RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 TRPC7Q9HCX4 862 aa13.3□□□□□ -0.28
UPF1-208ENST00000600012 LUC7LQ9NQ29 371 aaKnown RBP13.3□□□□□ -0.28
UPF1-208ENST00000600012 GTF3C4Q9UKN8 822 aa13.3□□□□□ -0.28
UPF1-208ENST00000600012 PCDHGC3Q9UN70 934 aa13.3□□□□□ -0.28
UPF1-208ENST00000600012 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.3□□□□□ -0.28
UPF1-208ENST00000600012 GOLGA6L9A6NEM1 432 aa13.29□□□□□ -0.28
UPF1-208ENST00000600012 M0QYV0 167 aa13.29□□□□□ -0.28
UPF1-208ENST00000600012 PJA2O43164 708 aa13.29□□□□□ -0.28
UPF1-208ENST00000600012 ATP2C2O75185 946 aa13.29□□□□□ -0.28
UPF1-208ENST00000600012 FTLP02792 175 aaPredicted RBP13.29□□□□□ -0.28
UPF1-208ENST00000600012 FAM163BP0C2L3 166 aa13.29□□□□□ -0.28
UPF1-208ENST00000600012 UNGP13051 313 aaPredicted RBP13.29□□□□□ -0.28
UPF1-208ENST00000600012 CCDC130P13994 396 aa13.29□□□□□ -0.28
UPF1-208ENST00000600012 GJA4P35212 333 aa13.29□□□□□ -0.28
UPF1-208ENST00000600012 IFNAR2P48551 515 aa13.29□□□□□ -0.28
UPF1-208ENST00000600012 GALK1P51570 392 aa13.29□□□□□ -0.28
UPF1-208ENST00000600012 KIF5AQ12840 1032 aa13.29□□□□□ -0.28
UPF1-208ENST00000600012 ZNF77Q15935 545 aa13.29□□□□□ -0.28
UPF1-208ENST00000600012 C10orf76Q5T2E6 689 aa13.29□□□□□ -0.28
UPF1-208ENST00000600012 PPP1R26Q5T8A7 1209 aaPredicted RBP13.29□□□□□ -0.28
UPF1-208ENST00000600012 ACAD10Q6JQN1 1059 aa13.29□□□□□ -0.28
UPF1-208ENST00000600012 B3GALNT2Q8NCR0 500 aa13.29□□□□□ -0.28
UPF1-208ENST00000600012 OSCP1Q8WVF1 389 aa13.29□□□□□ -0.28
UPF1-208ENST00000600012 CPA5Q8WXQ8 436 aa13.29□□□□□ -0.28
UPF1-208ENST00000600012 ATP2A3Q93084 1043 aa13.29□□□□□ -0.28
UPF1-208ENST00000600012 ACDQ96AP0 544 aa13.29□□□□□ -0.28
UPF1-208ENST00000600012 ZC3H10Q96K80 434 aaKnown RBP13.29□□□□□ -0.28
UPF1-208ENST00000600012 C16orf45Q96MC5 204 aaPredicted RBP13.29□□□□□ -0.28
UPF1-208ENST00000600012 SYT15Q9BQS2 421 aa13.29□□□□□ -0.28
UPF1-208ENST00000600012 ISCUQ9H1K1 167 aa13.29□□□□□ -0.28
UPF1-208ENST00000600012 FBRSL1Q9HCM7 1045 aaKnown RBP13.29□□□□□ -0.28
UPF1-208ENST00000600012 RRAGDQ9NQL2 400 aaPredicted RBP13.29□□□□□ -0.28
UPF1-208ENST00000600012 DUS2Q9NX74 493 aaKnown RBP13.29□□□□□ -0.28
UPF1-208ENST00000600012 TSPAN16Q9UKR8 245 aa13.29□□□□□ -0.28
UPF1-208ENST00000600012 GUCA1BQ9UMX6 200 aa13.29□□□□□ -0.28
UPF1-208ENST00000600012 DUSP10Q9Y6W6 482 aa13.29□□□□□ -0.28
UPF1-208ENST00000600012 ATP8B3O60423 1300 aa13.29□□□□□ -0.28
UPF1-208ENST00000600012 NUP205Q92621 2012 aa13.29□□□□□ -0.28
UPF1-208ENST00000600012 ATMINO43313 823 aaPredicted RBP13.28□□□□□ -0.28
UPF1-208ENST00000600012 KRT37O76014 449 aa13.28□□□□□ -0.28
UPF1-208ENST00000600012 GZMAP12544 262 aa13.28□□□□□ -0.28
UPF1-208ENST00000600012 TCF3P15923 654 aa13.28□□□□□ -0.28
UPF1-208ENST00000600012 KCNA4P22459 653 aa13.28□□□□□ -0.28
UPF1-208ENST00000600012 ADORA2BP29275 332 aa13.28□□□□□ -0.28
UPF1-208ENST00000600012 MPLP40238 635 aa13.28□□□□□ -0.28
UPF1-208ENST00000600012 MAGEA11P43364 429 aa13.28□□□□□ -0.28
UPF1-208ENST00000600012 CENPCQ03188 943 aa13.28□□□□□ -0.28
UPF1-208ENST00000600012 NR1H3Q13133 447 aa13.28□□□□□ -0.28
UPF1-208ENST00000600012 CCDC6Q16204 474 aa13.28□□□□□ -0.28
UPF1-208ENST00000600012 CNGA2Q16280 664 aa13.28□□□□□ -0.28
UPF1-208ENST00000600012 ST3GAL2Q16842 350 aa13.28□□□□□ -0.28
UPF1-208ENST00000600012 C2CD6Q53TS8 623 aa13.28□□□□□ -0.28
UPF1-208ENST00000600012 MDH1BQ5I0G3 518 aa13.28□□□□□ -0.28
UPF1-208ENST00000600012 PLA2G2CQ5R387 149 aa13.28□□□□□ -0.28
UPF1-208ENST00000600012 ARHGAP17Q68EM7 881 aa13.28□□□□□ -0.28
UPF1-208ENST00000600012 C4orf50Q6ZRC1 276 aa13.28□□□□□ -0.28
UPF1-208ENST00000600012 SYT13Q7L8C5 426 aa13.28□□□□□ -0.28
UPF1-208ENST00000600012 SCN4BQ8IWT1 228 aa13.28□□□□□ -0.28
UPF1-208ENST00000600012 CRYBG2Q8N1P7 616 aa13.28□□□□□ -0.28
UPF1-208ENST00000600012 RPLP0P6Q8NHW5 317 aa13.28□□□□□ -0.28
UPF1-208ENST00000600012 CCDC26Q8TAB7 109 aa13.28□□□□□ -0.28
UPF1-208ENST00000600012 UBA3Q8TBC4 463 aa13.28□□□□□ -0.28
UPF1-208ENST00000600012 CD101Q93033 1021 aa13.28□□□□□ -0.28
UPF1-208ENST00000600012 ARHGEF26Q96DR7 871 aa13.28□□□□□ -0.28
UPF1-208ENST00000600012 TNIP3Q96KP6 325 aa13.28□□□□□ -0.28
UPF1-208ENST00000600012 HHIPQ96QV1 700 aa13.28□□□□□ -0.28
UPF1-208ENST00000600012 SLC22A12Q96S37 553 aa13.28□□□□□ -0.28
UPF1-208ENST00000600012 C11orf70Q9BRQ4 267 aa13.28□□□□□ -0.28
UPF1-208ENST00000600012 THAP2Q9H0W7 228 aa13.28□□□□□ -0.28
UPF1-208ENST00000600012 CRTAC1Q9NQ79 661 aa13.28□□□□□ -0.28
UPF1-208ENST00000600012 KIAA1257Q9ULG3 409 aa13.28□□□□□ -0.28
UPF1-208ENST00000600012 CEP83Q9Y592 693 aa13.28□□□□□ -0.28
UPF1-208ENST00000600012 WNT6Q9Y6F9 365 aa13.28□□□□□ -0.28
UPF1-208ENST00000600012 MACROD2A1Z1Q3 448 aa13.27□□□□□ -0.29
UPF1-208ENST00000600012 ANKRD62A6NC57 917 aa13.27□□□□□ -0.29
UPF1-208ENST00000600012 TM4SF5O14894 197 aa13.27□□□□□ -0.29
UPF1-208ENST00000600012 KRT86O43790 486 aa13.27□□□□□ -0.29
UPF1-208ENST00000600012 APBB3O95704 486 aa13.27□□□□□ -0.29
UPF1-208ENST00000600012 LSM8O95777 96 aaKnown RBP13.27□□□□□ -0.29
UPF1-208ENST00000600012 TMEM253P0C7T8 217 aa13.27□□□□□ -0.29
UPF1-208ENST00000600012 PTPN1P18031 435 aaKnown RBP13.27□□□□□ -0.29
UPF1-208ENST00000600012 CDH5P33151 784 aaPredicted RBP13.27□□□□□ -0.29
UPF1-208ENST00000600012 NSFP46459 744 aaKnown RBP13.27□□□□□ -0.29
UPF1-208ENST00000600012 DMC1Q14565 340 aa13.27□□□□□ -0.29
UPF1-208ENST00000600012 STILQ15468 1287 aa13.27□□□□□ -0.29
UPF1-208ENST00000600012 MAPRE1Q15691 268 aaKnown RBP13.27□□□□□ -0.29
UPF1-208ENST00000600012 ELF2Q15723 593 aa13.27□□□□□ -0.29
UPF1-208ENST00000600012 EML3Q32P44 896 aa13.27□□□□□ -0.29
UPF1-208ENST00000600012 PLK5Q496M5 336 aa13.27□□□□□ -0.29
UPF1-208ENST00000600012 STPG1Q5TH74 334 aa13.27□□□□□ -0.29
UPF1-208ENST00000600012 NAIF1Q69YI7 327 aaPredicted RBP13.27□□□□□ -0.29
UPF1-208ENST00000600012 FAM171BQ6P995 826 aa13.27□□□□□ -0.29
UPF1-208ENST00000600012 LCLAT1Q6UWP7 414 aa13.27□□□□□ -0.29
UPF1-208ENST00000600012 VSTM1Q6UX27 236 aa13.27□□□□□ -0.29
UPF1-208ENST00000600012 ZNF662Q6ZS27 426 aa13.27□□□□□ -0.29
UPF1-208ENST00000600012 NYAP1Q6ZVC0 841 aa13.27□□□□□ -0.29
UPF1-208ENST00000600012 TTC30AQ86WT1 665 aa13.27□□□□□ -0.29
UPF1-208ENST00000600012 TXLNBQ8N3L3 684 aa13.27□□□□□ -0.29
UPF1-208ENST00000600012 WDTC1Q8N5D0 677 aa13.27□□□□□ -0.29
UPF1-208ENST00000600012 ARL14EPQ8N8R7 260 aaPredicted RBP13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms