RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 AMHP03971 560 aa15.4■□□□□ 0.06
CCDC47-201ENST00000225726 PAFAH1B3Q15102 231 aaKnown RBP15.4■□□□□ 0.06
CCDC47-201ENST00000225726 KRT71Q3SY84 523 aa15.4■□□□□ 0.06
CCDC47-201ENST00000225726 SDHAF4Q5VUM1 108 aa15.4■□□□□ 0.06
CCDC47-201ENST00000225726 RSPO2Q6UXX9 243 aaPredicted RBP15.4■□□□□ 0.06
CCDC47-201ENST00000225726 NAT8LQ8N9F0 302 aa15.4■□□□□ 0.06
CCDC47-201ENST00000225726 TKTL2Q9H0I9 626 aa15.4■□□□□ 0.06
CCDC47-201ENST00000225726 COMMD8Q9NX08 183 aa15.4■□□□□ 0.06
CCDC47-201ENST00000225726 NINJ2Q9NZG7 142 aa15.4■□□□□ 0.06
CCDC47-201ENST00000225726 I6L893 689 aaPredicted RBP15.39■□□□□ 0.05
CCDC47-201ENST00000225726 USP41Q3LFD5 358 aa15.39■□□□□ 0.05
CCDC47-201ENST00000225726 BRMS1LQ5PSV4 323 aa15.39■□□□□ 0.05
CCDC47-201ENST00000225726 UBAP2Q5T6F2 1119 aaKnown RBP15.39■□□□□ 0.05
CCDC47-201ENST00000225726 RNF19BQ6ZMZ0 732 aa15.39■□□□□ 0.05
CCDC47-201ENST00000225726 DNAJC5GQ8N7S2 189 aa15.39■□□□□ 0.05
CCDC47-201ENST00000225726 RNF34Q969K3 372 aa15.39■□□□□ 0.05
CCDC47-201ENST00000225726 SPATA17Q96L03 361 aa15.39■□□□□ 0.05
CCDC47-201ENST00000225726 ARHGEF38Q9NXL2 777 aa15.39■□□□□ 0.05
CCDC47-201ENST00000225726 MFHAS1Q9Y4C4 1052 aa15.39■□□□□ 0.05
CCDC47-201ENST00000225726 KIAA0355O15063 1070 aa15.39■□□□□ 0.05
CCDC47-201ENST00000225726 DCLK1O15075 740 aa15.39■□□□□ 0.05
CCDC47-201ENST00000225726 MFSD11O43934 449 aa15.39■□□□□ 0.05
CCDC47-201ENST00000225726 EFCAB14O75071 495 aa15.39■□□□□ 0.05
CCDC47-201ENST00000225726 RTN3O95197 1032 aaPredicted RBP15.39■□□□□ 0.05
CCDC47-201ENST00000225726 TPI1P60174 286 aa15.39■□□□□ 0.05
CCDC47-201ENST00000225726 TERF2Q15554 542 aa15.39■□□□□ 0.05
CCDC47-201ENST00000225726 KCNT2Q6UVM3 1135 aa15.39■□□□□ 0.05
CCDC47-201ENST00000225726 RNF168Q8IYW5 571 aaPredicted RBP15.39■□□□□ 0.05
CCDC47-201ENST00000225726 TTC9BQ8N6N2 239 aa15.39■□□□□ 0.05
CCDC47-201ENST00000225726 ZNF689Q96CS4 500 aaPredicted RBP15.39■□□□□ 0.05
CCDC47-201ENST00000225726 IGSF21Q96ID5 467 aa15.39■□□□□ 0.05
CCDC47-201ENST00000225726 NMUR1Q9HB89 426 aa15.39■□□□□ 0.05
CCDC47-201ENST00000225726 FAM72CH0Y354 149 aa15.38■□□□□ 0.05
CCDC47-201ENST00000225726 MAP3K6O95382 1288 aa15.38■□□□□ 0.05
CCDC47-201ENST00000225726 VNN2O95498 520 aa15.38■□□□□ 0.05
CCDC47-201ENST00000225726 HAPLN1P10915 354 aaPredicted RBP15.38■□□□□ 0.05
CCDC47-201ENST00000225726 FAM72AQ5TYM5 149 aa15.38■□□□□ 0.05
CCDC47-201ENST00000225726 FAM72DQ6L9T8 149 aa15.38■□□□□ 0.05
CCDC47-201ENST00000225726 FAM72BQ86X60 149 aa15.38■□□□□ 0.05
CCDC47-201ENST00000225726 EXOC4Q96A65 974 aa15.38■□□□□ 0.05
CCDC47-201ENST00000225726 EPAS1Q99814 870 aa15.38■□□□□ 0.05
CCDC47-201ENST00000225726 OSBPL2Q9H1P3 480 aa15.38■□□□□ 0.05
CCDC47-201ENST00000225726 MTRRQ9UBK8 725 aa15.38■□□□□ 0.05
CCDC47-201ENST00000225726 RAD54BQ9Y620 910 aa15.38■□□□□ 0.05
CCDC47-201ENST00000225726 ZNF638Q14966 1978 aaKnown RBP15.38■□□□□ 0.05
CCDC47-201ENST00000225726 FAM92AA1XBS5 289 aa15.38■□□□□ 0.05
CCDC47-201ENST00000225726 TRIM43BA6NCK2 446 aa15.38■□□□□ 0.05
CCDC47-201ENST00000225726 MAGEA4P43358 317 aa15.38■□□□□ 0.05
CCDC47-201ENST00000225726 ANKRD22Q5VYY1 191 aa15.38■□□□□ 0.05
CCDC47-201ENST00000225726 MSANTD2Q6P1R3 559 aa15.38■□□□□ 0.05
CCDC47-201ENST00000225726 PRSS55Q6UWB4 352 aaPredicted RBP15.38■□□□□ 0.05
CCDC47-201ENST00000225726 CENPUQ71F23 418 aa15.38■□□□□ 0.05
CCDC47-201ENST00000225726 NECAB2Q7Z6G3 386 aa15.38■□□□□ 0.05
CCDC47-201ENST00000225726 TFB1MQ8WVM0 346 aaKnown RBP15.38■□□□□ 0.05
CCDC47-201ENST00000225726 TRIM43Q96BQ3 446 aaPredicted RBP15.38■□□□□ 0.05
CCDC47-201ENST00000225726 SAYSD1Q9NPB0 183 aa15.38■□□□□ 0.05
CCDC47-201ENST00000225726 BACE2Q9Y5Z0 518 aa15.38■□□□□ 0.05
CCDC47-201ENST00000225726 ANKRD65E5RJM6 399 aa15.38■□□□□ 0.05
CCDC47-201ENST00000225726 ZNF189O75820 626 aaPredicted RBP15.38■□□□□ 0.05
CCDC47-201ENST00000225726 PGFP49763 221 aa15.38■□□□□ 0.05
CCDC47-201ENST00000225726 HNRNPH2P55795 449 aaKnown RBP15.38■□□□□ 0.05
CCDC47-201ENST00000225726 BASP1P80723 227 aaKnown RBP15.38■□□□□ 0.05
CCDC47-201ENST00000225726 KCTD16Q68DU8 428 aa15.38■□□□□ 0.05
CCDC47-201ENST00000225726 PDZD4Q76G19 769 aaPredicted RBP15.38■□□□□ 0.05
CCDC47-201ENST00000225726 CASP10Q92851 521 aa15.38■□□□□ 0.05
CCDC47-201ENST00000225726 TTC25Q96NG3 672 aa15.38■□□□□ 0.05
CCDC47-201ENST00000225726 GCATO75600 419 aa15.37■□□□□ 0.05
CCDC47-201ENST00000225726 ACSL3O95573 720 aa15.37■□□□□ 0.05
CCDC47-201ENST00000225726 YWHAQP27348 245 aa15.37■□□□□ 0.05
CCDC47-201ENST00000225726 NRLP54845 237 aa15.37■□□□□ 0.05
CCDC47-201ENST00000225726 ARL4CP56559 192 aa15.37■□□□□ 0.05
CCDC47-201ENST00000225726 USP46P62068 366 aa15.37■□□□□ 0.05
CCDC47-201ENST00000225726 KYNUQ16719 465 aa15.37■□□□□ 0.05
CCDC47-201ENST00000225726 MGAT5BQ3V5L5 792 aa15.37■□□□□ 0.05
CCDC47-201ENST00000225726 STKLD1Q8NE28 680 aa15.37■□□□□ 0.05
CCDC47-201ENST00000225726 FBXO22Q8NEZ5 403 aa15.37■□□□□ 0.05
CCDC47-201ENST00000225726 SEPT5Q99719 369 aaPredicted RBP15.37■□□□□ 0.05
CCDC47-201ENST00000225726 VN1R3Q9BXE9 311 aa15.37■□□□□ 0.05
CCDC47-201ENST00000225726 ROPN1BQ9BZX4 212 aaPredicted RBP15.37■□□□□ 0.05
CCDC47-201ENST00000225726 CENPHQ9H3R5 247 aa15.37■□□□□ 0.05
CCDC47-201ENST00000225726 ROPN1Q9HAT0 212 aaPredicted RBP15.37■□□□□ 0.05
CCDC47-201ENST00000225726 PRDM5Q9NQX1 630 aaPredicted RBP15.37■□□□□ 0.05
CCDC47-201ENST00000225726 CHADO15335 359 aa15.37■□□□□ 0.05
CCDC47-201ENST00000225726 EIF3HO15372 352 aaKnown RBP eCLIP15.37■□□□□ 0.05
CCDC47-201ENST00000225726 ITGB8P26012 769 aa15.37■□□□□ 0.05
CCDC47-201ENST00000225726 RPL10AP62906 217 aaKnown RBP15.37■□□□□ 0.05
CCDC47-201ENST00000225726 PDK1Q15118 436 aa15.37■□□□□ 0.05
CCDC47-201ENST00000225726 PSMD5Q16401 504 aa15.37■□□□□ 0.05
CCDC47-201ENST00000225726 SLC8B1Q6J4K2 584 aa15.37■□□□□ 0.05
CCDC47-201ENST00000225726 DENND5BQ6ZUT9 1274 aa15.37■□□□□ 0.05
CCDC47-201ENST00000225726 SERPINB11Q96P15 392 aa15.37■□□□□ 0.05
CCDC47-201ENST00000225726 HAPLN3Q96S86 360 aa15.37■□□□□ 0.05
CCDC47-201ENST00000225726 RC3H2Q9HBD1 1191 aaKnown RBP15.37■□□□□ 0.05
CCDC47-201ENST00000225726 OSER1Q9NX31 292 aa15.37■□□□□ 0.05
CCDC47-201ENST00000225726 GMIPQ9P107 970 aa15.37■□□□□ 0.05
CCDC47-201ENST00000225726 OR12D3Q9UGF7 316 aa15.37■□□□□ 0.05
CCDC47-201ENST00000225726 SLC27A5Q9Y2P5 690 aa15.37■□□□□ 0.05
CCDC47-201ENST00000225726 CDY1Q9Y6F8 540 aa15.37■□□□□ 0.05
CCDC47-201ENST00000225726 C5orf60A6NFR6 353 aa15.37■□□□□ 0.05
CCDC47-201ENST00000225726 ABHD2P08910 425 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms