RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 PARVAQ9NVD7 372 aa20.14■□□□□ 0.81
UPF1-209ENST00000600310 TMEM51Q9NW97 253 aa20.14■□□□□ 0.81
UPF1-209ENST00000600310 DDIT4Q9NX09 232 aa20.14■□□□□ 0.81
UPF1-209ENST00000600310 GTSE1Q9NYZ3 720 aa20.14■□□□□ 0.81
UPF1-209ENST00000600310 CNOT8Q9UFF9 292 aaKnown RBP20.14■□□□□ 0.81
UPF1-209ENST00000600310 GOLGA6L6A8MZA4 724 aa20.13■□□□□ 0.81
UPF1-209ENST00000600310 M0QYT0 321 aa20.13■□□□□ 0.81
UPF1-209ENST00000600310 SULT1E1P49888 294 aa20.13■□□□□ 0.81
UPF1-209ENST00000600310 MRE11P49959 708 aa20.13■□□□□ 0.81
UPF1-209ENST00000600310 SIGLEC14Q08ET2 396 aa20.13■□□□□ 0.81
UPF1-209ENST00000600310 ITPRIPL2Q3MIP1 535 aa20.13■□□□□ 0.81
UPF1-209ENST00000600310 SLC44A4Q53GD3 710 aa20.13■□□□□ 0.81
UPF1-209ENST00000600310 OTUD1Q5VV17 481 aaPredicted RBP20.13■□□□□ 0.81
UPF1-209ENST00000600310 BNIPLQ7Z465 357 aa20.13■□□□□ 0.81
UPF1-209ENST00000600310 DENND1CQ8IV53 801 aa20.13■□□□□ 0.81
UPF1-209ENST00000600310 C1QTNF1Q9BXJ1 281 aa20.13■□□□□ 0.81
UPF1-209ENST00000600310 ECT2Q9H8V3 914 aa20.13■□□□□ 0.81
UPF1-209ENST00000600310 FBXL21Q9UKT6 434 aa20.13■□□□□ 0.81
UPF1-209ENST00000600310 AGO1Q9UL18 857 aaKnown RBP20.13■□□□□ 0.81
UPF1-209ENST00000600310 ANKRD62A6NC57 917 aa20.12■□□□□ 0.81
UPF1-209ENST00000600310 OTOL1A6NHN0 477 aaPredicted RBP20.12■□□□□ 0.81
UPF1-209ENST00000600310 ATMINO43313 823 aaPredicted RBP20.12■□□□□ 0.81
UPF1-209ENST00000600310 NFATC1O95644 943 aa20.12■□□□□ 0.81
UPF1-209ENST00000600310 LATS1O95835 1130 aa20.12■□□□□ 0.81
UPF1-209ENST00000600310 F9P00740 461 aa20.12■□□□□ 0.81
UPF1-209ENST00000600310 PDGFRAP16234 1089 aa20.12■□□□□ 0.81
UPF1-209ENST00000600310 TFE3P19532 575 aaPredicted RBP20.12■□□□□ 0.81
UPF1-209ENST00000600310 ABCB4P21439 1286 aa20.12■□□□□ 0.81
UPF1-209ENST00000600310 GALCP54803 685 aa20.12■□□□□ 0.81
UPF1-209ENST00000600310 MLLT6P55198 1093 aaPredicted RBP20.12■□□□□ 0.81
UPF1-209ENST00000600310 RPL7AP62424 266 aaKnown RBP20.12■□□□□ 0.81
UPF1-209ENST00000600310 IER5LQ5T953 404 aa20.12■□□□□ 0.81
UPF1-209ENST00000600310 DCUN1D2Q6PH85 259 aa20.12■□□□□ 0.81
UPF1-209ENST00000600310 TMTC1Q8IUR5 882 aa20.12■□□□□ 0.81
UPF1-209ENST00000600310 CCDC170Q8IYT3 715 aa20.12■□□□□ 0.81
UPF1-209ENST00000600310 CPA6Q8N4T0 437 aa20.12■□□□□ 0.81
UPF1-209ENST00000600310 AZIN2Q96A70 460 aa20.12■□□□□ 0.81
UPF1-209ENST00000600310 CFAP57Q96MR6 1250 aa20.12■□□□□ 0.81
UPF1-209ENST00000600310 MCEEQ96PE7 176 aa20.12■□□□□ 0.81
UPF1-209ENST00000600310 TBCBQ99426 244 aa20.12■□□□□ 0.81
UPF1-209ENST00000600310 ADAM33Q9BZ11 813 aa20.12■□□□□ 0.81
UPF1-209ENST00000600310 THAP2Q9H0W7 228 aa20.12■□□□□ 0.81
UPF1-209ENST00000600310 SPTLC3Q9NUV7 552 aa20.12■□□□□ 0.81
UPF1-209ENST00000600310 SLTMQ9NWH9 1034 aaKnown RBP eCLIP20.12■□□□□ 0.81
UPF1-209ENST00000600310 CALCOCO1Q9P1Z2 691 aa20.12■□□□□ 0.81
UPF1-209ENST00000600310 RAPGEFL1Q9UHV5 662 aa20.12■□□□□ 0.81
UPF1-209ENST00000600310 STOML2Q9UJZ1 356 aa20.12■□□□□ 0.81
UPF1-209ENST00000600310 KIF26AQ9ULI4 1882 aaPredicted RBP20.11■□□□□ 0.81
UPF1-209ENST00000600310 ENDOD1O94919 500 aa20.11■□□□□ 0.81
UPF1-209ENST00000600310 SLC2A3P11169 496 aa20.11■□□□□ 0.81
UPF1-209ENST00000600310 GLULP15104 373 aa20.11■□□□□ 0.81
UPF1-209ENST00000600310 GPD1P21695 349 aa20.11■□□□□ 0.81
UPF1-209ENST00000600310 SDC4P31431 198 aa20.11■□□□□ 0.81
UPF1-209ENST00000600310 PTPN9P43378 593 aa20.11■□□□□ 0.81
UPF1-209ENST00000600310 GSDMDP57764 484 aa20.11■□□□□ 0.81
UPF1-209ENST00000600310 NR1H3Q13133 447 aa20.11■□□□□ 0.81
UPF1-209ENST00000600310 NME3Q13232 169 aa20.11■□□□□ 0.81
UPF1-209ENST00000600310 DHCR24Q15392 516 aa20.11■□□□□ 0.81
UPF1-209ENST00000600310 MLF2Q15773 248 aaPredicted RBP20.11■□□□□ 0.81
UPF1-209ENST00000600310 CCDC14Q49A88 953 aa20.11■□□□□ 0.81
UPF1-209ENST00000600310 ZC3H12AQ5D1E8 599 aaKnown RBP20.11■□□□□ 0.81
UPF1-209ENST00000600310 RHBDF2Q6PJF5 856 aa20.11■□□□□ 0.81
UPF1-209ENST00000600310 TRIM67Q6ZTA4 783 aa20.11■□□□□ 0.81
UPF1-209ENST00000600310 FAM217AQ8IXS0 508 aa20.11■□□□□ 0.81
UPF1-209ENST00000600310 C8orf33Q9H7E9 229 aaPredicted RBP20.11■□□□□ 0.81
UPF1-209ENST00000600310 MRPL47Q9HD33 250 aaKnown RBP20.11■□□□□ 0.81
UPF1-209ENST00000600310 ARHGEF3Q9NR81 526 aa20.11■□□□□ 0.81
UPF1-209ENST00000600310 HEBP1Q9NRV9 189 aa20.11■□□□□ 0.81
UPF1-209ENST00000600310 MYO1AQ9UBC5 1043 aa20.11■□□□□ 0.81
UPF1-209ENST00000600310 CA14Q9ULX7 337 aa20.11■□□□□ 0.81
UPF1-209ENST00000600310 SCINQ9Y6U3 715 aa20.11■□□□□ 0.81
UPF1-209ENST00000600310 SYNJ2BP-COX16A0A087WUM0 186 aa20.1■□□□□ 0.81
UPF1-209ENST00000600310 KRBA1A5PL33 1030 aa20.1■□□□□ 0.81
UPF1-209ENST00000600310 KCNU1A8MYU2 1149 aa20.1■□□□□ 0.81
UPF1-209ENST00000600310 APOEP02649 317 aa20.1■□□□□ 0.81
UPF1-209ENST00000600310 CYP17A1P05093 508 aa20.1■□□□□ 0.81
UPF1-209ENST00000600310 CYP1A2P05177 515 aa20.1■□□□□ 0.81
UPF1-209ENST00000600310 H2AFZP0C0S5 128 aa20.1■□□□□ 0.81
UPF1-209ENST00000600310 CCR1P32246 355 aa20.1■□□□□ 0.81
UPF1-209ENST00000600310 RDXP35241 583 aaKnown RBP20.1■□□□□ 0.81
UPF1-209ENST00000600310 CHKAP35790 457 aa20.1■□□□□ 0.81
UPF1-209ENST00000600310 SLC11A2P49281 568 aa20.1■□□□□ 0.81
UPF1-209ENST00000600310 CXCR3P49682 368 aa20.1■□□□□ 0.81
UPF1-209ENST00000600310 ZNF143P52747 638 aaPredicted RBP20.1■□□□□ 0.81
UPF1-209ENST00000600310 PRKCQQ04759 706 aa20.1■□□□□ 0.81
UPF1-209ENST00000600310 DEUP1Q05D60 604 aa20.1■□□□□ 0.81
UPF1-209ENST00000600310 PPP2R5DQ14738 602 aa20.1■□□□□ 0.81
UPF1-209ENST00000600310 H2AFVQ71UI9 128 aa20.1■□□□□ 0.81
UPF1-209ENST00000600310 CPXM2Q8N436 756 aa20.1■□□□□ 0.81
UPF1-209ENST00000600310 TTC8Q8TAM2 541 aa20.1■□□□□ 0.81
UPF1-209ENST00000600310 CENPIQ92674 756 aaPredicted RBP20.1■□□□□ 0.81
UPF1-209ENST00000600310 MSANTD3Q96H12 275 aa20.1■□□□□ 0.81
UPF1-209ENST00000600310 EPHX3Q9H6B9 360 aa20.1■□□□□ 0.81
UPF1-209ENST00000600310 PIGVQ9NUD9 493 aa20.1■□□□□ 0.81
UPF1-209ENST00000600310 COX16Q9P0S2 106 aa20.1■□□□□ 0.81
UPF1-209ENST00000600310 TMEM191CA6NGB0 347 aa20.09■□□□□ 0.81
UPF1-209ENST00000600310 ACSL4O60488 711 aa20.09■□□□□ 0.81
UPF1-209ENST00000600310 LCA5LO95447 670 aa20.09■□□□□ 0.81
UPF1-209ENST00000600310 ADH1CP00326 375 aa20.09■□□□□ 0.81
UPF1-209ENST00000600310 CYLC1P35663 651 aaPredicted RBP20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms