RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 DLGAP2Q9P1A6 1054 aa21.99■■□□□ 1.11
TRIM28-201ENST00000253024 CPSF2Q9P2I0 782 aaKnown RBP21.99■■□□□ 1.11
TRIM28-201ENST00000253024 KRT38O76015 456 aa21.99■■□□□ 1.11
TRIM28-201ENST00000253024 NCF2P19878 526 aaPredicted RBP21.99■■□□□ 1.11
TRIM28-201ENST00000253024 STX3Q13277 289 aa21.99■■□□□ 1.11
TRIM28-201ENST00000253024 RALGPS1Q5JS13 557 aa21.99■■□□□ 1.11
TRIM28-201ENST00000253024 MTHFD1LQ6UB35 978 aa21.99■■□□□ 1.11
TRIM28-201ENST00000253024 EBNA1BP2Q99848 306 aaKnown RBP21.99■■□□□ 1.11
TRIM28-201ENST00000253024 ADCY6O43306 1168 aa21.99■■□□□ 1.11
TRIM28-201ENST00000253024 ATP9BO43861 1147 aa21.99■■□□□ 1.11
TRIM28-201ENST00000253024 SULT1E1P49888 294 aa21.99■■□□□ 1.11
TRIM28-201ENST00000253024 TMEM154Q6P9G4 183 aa21.99■■□□□ 1.11
TRIM28-201ENST00000253024 KDELC2Q7Z4H8 507 aa21.99■■□□□ 1.11
TRIM28-201ENST00000253024 GSDMBQ8TAX9 411 aa21.99■■□□□ 1.11
TRIM28-201ENST00000253024 SLC35F5Q8WV83 523 aa21.99■■□□□ 1.11
TRIM28-201ENST00000253024 CDCA5Q96FF9 252 aa21.99■■□□□ 1.11
TRIM28-201ENST00000253024 FAXDC2Q96IV6 333 aa21.99■■□□□ 1.11
TRIM28-201ENST00000253024 MPHOSPH6Q99547 160 aaKnown RBP21.99■■□□□ 1.11
TRIM28-201ENST00000253024 ASB7Q9H672 318 aa21.99■■□□□ 1.11
TRIM28-201ENST00000253024 RECQL4O94761 1208 aa21.98■■□□□ 1.11
TRIM28-201ENST00000253024 TKTP29401 623 aaKnown RBP21.98■■□□□ 1.11
TRIM28-201ENST00000253024 TNFAIP2Q03169 654 aa21.98■■□□□ 1.11
TRIM28-201ENST00000253024 GRIK4Q16099 956 aa21.98■■□□□ 1.11
TRIM28-201ENST00000253024 NOL9Q5SY16 702 aaKnown RBP21.98■■□□□ 1.11
TRIM28-201ENST00000253024 HFE2Q6ZVN8 426 aa21.98■■□□□ 1.11
TRIM28-201ENST00000253024 CYP3A43Q9HB55 503 aa21.98■■□□□ 1.11
TRIM28-201ENST00000253024 MTMR10Q9NXD2 777 aa21.98■■□□□ 1.11
TRIM28-201ENST00000253024 GAS2O43903 313 aaKnown RBP21.98■■□□□ 1.11
TRIM28-201ENST00000253024 ZCCHC18P0CG32 403 aa21.98■■□□□ 1.11
TRIM28-201ENST00000253024 IFRD2Q12894 506 aaPredicted RBP21.98■■□□□ 1.11
TRIM28-201ENST00000253024 USP4Q13107 963 aa21.98■■□□□ 1.11
TRIM28-201ENST00000253024 FAM219BQ5XKK7 198 aa21.98■■□□□ 1.11
TRIM28-201ENST00000253024 GSTCDQ8NEC7 633 aa21.98■■□□□ 1.11
TRIM28-201ENST00000253024 SYT15Q9BQS2 421 aa21.98■■□□□ 1.11
TRIM28-201ENST00000253024 DCLRE1BQ9H816 532 aa21.98■■□□□ 1.11
TRIM28-201ENST00000253024 SYBUQ9NX95 663 aa21.98■■□□□ 1.11
TRIM28-201ENST00000253024 A0A0G2JLL6 359 aaPredicted RBP21.97■■□□□ 1.11
TRIM28-201ENST00000253024 PSMG1O95456 288 aa21.97■■□□□ 1.11
TRIM28-201ENST00000253024 IREB2P48200 963 aaKnown RBP21.97■■□□□ 1.11
TRIM28-201ENST00000253024 SYPL2Q5VXT5 272 aa21.97■■□□□ 1.11
TRIM28-201ENST00000253024 PRRT2Q7Z6L0 340 aaPredicted RBP21.97■■□□□ 1.11
TRIM28-201ENST00000253024 KBTBD2Q8IY47 623 aa21.97■■□□□ 1.11
TRIM28-201ENST00000253024 PNPLA1Q8N8W4 532 aa21.97■■□□□ 1.11
TRIM28-201ENST00000253024 PHACTR1Q9C0D0 580 aa21.97■■□□□ 1.11
TRIM28-201ENST00000253024 SAR1AQ9NR31 198 aa21.97■■□□□ 1.11
TRIM28-201ENST00000253024 RNF103O00237 685 aa21.97■■□□□ 1.11
TRIM28-201ENST00000253024 SMNDC1O75940 238 aaKnown RBP eCLIP21.97■■□□□ 1.119e-8■■□□□ 14.2
TRIM28-201ENST00000253024 AMHP03971 560 aa21.97■■□□□ 1.11
TRIM28-201ENST00000253024 MSX2P35548 267 aaPredicted RBP21.97■■□□□ 1.11
TRIM28-201ENST00000253024 LGSNQ5TDP6 509 aa21.97■■□□□ 1.11
TRIM28-201ENST00000253024 C1orf146Q5VVC0 180 aa21.97■■□□□ 1.11
TRIM28-201ENST00000253024 NCBP2-AS2Q69YL0 99 aa21.97■■□□□ 1.11
TRIM28-201ENST00000253024 PID1Q7Z2X4 250 aa21.97■■□□□ 1.11
TRIM28-201ENST00000253024 C10orf107Q8IVU9 208 aa21.97■■□□□ 1.11
TRIM28-201ENST00000253024 SLC16A10Q8TF71 515 aa21.97■■□□□ 1.11
TRIM28-201ENST00000253024 HTR3CQ8WXA8 447 aa21.97■■□□□ 1.11
TRIM28-201ENST00000253024 PYDC1Q8WXC3 89 aa21.97■■□□□ 1.11
TRIM28-201ENST00000253024 ITGA11Q9UKX5 1188 aa21.97■■□□□ 1.11
TRIM28-201ENST00000253024 PIN4Q9Y237 131 aaKnown RBP21.97■■□□□ 1.11
TRIM28-201ENST00000253024 RGPD3A6NKT7 1758 aaPredicted RBP21.97■■□□□ 1.11
TRIM28-201ENST00000253024 RGPD4Q7Z3J3 1758 aa21.97■■□□□ 1.11
TRIM28-201ENST00000253024 NUP205Q92621 2012 aa21.97■■□□□ 1.11
TRIM28-201ENST00000253024 ANK1P16157 1881 aa21.97■■□□□ 1.11
TRIM28-201ENST00000253024 ALDOAP04075 364 aaKnown RBP21.96■■□□□ 1.11
TRIM28-201ENST00000253024 CCR10P46092 362 aa21.96■■□□□ 1.11
TRIM28-201ENST00000253024 PDK2Q15119 407 aa21.96■■□□□ 1.11
TRIM28-201ENST00000253024 SLC9A4Q6AI14 798 aa21.96■■□□□ 1.11
TRIM28-201ENST00000253024 MAB21L3Q8N8X9 362 aa21.96■■□□□ 1.11
TRIM28-201ENST00000253024 OR52K1Q8NGK4 314 aa21.96■■□□□ 1.11
TRIM28-201ENST00000253024 AGAP2Q99490 1192 aa21.96■■□□□ 1.11
TRIM28-201ENST00000253024 PPCSQ9HAB8 311 aa21.96■■□□□ 1.11
TRIM28-201ENST00000253024 XAB2Q9HCS7 855 aaKnown RBP21.96■■□□□ 1.11
TRIM28-201ENST00000253024 SSU72Q9NP77 194 aaKnown RBP21.96■■□□□ 1.11
TRIM28-201ENST00000253024 GOLGA8QA0A0J9YX86 632 aa21.96■■□□□ 1.11
TRIM28-201ENST00000253024 GOLGA8OA6NCC3 632 aa21.96■■□□□ 1.11
TRIM28-201ENST00000253024 GOLGA8NF8WBI6 632 aa21.96■■□□□ 1.11
TRIM28-201ENST00000253024 GNL1P36915 607 aaPredicted RBP21.96■■□□□ 1.11
TRIM28-201ENST00000253024 SLC8A3P57103 927 aa21.96■■□□□ 1.11
TRIM28-201ENST00000253024 PIDD1Q9HB75 910 aa21.96■■□□□ 1.11
TRIM28-201ENST00000253024 FAM72CH0Y354 149 aa21.96■■□□□ 1.11
TRIM28-201ENST00000253024 RARBP10826 455 aa21.96■■□□□ 1.11
TRIM28-201ENST00000253024 ATICP31939 592 aa21.96■■□□□ 1.11
TRIM28-201ENST00000253024 ARRB2P32121 409 aa21.96■■□□□ 1.11
TRIM28-201ENST00000253024 INCA1Q0VD86 236 aa21.96■■□□□ 1.11
TRIM28-201ENST00000253024 ITGA9Q13797 1035 aa21.96■■□□□ 1.11
TRIM28-201ENST00000253024 PDE1CQ14123 709 aaPredicted RBP21.96■■□□□ 1.11
TRIM28-201ENST00000253024 FAM72AQ5TYM5 149 aa21.96■■□□□ 1.11
TRIM28-201ENST00000253024 RNF220Q5VTB9 566 aa21.96■■□□□ 1.11
TRIM28-201ENST00000253024 FAM72DQ6L9T8 149 aa21.96■■□□□ 1.11
TRIM28-201ENST00000253024 LRRC74BQ6ZQY2 392 aa21.96■■□□□ 1.11
TRIM28-201ENST00000253024 RIPOR1Q6ZS17 1223 aa21.96■■□□□ 1.11
TRIM28-201ENST00000253024 CHSY1Q86X52 802 aa21.96■■□□□ 1.11
TRIM28-201ENST00000253024 FAM72BQ86X60 149 aa21.96■■□□□ 1.11
TRIM28-201ENST00000253024 USP33Q8TEY7 942 aa21.96■■□□□ 1.11
TRIM28-201ENST00000253024 ZNF778Q96MU6 729 aa21.96■■□□□ 1.11
TRIM28-201ENST00000253024 HBS1LQ9Y450 684 aaKnown RBP21.96■■□□□ 1.11
TRIM28-201ENST00000253024 RPS6KL1Q9Y6S9 549 aa21.96■■□□□ 1.11
TRIM28-201ENST00000253024 NEMP1O14524 444 aa21.95■■□□□ 1.1
TRIM28-201ENST00000253024 TGM2P21980 687 aa21.95■■□□□ 1.1
TRIM28-201ENST00000253024 TSNAXIP1Q2TAA8 658 aa21.95■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms