SHH-201ENST00000297261 ZNF555Q8NEP9 628 aa15.77■□□□□ 0.12
SHH-201ENST00000297261 ZNF317Q96PQ6 595 aaPredicted RBP15.77■□□□□ 0.12
SHH-201ENST00000297261 BRD8Q9H0E9 1235 aa15.77■□□□□ 0.12
SHH-201ENST00000297261 SDR42E2A6NKP2 422 aa15.77■□□□□ 0.12
SHH-201ENST00000297261 DHX15O43143 795 aaKnown RBP15.77■□□□□ 0.12
SHH-201ENST00000297261 PLIN5Q00G26 463 aa15.77■□□□□ 0.12
SHH-201ENST00000297261 CCDC15Q0P6D6 951 aa15.77■□□□□ 0.12
SHH-201ENST00000297261 KYAT1Q16773 422 aa15.77■□□□□ 0.12
SHH-201ENST00000297261 HSDL1Q3SXM5 330 aa15.77■□□□□ 0.12
SHH-201ENST00000297261 HEATR4Q86WZ0 1026 aa15.77■□□□□ 0.12
SHH-201ENST00000297261 PIWIL2Q8TC59 973 aaKnown RBP15.77■□□□□ 0.12
SHH-201ENST00000297261 BSNDQ8WZ55 320 aa15.77■□□□□ 0.12
SHH-201ENST00000297261 USP18Q9UMW8 372 aa15.77■□□□□ 0.12
SHH-201ENST00000297261 MYRFQ9Y2G1 1151 aa15.77■□□□□ 0.12
SHH-201ENST00000297261 RPTORQ8N122 1335 aa15.77■□□□□ 0.12
SHH-201ENST00000297261 COL2A1P02458 1487 aaPredicted RBP15.77■□□□□ 0.11
SHH-201ENST00000297261 ZC3H11AO75152 810 aaKnown RBP eCLIP15.77■□□□□ 0.11
SHH-201ENST00000297261 PDGFRBP09619 1106 aa15.77■□□□□ 0.11
SHH-201ENST00000297261 CCDC159P0C7I6 412 aa15.77■□□□□ 0.11
SHH-201ENST00000297261 ME2P23368 584 aa15.77■□□□□ 0.11
SHH-201ENST00000297261 NFKBIAP25963 317 aa15.77■□□□□ 0.11
SHH-201ENST00000297261 C21orf59P57076 290 aa15.77■□□□□ 0.11
SHH-201ENST00000297261 RBP5P82980 135 aa15.77■□□□□ 0.11
SHH-201ENST00000297261 LBRQ14739 615 aaKnown RBP15.77■□□□□ 0.11
SHH-201ENST00000297261 TDRD5Q8NAT2 981 aaKnown RBP15.77■□□□□ 0.11
SHH-201ENST00000297261 ZNF112Q9UJU3 913 aa15.77■□□□□ 0.11
SHH-201ENST00000297261 PRR5-ARHGAP8B1AHC4 643 aa15.76■□□□□ 0.11
SHH-201ENST00000297261 NPTXRO95502 500 aa15.76■□□□□ 0.11
SHH-201ENST00000297261 NELFEP18615 380 aaKnown RBP15.76■□□□□ 0.11
SHH-201ENST00000297261 PSMA4P25789 261 aaKnown RBP15.76■□□□□ 0.11
SHH-201ENST00000297261 HMOX2P30519 316 aa15.76■□□□□ 0.11
SHH-201ENST00000297261 MYL6P60660 151 aa15.76■□□□□ 0.11
SHH-201ENST00000297261 ARHGAP8P85298 464 aa15.76■□□□□ 0.11
SHH-201ENST00000297261 CCDC85BQ15834 202 aaPredicted RBP15.76■□□□□ 0.11
SHH-201ENST00000297261 AGKQ53H12 422 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 106.9 ms