RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 HMGB4Q8WW32 186 aa15.74■□□□□ 0.11
LIG1-215ENST00000597901 FAM81BQ96LP2 452 aa15.74■□□□□ 0.11
LIG1-215ENST00000597901 BCCIPQ9P287 314 aaKnown RBP eCLIP15.74■□□□□ 0.11
LIG1-215ENST00000597901 CLEC4EQ9ULY5 219 aa15.74■□□□□ 0.11
LIG1-215ENST00000597901 MED19A0JLT2 244 aaPredicted RBP15.73■□□□□ 0.11
LIG1-215ENST00000597901 BCLAF3A2AJT9 711 aaKnown RBP15.73■□□□□ 0.11
LIG1-215ENST00000597901 DCDC2BA2VCK2 349 aa15.73■□□□□ 0.11
LIG1-215ENST00000597901 WASH3PC4AMC7 463 aa15.73■□□□□ 0.11
LIG1-215ENST00000597901 MAP3K13O43283 966 aa15.73■□□□□ 0.11
LIG1-215ENST00000597901 MED7O43513 233 aa15.73■□□□□ 0.11
LIG1-215ENST00000597901 TSPAN3O60637 253 aa15.73■□□□□ 0.11
LIG1-215ENST00000597901 HOXB2P14652 356 aa15.73■□□□□ 0.11
LIG1-215ENST00000597901 PON1P27169 355 aa15.73■□□□□ 0.11
LIG1-215ENST00000597901 ERCC5P28715 1186 aaPredicted RBP15.73■□□□□ 0.11
LIG1-215ENST00000597901 CREB5Q02930 508 aa15.73■□□□□ 0.11
LIG1-215ENST00000597901 BYSLQ13895 437 aaKnown RBP15.73■□□□□ 0.11
LIG1-215ENST00000597901 ARHGAP44Q17R89 818 aa15.73■□□□□ 0.11
LIG1-215ENST00000597901 EXOC3L4Q17RC7 722 aa15.73■□□□□ 0.11
LIG1-215ENST00000597901 GEN1Q17RS7 908 aa15.73■□□□□ 0.11
LIG1-215ENST00000597901 MAP7D1Q3KQU3 841 aa15.73■□□□□ 0.11
LIG1-215ENST00000597901 MPPE1Q53F39 396 aa15.73■□□□□ 0.11
LIG1-215ENST00000597901 ADGRF1Q5T601 910 aa15.73■□□□□ 0.11
LIG1-215ENST00000597901 PMS2CLQ68D20 193 aa15.73■□□□□ 0.11
LIG1-215ENST00000597901 MSANTD2Q6P1R3 559 aa15.73■□□□□ 0.11
LIG1-215ENST00000597901 STK32AQ8WU08 396 aa15.73■□□□□ 0.11
LIG1-215ENST00000597901 TMA16Q96EY4 203 aaKnown RBP15.73■□□□□ 0.11
LIG1-215ENST00000597901 PIWIL1Q96J94 861 aaKnown RBP15.73■□□□□ 0.11
LIG1-215ENST00000597901 GABRG3Q99928 467 aa15.73■□□□□ 0.11
LIG1-215ENST00000597901 SLC4A5Q9BY07 1137 aa15.73■□□□□ 0.11
LIG1-215ENST00000597901 SLC2A11Q9BYW1 496 aa15.73■□□□□ 0.11
LIG1-215ENST00000597901 THAP9Q9H5L6 903 aa15.73■□□□□ 0.11
LIG1-215ENST00000597901 ACP6Q9NPH0 428 aa15.73■□□□□ 0.11
LIG1-215ENST00000597901 VPS45Q9NRW7 570 aa15.73■□□□□ 0.11
LIG1-215ENST00000597901 LMBRD1Q9NUN5 540 aa15.73■□□□□ 0.11
LIG1-215ENST00000597901 STOML2Q9UJZ1 356 aa15.73■□□□□ 0.11
LIG1-215ENST00000597901 MYOFQ9NZM1 2061 aa15.72■□□□□ 0.11
LIG1-215ENST00000597901 SPTBN4Q9H254 2564 aa15.72■□□□□ 0.11
LIG1-215ENST00000597901 GTPBP10A4D1E9 387 aaKnown RBP15.72■□□□□ 0.11
LIG1-215ENST00000597901 BECN2A8MW95 431 aa15.72■□□□□ 0.11
LIG1-215ENST00000597901 GFRA2O00451 464 aa15.72■□□□□ 0.11
LIG1-215ENST00000597901 SLC30A4O14863 429 aa15.72■□□□□ 0.11
LIG1-215ENST00000597901 ZBTB24O43167 697 aaPredicted RBP15.72■□□□□ 0.11
LIG1-215ENST00000597901 MSI1O43347 362 aaKnown RBP15.72■□□□□ 0.11
LIG1-215ENST00000597901 THAP12O43422 761 aa15.72■□□□□ 0.11
LIG1-215ENST00000597901 CAVIN2O95810 425 aa15.72■□□□□ 0.11
LIG1-215ENST00000597901 LTFP02788 710 aa15.72■□□□□ 0.11
LIG1-215ENST00000597901 FYNP06241 537 aa15.72■□□□□ 0.11
LIG1-215ENST00000597901 GABRG2P18507 467 aa15.72■□□□□ 0.11
LIG1-215ENST00000597901 MPLP40238 635 aa15.72■□□□□ 0.11
LIG1-215ENST00000597901 USP8P40818 1118 aa15.72■□□□□ 0.11
LIG1-215ENST00000597901 ACADSBP45954 432 aa15.72■□□□□ 0.11
LIG1-215ENST00000597901 DPCR1Q3MIW9 517 aa15.72■□□□□ 0.11
LIG1-215ENST00000597901 C12orf50Q8NA57 414 aaPredicted RBP15.72■□□□□ 0.11
LIG1-215ENST00000597901 IPO4Q8TEX9 1081 aaKnown RBP15.72■□□□□ 0.11
LIG1-215ENST00000597901 GOLGA1Q92805 767 aa15.72■□□□□ 0.11
LIG1-215ENST00000597901 NUP62CLQ9H1M0 184 aa15.72■□□□□ 0.11
LIG1-215ENST00000597901 SMOC1Q9H4F8 434 aa15.72■□□□□ 0.11
LIG1-215ENST00000597901 CD248Q9HCU0 757 aa15.72■□□□□ 0.11
LIG1-215ENST00000597901 ST7Q9NRC1 585 aa15.72■□□□□ 0.11
LIG1-215ENST00000597901 RXFP3Q9NSD7 469 aa15.72■□□□□ 0.11
LIG1-215ENST00000597901 CACNA2D2Q9NY47 1150 aa15.72■□□□□ 0.11
LIG1-215ENST00000597901 APEX2Q9UBZ4 518 aa15.72■□□□□ 0.11
LIG1-215ENST00000597901 MBD1Q9UIS9 605 aaPredicted RBP15.72■□□□□ 0.11
LIG1-215ENST00000597901 MYH10P35580 1976 aa15.72■□□□□ 0.11
LIG1-215ENST00000597901 TIMM44O43615 452 aa15.71■□□□□ 0.11
LIG1-215ENST00000597901 LATS1O95835 1130 aa15.71■□□□□ 0.11
LIG1-215ENST00000597901 NCAM1P13591 858 aa15.71■□□□□ 0.11
LIG1-215ENST00000597901 GNA15P30679 374 aa15.71■□□□□ 0.11
LIG1-215ENST00000597901 MEA1Q16626 185 aa15.71■□□□□ 0.11
LIG1-215ENST00000597901 MAN2A1Q16706 1144 aa15.71■□□□□ 0.11
LIG1-215ENST00000597901 AASDHQ4L235 1098 aaPredicted RBP15.71■□□□□ 0.11
LIG1-215ENST00000597901 KIAA1211LQ6NV74 962 aa15.71■□□□□ 0.11
LIG1-215ENST00000597901 TMEM110Q86TL2 294 aa15.71■□□□□ 0.11
LIG1-215ENST00000597901 FAM114A1Q8IWE2 563 aa15.71■□□□□ 0.11
LIG1-215ENST00000597901 UNC45BQ8IWX7 931 aa15.71■□□□□ 0.11
LIG1-215ENST00000597901 WDTC1Q8N5D0 677 aa15.71■□□□□ 0.11
LIG1-215ENST00000597901 AZIN2Q96A70 460 aa15.71■□□□□ 0.11
LIG1-215ENST00000597901 ERLEC1Q96DZ1 483 aa15.71■□□□□ 0.11
LIG1-215ENST00000597901 ELOVL2Q9NXB9 296 aa15.71■□□□□ 0.11
LIG1-215ENST00000597901 THAP10Q9P2Z0 257 aaPredicted RBP15.71■□□□□ 0.11
LIG1-215ENST00000597901 DACH1Q9UI36 760 aa15.71■□□□□ 0.11
LIG1-215ENST00000597901 CYTH4Q9UIA0 394 aa15.71■□□□□ 0.11
LIG1-215ENST00000597901 NAALADL1Q9UQQ1 740 aa15.71■□□□□ 0.11
LIG1-215ENST00000597901 RAD54BQ9Y620 910 aa15.71■□□□□ 0.11
LIG1-215ENST00000597901 STON1Q9Y6Q2 735 aa15.71■□□□□ 0.11
LIG1-215ENST00000597901 FRYLO94915 3013 aa15.71■□□□□ 0.11
LIG1-215ENST00000597901 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa15.7■□□□□ 0.1
LIG1-215ENST00000597901 GOLGA6L7A0A1B0GV03 622 aa15.7■□□□□ 0.1
LIG1-215ENST00000597901 SART1O43290 800 aaKnown RBP15.7■□□□□ 0.1
LIG1-215ENST00000597901 IGLV3-27P01718 113 aa15.7■□□□□ 0.1
LIG1-215ENST00000597901 DHPSP49366 369 aaPredicted RBP15.7■□□□□ 0.1
LIG1-215ENST00000597901 TBX4P57082 545 aa15.7■□□□□ 0.1
LIG1-215ENST00000597901 ZNF445P59923 1031 aa15.7■□□□□ 0.1
LIG1-215ENST00000597901 VWA3BQ502W6 1294 aa15.7■□□□□ 0.1
LIG1-215ENST00000597901 CT47A1Q5JQC4 288 aaPredicted RBP15.7■□□□□ 0.1
LIG1-215ENST00000597901 SMYD5Q6GMV2 418 aa15.7■□□□□ 0.1
LIG1-215ENST00000597901 LPCAT2Q7L5N7 544 aa15.7■□□□□ 0.1
LIG1-215ENST00000597901 TMEFF1Q8IYR6 380 aa15.7■□□□□ 0.1
LIG1-215ENST00000597901 UCMAQ8WVF2 138 aa15.7■□□□□ 0.1
LIG1-215ENST00000597901 DDX1Q92499 740 aaKnown RBP15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms