RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 STK32BQ9NY57 414 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 UBP1Q9NZI7 540 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 MEIS3P2A8K0S8 358 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 NOP56O00567 594 aaKnown RBP11.05□□□□□ -0.64
USP28-201ENST00000003302 OR6B1O95007 311 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 C22orf31O95567 290 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 GNAT1P11488 350 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 MGAT1P26572 445 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 L1CAMP32004 1257 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 TNFAIP1Q13829 316 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 HIC1Q14526 733 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 SFT2D3Q587I9 215 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 TEDDM1Q5T9Z0 273 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 IZUMO2Q6UXV1 221 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 HFE2Q6ZVN8 426 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 RPS27LQ71UM5 84 aaKnown RBP11.05□□□□□ -0.64
USP28-201ENST00000003302 NUDCD3Q8IVD9 361 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 C12orf42Q96LP6 360 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 RILPQ96NA2 401 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 KCTD15Q96SI1 283 aaPredicted RBP11.05□□□□□ -0.64
USP28-201ENST00000003302 NRDE2Q9H7Z3 1164 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 DNAJC16Q9Y2G8 782 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 A0A0G2JMZ2 1700 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 LRRC37A2A6NM11 1700 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 GOLGA8QA0A0J9YX86 632 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 GOLGA8OA6NCC3 632 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 GOLGA8NF8WBI6 632 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 MFSD11O43934 449 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 PRPSAP2O60256 369 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 TNNC2P02585 160 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 APOEP02649 317 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 LTFP02788 710 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 CYP2C8P10632 490 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 XRRA1Q6P2D8 792 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 CHSY1Q86X52 802 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 FNIP1Q8TF40 1166 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 ZNF419Q96HQ0 510 aaPredicted RBP11.05□□□□□ -0.64
USP28-201ENST00000003302 CDHR1Q96JP9 859 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 FOXP3Q9BZS1 431 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 ZNF518BQ9C0D4 1074 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 CPSF2Q9P2I0 782 aaKnown RBP11.05□□□□□ -0.64
USP28-201ENST00000003302 IKBKGQ9Y6K9 419 aa11.05□□□□□ -0.64
USP28-201ENST00000003302 HDCP19113 662 aa11.04□□□□□ -0.64
USP28-201ENST00000003302 PRKCHP24723 683 aa11.04□□□□□ -0.64
USP28-201ENST00000003302 MAGEA3P43357 314 aa11.04□□□□□ -0.64
USP28-201ENST00000003302 GABRB2P47870 512 aa11.04□□□□□ -0.64
USP28-201ENST00000003302 PCLAFQ15004 111 aa11.04□□□□□ -0.64
USP28-201ENST00000003302 FASTKD1Q53R41 847 aaKnown RBP11.04□□□□□ -0.64
USP28-201ENST00000003302 N4BP2L1Q5TBK1 243 aaPredicted RBP11.04□□□□□ -0.64
USP28-201ENST00000003302 OTUD1Q5VV17 481 aaPredicted RBP11.04□□□□□ -0.64
USP28-201ENST00000003302 FRMD7Q6ZUT3 714 aa11.04□□□□□ -0.64
USP28-201ENST00000003302 STKLD1Q8NE28 680 aa11.04□□□□□ -0.64
USP28-201ENST00000003302 PIM2Q9P1W9 311 aa11.04□□□□□ -0.64
USP28-201ENST00000003302 OSBPP22059 807 aa11.04□□□□□ -0.64
USP28-201ENST00000003302 ACAT1P24752 427 aaKnown RBP11.04□□□□□ -0.64
USP28-201ENST00000003302 WASHC2DQ5SRD0 308 aa11.04□□□□□ -0.64
USP28-201ENST00000003302 ZNF280DQ6N043 979 aa11.04□□□□□ -0.64
USP28-201ENST00000003302 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.04□□□□□ -0.64
USP28-201ENST00000003302 CNPY3Q9BT09 278 aa11.04□□□□□ -0.64
USP28-201ENST00000003302 RSAD1Q9HA92 442 aa11.04□□□□□ -0.64
USP28-201ENST00000003302 SAR1AQ9NR31 198 aa11.04□□□□□ -0.64
USP28-201ENST00000003302 NRBP2Q9NSY0 501 aa11.04□□□□□ -0.64
USP28-201ENST00000003302 PALM2-AKAP2B1ALY0 433 aaPredicted RBP11.04□□□□□ -0.64
USP28-201ENST00000003302 SNNO75324 88 aaPredicted RBP11.04□□□□□ -0.64
USP28-201ENST00000003302 PROCP04070 461 aa11.04□□□□□ -0.64
USP28-201ENST00000003302 RASSF2P50749 326 aa11.04□□□□□ -0.64
USP28-201ENST00000003302 SLC34A1Q06495 639 aa11.04□□□□□ -0.64
USP28-201ENST00000003302 MSLNQ13421 630 aaPredicted RBP11.04□□□□□ -0.64
USP28-201ENST00000003302 ZNF460Q14592 562 aa11.04□□□□□ -0.64
USP28-201ENST00000003302 CELF3Q5SZQ8 465 aaKnown RBP11.04□□□□□ -0.64
USP28-201ENST00000003302 TMEM198Q66K66 360 aa11.04□□□□□ -0.64
USP28-201ENST00000003302 MBLAC2Q68D91 279 aa11.04□□□□□ -0.64
USP28-201ENST00000003302 NCBP2-AS2Q69YL0 99 aa11.04□□□□□ -0.64
USP28-201ENST00000003302 CCDC62Q6P9F0 684 aa11.04□□□□□ -0.64
USP28-201ENST00000003302 SNTG2Q9NY99 539 aa11.04□□□□□ -0.64
USP28-201ENST00000003302 SEPT10Q9P0V9 454 aa11.04□□□□□ -0.64
USP28-201ENST00000003302 RBPJLQ9UBG7 517 aa11.04□□□□□ -0.64
USP28-201ENST00000003302 IQANK1A0A1B0GTG1 560 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 ZNF195O14628 629 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 BUD23O43709 281 aaKnown RBP11.03□□□□□ -0.64
USP28-201ENST00000003302 KIF1CO43896 1103 aaKnown RBP11.03□□□□□ -0.64
USP28-201ENST00000003302 CHRNGP07510 517 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 BPGMP07738 259 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 PEX2P28328 305 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 PKDCCQ504Y2 493 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 RABGAP1LQ5R372 815 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 SYPL2Q5VXT5 272 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 IER5Q5VY09 327 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 GATA6Q92908 595 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 WDR55Q9H6Y2 383 aaPredicted RBP11.03□□□□□ -0.64
USP28-201ENST00000003302 SYBUQ9NX95 663 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 AKT3Q9Y243 479 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 STX16-NPEPL1H3BU86 382 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 TXNP10599 105 aaKnown RBP11.03□□□□□ -0.64
USP28-201ENST00000003302 DLG1Q12959 904 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 ARMC3Q5W041 872 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 SLC9A4Q6AI14 798 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 SESTD1Q86VW0 696 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 TEKT4Q8WW24 435 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 CSPG4P5Q96PW8 444 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms