RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 ACADSP16219 412 aa13.19□□□□□ -0.3
LINC00540-203ENST00000631321 HOXA11P31270 313 aaPredicted RBP13.19□□□□□ -0.3
LINC00540-203ENST00000631321 RAP1GDS1P52306 607 aa13.19□□□□□ -0.3
LINC00540-203ENST00000631321 BST2Q10589 180 aaKnown RBP13.19□□□□□ -0.3
LINC00540-203ENST00000631321 NBPF20Q3BBV1 942 aa13.19□□□□□ -0.3
LINC00540-203ENST00000631321 ZNF792Q3KQV3 632 aa13.19□□□□□ -0.3
LINC00540-203ENST00000631321 NCBP2-AS2Q69YL0 99 aa13.19□□□□□ -0.3
LINC00540-203ENST00000631321 ALYREFQ86V81 257 aaKnown RBP13.19□□□□□ -0.3
LINC00540-203ENST00000631321 NDUFAF2Q8N183 169 aa13.19□□□□□ -0.3
LINC00540-203ENST00000631321 LRRN4Q8WUT4 740 aa13.19□□□□□ -0.3
LINC00540-203ENST00000631321 SLC13A1Q9BZW2 595 aa13.19□□□□□ -0.3
LINC00540-203ENST00000631321 WWP1Q9H0M0 922 aa13.19□□□□□ -0.3
LINC00540-203ENST00000631321 CXCL16Q9H2A7 254 aa13.19□□□□□ -0.3
LINC00540-203ENST00000631321 DTLQ9NZJ0 730 aa13.19□□□□□ -0.3
LINC00540-203ENST00000631321 RCOR3Q9P2K3 495 aaPredicted RBP13.19□□□□□ -0.3
LINC00540-203ENST00000631321 STOML1Q9UBI4 398 aa13.19□□□□□ -0.3
LINC00540-203ENST00000631321 SUFUQ9UMX1 484 aa13.19□□□□□ -0.3
LINC00540-203ENST00000631321 MAGEC1O60732 1142 aa13.19□□□□□ -0.3
LINC00540-203ENST00000631321 FDFT1P37268 417 aa13.19□□□□□ -0.3
LINC00540-203ENST00000631321 BCAT1P54687 386 aa13.19□□□□□ -0.3
LINC00540-203ENST00000631321 SOWAHAQ2M3V2 549 aa13.19□□□□□ -0.3
LINC00540-203ENST00000631321 ACSBG2Q5FVE4 666 aa13.19□□□□□ -0.3
LINC00540-203ENST00000631321 KYAT3Q6YP21 454 aaKnown RBP13.19□□□□□ -0.3
LINC00540-203ENST00000631321 MARK2Q7KZI7 788 aaKnown RBP13.19□□□□□ -0.3
LINC00540-203ENST00000631321 APBB1IPQ7Z5R6 666 aaPredicted RBP13.19□□□□□ -0.3
LINC00540-203ENST00000631321 CRYBG2Q8N1P7 616 aa13.19□□□□□ -0.3
LINC00540-203ENST00000631321 STKLD1Q8NE28 680 aa13.19□□□□□ -0.3
LINC00540-203ENST00000631321 BEST2Q8NFU1 509 aa13.19□□□□□ -0.3
LINC00540-203ENST00000631321 ACMSDQ8TDX5 336 aa13.19□□□□□ -0.3
LINC00540-203ENST00000631321 TRIM56Q9BRZ2 755 aaKnown RBP13.19□□□□□ -0.3
LINC00540-203ENST00000631321 EIF2B3Q9NR50 452 aaKnown RBP13.19□□□□□ -0.3
LINC00540-203ENST00000631321 PCMTD2Q9NV79 361 aa13.19□□□□□ -0.3
LINC00540-203ENST00000631321 MORF4L1Q9UBU8 362 aa13.19□□□□□ -0.3
LINC00540-203ENST00000631321 CORO1CQ9ULV4 474 aaPredicted RBP13.19□□□□□ -0.3
LINC00540-203ENST00000631321 HBS1LQ9Y450 684 aaKnown RBP13.19□□□□□ -0.3
LINC00540-203ENST00000631321 A0A0A0MRY4 1105 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 H0Y3Z8 333 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 CYB561D2O14569 222 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 NPTXRO95502 500 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 HOXD8P13378 290 aaPredicted RBP13.18□□□□□ -0.3
LINC00540-203ENST00000631321 GRIA1P42261 906 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 ATXN1P54253 815 aaKnown RBP13.18□□□□□ -0.3
LINC00540-203ENST00000631321 SARNPP82979 210 aaKnown RBP13.18□□□□□ -0.3
LINC00540-203ENST00000631321 WASHC5Q12768 1159 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 KPNB1Q14974 876 aaKnown RBP13.18□□□□□ -0.3
LINC00540-203ENST00000631321 TBCCQ15814 346 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 MROH9Q5TGP6 573 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 HEATR6Q6AI08 1181 aaKnown RBP13.18□□□□□ -0.3
LINC00540-203ENST00000631321 ALKAL1Q6UXT8 129 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 STRADAQ7RTN6 431 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 CRLF3Q8IUI8 442 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 PSTKQ8IV42 348 aaKnown RBP13.18□□□□□ -0.3
LINC00540-203ENST00000631321 HACE1Q8IYU2 909 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 ADGRF2Q8IZF7 708 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 ARHGAP24Q8N264 748 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 CLEC4CQ8WTT0 213 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 MCUR1Q96AQ8 359 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 SPATA13Q96N96 652 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 KATNBL1Q9H079 304 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 ADAMTS10Q9H324 1103 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 DPEP3Q9H4B8 488 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.18□□□□□ -0.3
LINC00540-203ENST00000631321 SNTG2Q9NY99 539 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 ARMCX1Q9P291 453 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 TUBGCP4Q9UGJ1 667 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 A8MXQ7 604 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 H3BRB1 525 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 GSRP00390 522 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 VAV1P15498 845 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 ACADSBP45954 432 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 NIPAL4Q0D2K0 466 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 NAB1Q13506 487 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 GRIK4Q16099 956 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 C9orf57Q5W0N0 161 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 TREML1Q86YW5 311 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 TMPRSS6Q8IU80 811 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 ARID3BQ8IVW6 561 aaPredicted RBP13.18□□□□□ -0.3
LINC00540-203ENST00000631321 CCDC185Q8N715 623 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 SMC1BQ8NDV3 1235 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 OR6B3Q8NGW1 331 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 DEPDC1BQ8WUY9 529 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 TFB1MQ8WVM0 346 aaKnown RBP13.18□□□□□ -0.3
LINC00540-203ENST00000631321 HTR3CQ8WXA8 447 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 HSFY1Q96LI6 401 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 SIKE1Q9BRV8 207 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 TUT1Q9H6E5 874 aaKnown RBP13.18□□□□□ -0.3
LINC00540-203ENST00000631321 THAP1Q9NVV9 213 aa13.18□□□□□ -0.3
LINC00540-203ENST00000631321 A6NHS1 94 aa13.17□□□□□ -0.3
LINC00540-203ENST00000631321 VHLP40337 213 aa13.17□□□□□ -0.3
LINC00540-203ENST00000631321 RCN1Q15293 331 aa13.17□□□□□ -0.3
LINC00540-203ENST00000631321 TSNAXIP1Q2TAA8 658 aa13.17□□□□□ -0.3
LINC00540-203ENST00000631321 LRRC8BQ6P9F7 803 aa13.17□□□□□ -0.3
LINC00540-203ENST00000631321 SLC27A1Q6PCB7 646 aa13.17□□□□□ -0.3
LINC00540-203ENST00000631321 CCNJLQ8IV13 435 aa13.17□□□□□ -0.3
LINC00540-203ENST00000631321 DNAJC9Q8WXX5 260 aa13.17□□□□□ -0.3
LINC00540-203ENST00000631321 C18orf25Q96B23 403 aaPredicted RBP13.17□□□□□ -0.3
LINC00540-203ENST00000631321 ZNF333Q96JL9 665 aa13.17□□□□□ -0.3
LINC00540-203ENST00000631321 LPIN3Q9BQK8 851 aa13.17□□□□□ -0.3
LINC00540-203ENST00000631321 MAGEB5Q9BZ81 275 aa13.17□□□□□ -0.3
LINC00540-203ENST00000631321 ZNF395Q9H8N7 513 aaPredicted RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms