RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 KDM4CQ9H3R0 1056 aa13.37□□□□□ -0.27
SPTLC1-201ENST00000262554 ZC3H7BQ9UGR2 993 aaKnown RBP13.37□□□□□ -0.27
SPTLC1-201ENST00000262554 MFHAS1Q9Y4C4 1052 aa13.37□□□□□ -0.27
SPTLC1-201ENST00000262554 USP15Q9Y4E8 981 aaPredicted RBP13.37□□□□□ -0.27
SPTLC1-201ENST00000262554 A0A0A0MRY4 1105 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 ARHGEF37A1IGU5 675 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 CCT8L1PA6NM43 557 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 I3L4J1 428 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 CABYRO75952 493 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 FSBPO95073 299 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 ZWINTO95229 277 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 CPP00450 1065 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 CYP11A1P05108 521 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 INHBAP08476 426 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 NCAM1P13591 858 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 ELNP15502 786 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 RPA3P35244 121 aaPredicted RBP13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 ADRA1BP35368 520 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 FDFT1P37268 417 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 RABGGTBP53611 331 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 CACNA2D1P54289 1103 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 SCAPQ12770 1279 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 PDK1Q15118 436 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 KBTBD12Q3ZCT8 623 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 INTS6LQ5JSJ4 861 aaKnown RBP13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 FAM182AQ5T1J6 154 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 RFX8Q6ZV50 586 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 PDZD4Q76G19 769 aaPredicted RBP13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 EFCAB3Q8N7B9 438 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 SLC44A1Q8WWI5 657 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 CCT6BQ92526 530 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 MYLPFQ96A32 169 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 ALKBH8Q96BT7 664 aaKnown RBP13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 SPATA13Q96N96 652 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 CSNK1G1Q9HCP0 422 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 XAB2Q9HCS7 855 aaKnown RBP13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 TMPRSS4Q9NRS4 437 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 TRMT13Q9NUP7 481 aaKnown RBP13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 INPP5FQ9Y2H2 1132 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 SQORQ9Y6N5 450 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 TMEM88BA6NKF7 163 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 HHLA1C9JL84 531 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 TRDMT1O14717 391 aaKnown RBP13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 PPP1R12AO14974 1030 aaPredicted RBP13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 TYROBPO43914 113 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 ZNF189O75820 626 aaPredicted RBP13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 PIAS1O75925 651 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 SUN1O94901 812 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 F9P00740 461 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 OAS1P00973 400 aaKnown RBP13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 AP1B1Q10567 949 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 SEMA5AQ13591 1074 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 DPYSQ14117 519 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 PAFAH1B3Q15102 231 aaKnown RBP13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 PRKD1Q15139 912 aaPredicted RBP13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 SEPT7Q16181 437 aaKnown RBP13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 ARL13BQ3SXY8 428 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 PAN2Q504Q3 1202 aaKnown RBP13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 ANKRD20A2Q5SQ80 823 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 ANKRD20A1Q5TYW2 823 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 HHATQ5VTY9 493 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 ANKRD20A3Q5VUR7 823 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 FAM171BQ6P995 826 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 RNF180Q86T96 592 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 AGGF1Q8N302 714 aaeCLIP13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 ADAM32Q8TC27 787 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 MZB1Q8WU39 189 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 IRGQQ8WZA9 623 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 GRAMD1AQ96CP6 724 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 PGAP3Q96FM1 320 aaPredicted RBP13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 LGMNQ99538 433 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 RTP3Q9BQQ7 232 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 TMEM30AQ9NV96 361 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 FBXW11Q9UKB1 542 aa13.36□□□□□ -0.27
SPTLC1-201ENST00000262554 THSD7BQ9C0I4 1608 aa13.35□□□□□ -0.27
SPTLC1-201ENST00000262554 M0QZQ0 153 aa13.35□□□□□ -0.27
SPTLC1-201ENST00000262554 OPHN1O60890 802 aa13.35□□□□□ -0.27
SPTLC1-201ENST00000262554 MT-ND3P03897 115 aa13.35□□□□□ -0.27
SPTLC1-201ENST00000262554 VAV1P15498 845 aa13.35□□□□□ -0.27
SPTLC1-201ENST00000262554 TAC1P20366 129 aa13.35□□□□□ -0.27
SPTLC1-201ENST00000262554 FOXN2P32314 431 aa13.35□□□□□ -0.27
SPTLC1-201ENST00000262554 MAGEA3P43357 314 aa13.35□□□□□ -0.27
SPTLC1-201ENST00000262554 BRCC3P46736 316 aa13.35□□□□□ -0.27
SPTLC1-201ENST00000262554 GLUD2P49448 558 aa13.35□□□□□ -0.27
SPTLC1-201ENST00000262554 CDK16Q00536 496 aa13.35□□□□□ -0.27
SPTLC1-201ENST00000262554 SP3Q02447 781 aa13.35□□□□□ -0.27
SPTLC1-201ENST00000262554 ACTN3Q08043 901 aaPredicted RBP13.35□□□□□ -0.27
SPTLC1-201ENST00000262554 SF3A3Q12874 501 aaKnown RBP eCLIP13.35□□□□□ -0.27
SPTLC1-201ENST00000262554 MAPRE1Q15691 268 aaKnown RBP13.35□□□□□ -0.27
SPTLC1-201ENST00000262554 ZKSCAN8Q15776 578 aaPredicted RBP13.35□□□□□ -0.27
SPTLC1-201ENST00000262554 TRIM71Q2Q1W2 868 aaKnown RBP13.35□□□□□ -0.27
SPTLC1-201ENST00000262554 LACTB2Q53H82 288 aaPredicted RBP13.35□□□□□ -0.27
SPTLC1-201ENST00000262554 DENND5BQ6ZUT9 1274 aa13.35□□□□□ -0.27
SPTLC1-201ENST00000262554 SPATA21Q7Z572 469 aa13.35□□□□□ -0.27
SPTLC1-201ENST00000262554 ECHDC2Q86YB7 292 aa13.35□□□□□ -0.27
SPTLC1-201ENST00000262554 THEM5Q8N1Q8 247 aa13.35□□□□□ -0.27
SPTLC1-201ENST00000262554 PLCD4Q9BRC7 762 aa13.35□□□□□ -0.27
SPTLC1-201ENST00000262554 WDR6Q9NNW5 1121 aaKnown RBP13.35□□□□□ -0.27
SPTLC1-201ENST00000262554 DMAP1Q9NPF5 467 aaPredicted RBP13.35□□□□□ -0.27
SPTLC1-201ENST00000262554 DDIT4Q9NX09 232 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms