RNA–Protein interactions for RNA: ENST00000620787.4

PDLIM3-212, Transcript of PDZ and LIM domain 3, humanhuman

TSL 4 BASIC

Gene PDLIM3, Length 2,352 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-212ENST00000620787 CDH22Q9UJ99 828 aa20.22■□□□□ 0.83
PDLIM3-212ENST00000620787 COMMD3-BMI1R4GMX3 469 aa20.22■□□□□ 0.83
PDLIM3-212ENST00000620787 SF3B1O75533 1304 aaKnown RBP eCLIP20.21■□□□□ 0.83
PDLIM3-212ENST00000620787 CILPO75339 1184 aa20.21■□□□□ 0.83
PDLIM3-212ENST00000620787 SRGAP2CP0DJJ0 459 aa20.21■□□□□ 0.83
PDLIM3-212ENST00000620787 N4BP2L1Q5TBK1 243 aaPredicted RBP20.21■□□□□ 0.83
PDLIM3-212ENST00000620787 KRT27Q7Z3Y8 459 aa20.21■□□□□ 0.83
PDLIM3-212ENST00000620787 UBA3Q8TBC4 463 aa20.21■□□□□ 0.83
PDLIM3-212ENST00000620787 USP6NLQ92738 828 aa20.21■□□□□ 0.83
PDLIM3-212ENST00000620787 PCDH18Q9HCL0 1135 aa20.21■□□□□ 0.83
PDLIM3-212ENST00000620787 LOC285556D6RIA3 1793 aa20.21■□□□□ 0.83
PDLIM3-212ENST00000620787 OPHN1O60890 802 aa20.21■□□□□ 0.83
PDLIM3-212ENST00000620787 PROCP04070 461 aa20.21■□□□□ 0.83
PDLIM3-212ENST00000620787 PROZP22891 400 aa20.21■□□□□ 0.83
PDLIM3-212ENST00000620787 CNTFP26441 200 aa20.21■□□□□ 0.83
PDLIM3-212ENST00000620787 DLG1Q12959 904 aa20.21■□□□□ 0.83
PDLIM3-212ENST00000620787 LSAMPQ13449 338 aa20.21■□□□□ 0.83
PDLIM3-212ENST00000620787 FAM183BPQ6ZVS7 135 aa20.21■□□□□ 0.83
PDLIM3-212ENST00000620787 TMEM176AQ96HP8 235 aa20.21■□□□□ 0.83
PDLIM3-212ENST00000620787 SORT1Q99523 831 aa20.21■□□□□ 0.83
PDLIM3-212ENST00000620787 NDNQ99608 321 aa20.21■□□□□ 0.83
PDLIM3-212ENST00000620787 NRBP2Q9NSY0 501 aa20.21■□□□□ 0.83
PDLIM3-212ENST00000620787 ADAMTS5Q9UNA0 930 aa20.21■□□□□ 0.83
PDLIM3-212ENST00000620787 GRAP2O75791 330 aa20.2■□□□□ 0.82
PDLIM3-212ENST00000620787 ALDOAP04075 364 aaKnown RBP20.2■□□□□ 0.82
PDLIM3-212ENST00000620787 ETS2P15036 469 aa20.2■□□□□ 0.82
PDLIM3-212ENST00000620787 VCLP18206 1134 aa20.2■□□□□ 0.82
PDLIM3-212ENST00000620787 TPSB2P20231 275 aa20.2■□□□□ 0.82
PDLIM3-212ENST00000620787 KCNA4P22459 653 aa20.2■□□□□ 0.82
PDLIM3-212ENST00000620787 ADORA2AP29274 412 aa20.2■□□□□ 0.82
PDLIM3-212ENST00000620787 GRIA1P42261 906 aa20.2■□□□□ 0.82
PDLIM3-212ENST00000620787 IDH3AP50213 366 aa20.2■□□□□ 0.82
PDLIM3-212ENST00000620787 PCLAFQ15004 111 aa20.2■□□□□ 0.82
PDLIM3-212ENST00000620787 TPSAB1Q15661 275 aa20.2■□□□□ 0.82
PDLIM3-212ENST00000620787 MPZL3Q6UWV2 235 aa20.2■□□□□ 0.82
PDLIM3-212ENST00000620787 UNC5BQ8IZJ1 945 aa20.2■□□□□ 0.82
PDLIM3-212ENST00000620787 CCDC33Q8N5R6 958 aa20.2■□□□□ 0.82
PDLIM3-212ENST00000620787 AGBL3Q8NEM8 1001 aa20.2■□□□□ 0.82
PDLIM3-212ENST00000620787 EZH1Q92800 747 aaPredicted RBP20.2■□□□□ 0.82
PDLIM3-212ENST00000620787 CCDC124Q96CT7 223 aaKnown RBP20.2■□□□□ 0.82
PDLIM3-212ENST00000620787 ACAD9Q9H845 621 aa20.2■□□□□ 0.82
PDLIM3-212ENST00000620787 DNAJC28Q9NX36 388 aa20.2■□□□□ 0.82
PDLIM3-212ENST00000620787 SLC17A6Q9P2U8 582 aa20.2■□□□□ 0.82
PDLIM3-212ENST00000620787 TRIP11Q15643 1979 aa20.2■□□□□ 0.82
PDLIM3-212ENST00000620787 PLIN3O60664 434 aa20.2■□□□□ 0.82
PDLIM3-212ENST00000620787 LAMTOR4Q0VGL1 99 aa20.2■□□□□ 0.82
PDLIM3-212ENST00000620787 CA9Q16790 459 aa20.2■□□□□ 0.82
PDLIM3-212ENST00000620787 CCDC14Q49A88 953 aa20.2■□□□□ 0.82
PDLIM3-212ENST00000620787 OR6B2Q6IFH4 312 aa20.2■□□□□ 0.82
PDLIM3-212ENST00000620787 RSPH3Q86UC2 560 aa20.2■□□□□ 0.82
PDLIM3-212ENST00000620787 C1orf127Q8N9H9 656 aa20.2■□□□□ 0.82
PDLIM3-212ENST00000620787 DRAXINQ8NBI3 349 aaPredicted RBP20.2■□□□□ 0.82
PDLIM3-212ENST00000620787 NAT14Q8WUY8 206 aa20.2■□□□□ 0.82
PDLIM3-212ENST00000620787 SHCBP1LQ9BZQ2 653 aa20.2■□□□□ 0.82
PDLIM3-212ENST00000620787 UBE2OQ9C0C9 1292 aaKnown RBP20.2■□□□□ 0.82
PDLIM3-212ENST00000620787 PTPRHQ9HD43 1115 aa20.2■□□□□ 0.82
PDLIM3-212ENST00000620787 PNPOQ9NVS9 261 aa20.2■□□□□ 0.82
PDLIM3-212ENST00000620787 POMPQ9Y244 141 aa20.2■□□□□ 0.82
PDLIM3-212ENST00000620787 ITGAXP20702 1163 aa20.19■□□□□ 0.82
PDLIM3-212ENST00000620787 CYP3A5P20815 502 aa20.19■□□□□ 0.82
PDLIM3-212ENST00000620787 ARRB2P32121 409 aa20.19■□□□□ 0.82
PDLIM3-212ENST00000620787 BACE1P56817 501 aa20.19■□□□□ 0.82
PDLIM3-212ENST00000620787 PDE1CQ14123 709 aaPredicted RBP20.19■□□□□ 0.82
PDLIM3-212ENST00000620787 STXBP2Q15833 593 aa20.19■□□□□ 0.82
PDLIM3-212ENST00000620787 TMEM192Q8IY95 271 aa20.19■□□□□ 0.82
PDLIM3-212ENST00000620787 RNF149Q8NC42 400 aa20.19■□□□□ 0.82
PDLIM3-212ENST00000620787 ACMSDQ8TDX5 336 aa20.19■□□□□ 0.82
PDLIM3-212ENST00000620787 DTNBP1Q96EV8 351 aa20.19■□□□□ 0.82
PDLIM3-212ENST00000620787 CYP4F11Q9HBI6 524 aa20.19■□□□□ 0.82
PDLIM3-212ENST00000620787 ZNF195O14628 629 aa20.19■□□□□ 0.82
PDLIM3-212ENST00000620787 GLRA3O75311 464 aa20.19■□□□□ 0.82
PDLIM3-212ENST00000620787 SERPINE1P05121 402 aa20.19■□□□□ 0.82
PDLIM3-212ENST00000620787 PRKCGP05129 697 aa20.19■□□□□ 0.82
PDLIM3-212ENST00000620787 CXCL8P10145 99 aa20.19■□□□□ 0.82
PDLIM3-212ENST00000620787 ALOX15P16050 662 aaPredicted RBP20.19■□□□□ 0.82
PDLIM3-212ENST00000620787 BOLA3Q53S33 107 aa20.19■□□□□ 0.82
PDLIM3-212ENST00000620787 STEAP4Q687X5 459 aa20.19■□□□□ 0.82
PDLIM3-212ENST00000620787 PDPK2PQ6A1A2 396 aa20.19■□□□□ 0.82
PDLIM3-212ENST00000620787 SCYL2Q6P3W7 929 aa20.19■□□□□ 0.82
PDLIM3-212ENST00000620787 C4orf22Q6V702 233 aa20.19■□□□□ 0.82
PDLIM3-212ENST00000620787 CDR2LQ86X02 465 aaPredicted RBP20.19■□□□□ 0.82
PDLIM3-212ENST00000620787 ZBTB8OSQ8IWT0 167 aa20.19■□□□□ 0.82
PDLIM3-212ENST00000620787 NME8Q8N427 588 aa20.19■□□□□ 0.82
PDLIM3-212ENST00000620787 B4GALNT2Q8NHY0 566 aa20.19■□□□□ 0.82
PDLIM3-212ENST00000620787 H3BNX3 289 aa20.18■□□□□ 0.82
PDLIM3-212ENST00000620787 TPP1O14773 563 aa20.18■□□□□ 0.82
PDLIM3-212ENST00000620787 CASQ2O14958 399 aaPredicted RBP20.18■□□□□ 0.82
PDLIM3-212ENST00000620787 GCATO75600 419 aa20.18■□□□□ 0.82
PDLIM3-212ENST00000620787 NFICP08651 508 aa20.18■□□□□ 0.82
PDLIM3-212ENST00000620787 RAG1P15918 1043 aa20.18■□□□□ 0.82
PDLIM3-212ENST00000620787 UBA1P22314 1058 aaKnown RBP20.18■□□□□ 0.82
PDLIM3-212ENST00000620787 RPL26P61254 145 aaKnown RBP20.18■□□□□ 0.82
PDLIM3-212ENST00000620787 TRIP10Q15642 601 aa20.18■□□□□ 0.82
PDLIM3-212ENST00000620787 IER5Q5VY09 327 aa20.18■□□□□ 0.82
PDLIM3-212ENST00000620787 EEF1DP3Q658K8 133 aa20.18■□□□□ 0.82
PDLIM3-212ENST00000620787 TSHZ1Q6ZSZ6 1077 aa20.18■□□□□ 0.82
PDLIM3-212ENST00000620787 CYS1Q717R9 158 aa20.18■□□□□ 0.82
PDLIM3-212ENST00000620787 CDKL3Q8IVW4 592 aaPredicted RBP20.18■□□□□ 0.82
PDLIM3-212ENST00000620787 DEFB107AQ8IZN7 70 aa20.18■□□□□ 0.82
PDLIM3-212ENST00000620787 TFB1MQ8WVM0 346 aaKnown RBP20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms