RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 VEPH1Q14D04 833 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 MGAT5BQ3V5L5 792 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 TMEM240Q5SV17 173 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 SNX30Q5VWJ9 437 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 KLHDC10Q6PID8 442 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 RNF19BQ6ZMZ0 732 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 PDZD4Q76G19 769 aaPredicted RBP10.97□□□□□ -0.65
CLN3-248ENST00000636355 ANKS1BQ7Z6G8 1248 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 CDKL3Q8IVW4 592 aaPredicted RBP10.97□□□□□ -0.65
CLN3-248ENST00000636355 CCDC185Q8N715 623 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 PLD5Q8N7P1 536 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 ATAD1Q8NBU5 361 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 SCAMP5Q8TAC9 235 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 FBXO32Q969P5 355 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 MYRFLQ96LU7 910 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 HAPLN3Q96S86 360 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 RAD9AQ99638 391 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 SEPT5Q99719 369 aaPredicted RBP10.97□□□□□ -0.65
CLN3-248ENST00000636355 FERMT1Q9BQL6 677 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 TRIM51Q9BSJ1 452 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 BRD8Q9H0E9 1235 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 ZBP1Q9H171 429 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 OSBPL2Q9H1P3 480 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 RXFP1Q9HBX9 757 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 MRPL17Q9NRX2 175 aaKnown RBP10.97□□□□□ -0.65
CLN3-248ENST00000636355 ZDHHC18Q9NUE0 388 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 ZNF446Q9NWS9 450 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 ARHGEF38Q9NXL2 777 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 DONSONQ9NYP3 566 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.97□□□□□ -0.65
CLN3-248ENST00000636355 GRHL1Q9NZI5 618 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 ASIC3Q9UHC3 531 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 DNPEPQ9ULA0 475 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 SHOC2Q9UQ13 582 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 NAALADL1Q9UQQ1 740 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 TLR6Q9Y2C9 796 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 IRAK3Q9Y616 596 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 ANAPC1Q9H1A4 1944 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 MTCL1Q9Y4B5 1905 aaKnown RBP10.97□□□□□ -0.65
CLN3-248ENST00000636355 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.96□□□□□ -0.65
CLN3-248ENST00000636355 ESYT3A0FGR9 886 aa10.96□□□□□ -0.65
CLN3-248ENST00000636355 BCLAF3A2AJT9 711 aaKnown RBP10.96□□□□□ -0.65
CLN3-248ENST00000636355 FGF10O15520 208 aaPredicted RBP10.96□□□□□ -0.65
CLN3-248ENST00000636355 DAPK3O43293 454 aa10.96□□□□□ -0.65
CLN3-248ENST00000636355 ZMYND10O75800 440 aa10.96□□□□□ -0.65
CLN3-248ENST00000636355 SEC31AO94979 1220 aaKnown RBP10.96□□□□□ -0.65
CLN3-248ENST00000636355 LINC00271P0C7V0 271 aa10.96□□□□□ -0.65
CLN3-248ENST00000636355 ACRP10323 421 aa10.96□□□□□ -0.65
CLN3-248ENST00000636355 CTSAP10619 480 aa10.96□□□□□ -0.65
CLN3-248ENST00000636355 EN2P19622 333 aaPredicted RBP10.96□□□□□ -0.65
CLN3-248ENST00000636355 IL4RP24394 825 aa10.96□□□□□ -0.65
CLN3-248ENST00000636355 OR1D2P34982 312 aa10.96□□□□□ -0.65
CLN3-248ENST00000636355 HSPA9P38646 679 aaKnown RBP10.96□□□□□ -0.65
CLN3-248ENST00000636355 RPL21P46778 160 aaKnown RBP10.96□□□□□ -0.65
CLN3-248ENST00000636355 RING1Q06587 406 aa10.96□□□□□ -0.65
CLN3-248ENST00000636355 ADCY2Q08462 1091 aa10.96□□□□□ -0.65
CLN3-248ENST00000636355 NME3Q13232 169 aa10.96□□□□□ -0.65
CLN3-248ENST00000636355 DPYSQ14117 519 aa10.96□□□□□ -0.65
CLN3-248ENST00000636355 CASP8Q14790 479 aa10.96□□□□□ -0.65
CLN3-248ENST00000636355 ZC3H12AQ5D1E8 599 aaKnown RBP10.96□□□□□ -0.65
CLN3-248ENST00000636355 PPP6R3Q5H9R7 873 aaPredicted RBP10.96□□□□□ -0.65
CLN3-248ENST00000636355 PRSS55Q6UWB4 352 aaPredicted RBP10.96□□□□□ -0.65
CLN3-248ENST00000636355 RSPO2Q6UXX9 243 aaPredicted RBP10.96□□□□□ -0.65
CLN3-248ENST00000636355 C16orf59Q7L2K0 433 aa10.96□□□□□ -0.65
CLN3-248ENST00000636355 OTOP2Q7RTS6 562 aa10.96□□□□□ -0.65
CLN3-248ENST00000636355 PCGF5Q86SE9 256 aa10.96□□□□□ -0.65
CLN3-248ENST00000636355 SCD5Q86SK9 330 aa10.96□□□□□ -0.65
CLN3-248ENST00000636355 HERC6Q8IVU3 1022 aa10.96□□□□□ -0.65
CLN3-248ENST00000636355 TCEAL8Q8IYN2 117 aa10.96□□□□□ -0.65
CLN3-248ENST00000636355 PQLC3Q8N755 202 aa10.96□□□□□ -0.65
CLN3-248ENST00000636355 PCDH19Q8TAB3 1148 aa10.96□□□□□ -0.65
CLN3-248ENST00000636355 BADQ92934 168 aa10.96□□□□□ -0.65
CLN3-248ENST00000636355 B3GALT6Q96L58 329 aa10.96□□□□□ -0.65
CLN3-248ENST00000636355 PGLYRP2Q96PD5 576 aa10.96□□□□□ -0.65
CLN3-248ENST00000636355 KCTD15Q96SI1 283 aaPredicted RBP10.96□□□□□ -0.65
CLN3-248ENST00000636355 CLSTN3Q9BQT9 956 aa10.96□□□□□ -0.65
CLN3-248ENST00000636355 UBE2OQ9C0C9 1292 aaKnown RBP10.96□□□□□ -0.65
CLN3-248ENST00000636355 RETREG1Q9H6L5 497 aa10.96□□□□□ -0.65
CLN3-248ENST00000636355 WDCPQ9H6R7 721 aa10.96□□□□□ -0.65
CLN3-248ENST00000636355 ARHGEF4Q9NR80 690 aa10.96□□□□□ -0.65
CLN3-248ENST00000636355 CALCOCO1Q9P1Z2 691 aa10.96□□□□□ -0.65
CLN3-248ENST00000636355 UXTQ9UBK9 157 aaPredicted RBP10.96□□□□□ -0.65
CLN3-248ENST00000636355 NFU1Q9UMS0 254 aa10.96□□□□□ -0.65
CLN3-248ENST00000636355 ZNF148Q9UQR1 794 aa10.96□□□□□ -0.65
CLN3-248ENST00000636355 SLC4A7Q9Y6M7 1214 aa10.96□□□□□ -0.65
CLN3-248ENST00000636355 HELZP42694 1942 aaKnown RBP10.96□□□□□ -0.66
CLN3-248ENST00000636355 GBF1Q92538 1859 aa10.95□□□□□ -0.66
CLN3-248ENST00000636355 A0A1W2PQH9 124 aa10.95□□□□□ -0.66
CLN3-248ENST00000636355 EEF2KO00418 725 aaKnown RBP10.95□□□□□ -0.66
CLN3-248ENST00000636355 MTSS1O43312 755 aa10.95□□□□□ -0.66
CLN3-248ENST00000636355 FGF18O76093 207 aa10.95□□□□□ -0.66
CLN3-248ENST00000636355 IGLV3-27P01718 113 aa10.95□□□□□ -0.66
CLN3-248ENST00000636355 RBP3P10745 1247 aa10.95□□□□□ -0.66
CLN3-248ENST00000636355 ATF6P18850 670 aa10.95□□□□□ -0.66
CLN3-248ENST00000636355 TNNT3P45378 269 aaPredicted RBP10.95□□□□□ -0.66
CLN3-248ENST00000636355 TPI1P60174 286 aa10.95□□□□□ -0.66
CLN3-248ENST00000636355 EIF3EP60228 445 aaKnown RBP10.95□□□□□ -0.66
CLN3-248ENST00000636355 DYNLT1P63172 113 aa10.95□□□□□ -0.66
CLN3-248ENST00000636355 PITX1P78337 314 aaPredicted RBP10.95□□□□□ -0.66
CLN3-248ENST00000636355 ZNF33AQ06730 810 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms