RNA–Protein interactions for RNA: ENST00000642137.1

LINC00339-213, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 222 nt, Biotype transcribed processed pseudogene, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-213ENST00000642137 NME3Q13232 169 aa12.81□□□□□ -0.36
LINC00339-213ENST00000642137 PPP2R5DQ14738 602 aa12.81□□□□□ -0.36
LINC00339-213ENST00000642137 SMAD2Q15796 467 aaKnown RBP12.81□□□□□ -0.36
LINC00339-213ENST00000642137 HADHQ16836 314 aaKnown RBP12.81□□□□□ -0.36
LINC00339-213ENST00000642137 BRMS1LQ5PSV4 323 aa12.81□□□□□ -0.36
LINC00339-213ENST00000642137 OTOP3Q7RTS5 596 aa12.81□□□□□ -0.36
LINC00339-213ENST00000642137 DAAM2Q86T65 1068 aa12.81□□□□□ -0.36
LINC00339-213ENST00000642137 DDX42Q86XP3 938 aaKnown RBP eCLIP12.81□□□□□ -0.36
LINC00339-213ENST00000642137 CELF5Q8N6W0 485 aaKnown RBP12.81□□□□□ -0.36
LINC00339-213ENST00000642137 KIAA1958Q8N8K9 716 aa12.81□□□□□ -0.36
LINC00339-213ENST00000642137 LRRC57Q8N9N7 239 aa12.81□□□□□ -0.36
LINC00339-213ENST00000642137 ZSCAN18Q8TBC5 510 aaPredicted RBP12.81□□□□□ -0.36
LINC00339-213ENST00000642137 SMARCD2Q92925 531 aa12.81□□□□□ -0.36
LINC00339-213ENST00000642137 USP13Q92995 863 aaPredicted RBP12.81□□□□□ -0.36
LINC00339-213ENST00000642137 E2F7Q96AV8 911 aa12.81□□□□□ -0.36
LINC00339-213ENST00000642137 ACSF2Q96CM8 615 aaPredicted RBP12.81□□□□□ -0.36
LINC00339-213ENST00000642137 ZFRQ96KR1 1074 aaKnown RBP12.81□□□□□ -0.36
LINC00339-213ENST00000642137 FCRL2Q96LA5 508 aaPredicted RBP12.81□□□□□ -0.36
LINC00339-213ENST00000642137 ASB16Q96NS5 453 aa12.81□□□□□ -0.36
LINC00339-213ENST00000642137 MYADMQ96S97 322 aa12.81□□□□□ -0.36
LINC00339-213ENST00000642137 DCLK3Q9C098 648 aa12.81□□□□□ -0.36
LINC00339-213ENST00000642137 KIF9Q9HAQ2 790 aa12.81□□□□□ -0.36
LINC00339-213ENST00000642137 PIGVQ9NUD9 493 aa12.81□□□□□ -0.36
LINC00339-213ENST00000642137 ARHGEF38Q9NXL2 777 aa12.81□□□□□ -0.36
LINC00339-213ENST00000642137 OBP2AQ9NY56 170 aa12.81□□□□□ -0.36
LINC00339-213ENST00000642137 SLC12A6Q9UHW9 1150 aa12.81□□□□□ -0.36
LINC00339-213ENST00000642137 FAM50BQ9Y247 325 aa12.81□□□□□ -0.36
LINC00339-213ENST00000642137 NUP210Q8TEM1 1887 aaPredicted RBP12.8□□□□□ -0.36
LINC00339-213ENST00000642137 SYNJ2BP-COX16A0A087WUM0 186 aa12.8□□□□□ -0.36
LINC00339-213ENST00000642137 GRID2IPA4D2P6 1211 aa12.8□□□□□ -0.36
LINC00339-213ENST00000642137 TMEM110-MUSTN1A8MSY1 372 aa12.8□□□□□ -0.36
LINC00339-213ENST00000642137 KCNU1A8MYU2 1149 aa12.8□□□□□ -0.36
LINC00339-213ENST00000642137 LEFTY2O00292 366 aa12.8□□□□□ -0.36
LINC00339-213ENST00000642137 MSI1O43347 362 aaKnown RBP12.8□□□□□ -0.36
LINC00339-213ENST00000642137 LRCH4O75427 683 aa12.8□□□□□ -0.36
LINC00339-213ENST00000642137 PALMO75781 387 aa12.8□□□□□ -0.36
LINC00339-213ENST00000642137 STC2O76061 302 aa12.8□□□□□ -0.36
LINC00339-213ENST00000642137 COMTP21964 271 aa12.8□□□□□ -0.36
LINC00339-213ENST00000642137 MIPP30301 263 aa12.8□□□□□ -0.36
LINC00339-213ENST00000642137 GBP2P32456 591 aaPredicted RBP12.8□□□□□ -0.36
LINC00339-213ENST00000642137 ADRA1BP35368 520 aa12.8□□□□□ -0.36
LINC00339-213ENST00000642137 ATXN1P54253 815 aaKnown RBP12.8□□□□□ -0.36
LINC00339-213ENST00000642137 ZXDBP98169 803 aa12.8□□□□□ -0.36
LINC00339-213ENST00000642137 ARL13BQ3SXY8 428 aa12.8□□□□□ -0.36
LINC00339-213ENST00000642137 RAB6CQ53S08 254 aa12.8□□□□□ -0.36
LINC00339-213ENST00000642137 BOLA3Q53S33 107 aa12.8□□□□□ -0.36
LINC00339-213ENST00000642137 ZC3H12AQ5D1E8 599 aaKnown RBP12.8□□□□□ -0.36
LINC00339-213ENST00000642137 FAM78AQ5JUQ0 283 aa12.8□□□□□ -0.36
LINC00339-213ENST00000642137 ACBD5Q5T8D3 534 aaPredicted RBP12.8□□□□□ -0.36
LINC00339-213ENST00000642137 NUGGCQ68CJ6 796 aa12.8□□□□□ -0.36
LINC00339-213ENST00000642137 SCYL2Q6P3W7 929 aa12.8□□□□□ -0.36
LINC00339-213ENST00000642137 HTR3DQ70Z44 454 aa12.8□□□□□ -0.36
LINC00339-213ENST00000642137 ATP6V0D2Q8N8Y2 350 aa12.8□□□□□ -0.36
LINC00339-213ENST00000642137 TRIM58Q8NG06 486 aa12.8□□□□□ -0.36
LINC00339-213ENST00000642137 ADAMTS19Q8TE59 1207 aa12.8□□□□□ -0.36
LINC00339-213ENST00000642137 RNF34Q969K3 372 aa12.8□□□□□ -0.36
LINC00339-213ENST00000642137 NTAN1Q96AB6 310 aa12.8□□□□□ -0.36
LINC00339-213ENST00000642137 ALS2CR12Q96Q35 445 aa12.8□□□□□ -0.36
LINC00339-213ENST00000642137 PHF7Q9BWX1 381 aaPredicted RBP12.8□□□□□ -0.36
LINC00339-213ENST00000642137 RAB6CQ9H0N0 254 aa12.8□□□□□ -0.36
LINC00339-213ENST00000642137 COX16Q9P0S2 106 aa12.8□□□□□ -0.36
LINC00339-213ENST00000642137 EPS15L1Q9UBC2 864 aa12.8□□□□□ -0.36
LINC00339-213ENST00000642137 AMFRQ9UKV5 643 aa12.8□□□□□ -0.36
LINC00339-213ENST00000642137 USP18Q9UMW8 372 aa12.8□□□□□ -0.36
LINC00339-213ENST00000642137 ZNF510Q9Y2H8 683 aa12.8□□□□□ -0.36
LINC00339-213ENST00000642137 DOCK8Q8NF50 2099 aa12.8□□□□□ -0.36
LINC00339-213ENST00000642137 CDH23Q9H251 3354 aa12.8□□□□□ -0.36
LINC00339-213ENST00000642137 E2F8A0AVK6 867 aa12.79□□□□□ -0.36
LINC00339-213ENST00000642137 PRPSAP2O60256 369 aa12.79□□□□□ -0.36
LINC00339-213ENST00000642137 KIF5CO60282 957 aa12.79□□□□□ -0.36
LINC00339-213ENST00000642137 LATS1O95835 1130 aa12.79□□□□□ -0.36
LINC00339-213ENST00000642137 APOEP02649 317 aa12.79□□□□□ -0.36
LINC00339-213ENST00000642137 HMBSP08397 361 aa12.79□□□□□ -0.36
LINC00339-213ENST00000642137 HARS2P49590 506 aaKnown RBP12.79□□□□□ -0.36
LINC00339-213ENST00000642137 KCNQ1P51787 676 aa12.79□□□□□ -0.36
LINC00339-213ENST00000642137 ERMARDQ5T6L9 678 aa12.79□□□□□ -0.36
LINC00339-213ENST00000642137 LRRC38Q5VT99 294 aa12.79□□□□□ -0.36
LINC00339-213ENST00000642137 PTCRAQ6ISU1 281 aaPredicted RBP12.79□□□□□ -0.36
LINC00339-213ENST00000642137 NT5DC3Q86UY8 548 aa12.79□□□□□ -0.36
LINC00339-213ENST00000642137 FAM131BQ86XD5 332 aa12.79□□□□□ -0.36
LINC00339-213ENST00000642137 PSTKQ8IV42 348 aaKnown RBP12.79□□□□□ -0.36
LINC00339-213ENST00000642137 PLCD3Q8N3E9 789 aa12.79□□□□□ -0.36
LINC00339-213ENST00000642137 BTN2A3PQ96KV6 586 aa12.79□□□□□ -0.36
LINC00339-213ENST00000642137 HAPLN3Q96S86 360 aa12.79□□□□□ -0.36
LINC00339-213ENST00000642137 IRX2Q9BZI1 471 aaPredicted RBP12.79□□□□□ -0.36
LINC00339-213ENST00000642137 TKTL2Q9H0I9 626 aa12.79□□□□□ -0.36
LINC00339-213ENST00000642137 ZFP14Q9HCL3 533 aa12.79□□□□□ -0.36
LINC00339-213ENST00000642137 SMPD4Q9NXE4 827 aa12.79□□□□□ -0.36
LINC00339-213ENST00000642137 PCSK1NQ9UHG2 260 aa12.79□□□□□ -0.36
LINC00339-213ENST00000642137 LSM7Q9UK45 103 aaKnown RBP12.79□□□□□ -0.36
LINC00339-213ENST00000642137 FZD10Q9ULW2 581 aa12.79□□□□□ -0.36
LINC00339-213ENST00000642137 SH3BP1Q9Y3L3 701 aa12.79□□□□□ -0.36
LINC00339-213ENST00000642137 NR2E1Q9Y466 385 aa12.79□□□□□ -0.36
LINC00339-213ENST00000642137 CAPN6Q9Y6Q1 641 aa12.79□□□□□ -0.36
LINC00339-213ENST00000642137 HELZP42694 1942 aaKnown RBP12.79□□□□□ -0.36
LINC00339-213ENST00000642137 SPOPO43791 374 aa12.78□□□□□ -0.36
LINC00339-213ENST00000642137 ACSL4O60488 711 aa12.78□□□□□ -0.36
LINC00339-213ENST00000642137 GREM1O60565 184 aa12.78□□□□□ -0.36
LINC00339-213ENST00000642137 KRT7P08729 469 aa12.78□□□□□ -0.36
LINC00339-213ENST00000642137 MSNP26038 577 aaKnown RBP12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms