RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 EFHC2Q5JST6 749 aa15.23■□□□□ 0.03
VRK3-212ENST00000596814 GAREM2Q75VX8 874 aa15.23■□□□□ 0.03
VRK3-212ENST00000596814 PSTKQ8IV42 348 aaKnown RBP15.23■□□□□ 0.03
VRK3-212ENST00000596814 LEMD2Q8NC56 503 aa15.23■□□□□ 0.03
VRK3-212ENST00000596814 KCTD6Q8NC69 237 aa15.23■□□□□ 0.03
VRK3-212ENST00000596814 CMASQ8NFW8 434 aaPredicted RBP15.23■□□□□ 0.03
VRK3-212ENST00000596814 ACTRT1Q8TDG2 376 aa15.23■□□□□ 0.03
VRK3-212ENST00000596814 PRDM12Q9H4Q4 367 aa15.23■□□□□ 0.03
VRK3-212ENST00000596814 IGFLR1Q9H665 355 aa15.23■□□□□ 0.03
VRK3-212ENST00000596814 SFXN1Q9H9B4 322 aa15.23■□□□□ 0.03
VRK3-212ENST00000596814 CCDC195A0A1B0GUA6 201 aa15.22■□□□□ 0.03
VRK3-212ENST00000596814 SLC12A8A0AV02 714 aa15.22■□□□□ 0.03
VRK3-212ENST00000596814 C2orf78A6NCI8 922 aa15.22■□□□□ 0.03
VRK3-212ENST00000596814 COCHO43405 550 aa15.22■□□□□ 0.03
VRK3-212ENST00000596814 KDELR1P24390 212 aa15.22■□□□□ 0.03
VRK3-212ENST00000596814 COPS2P61201 443 aa15.22■□□□□ 0.03
VRK3-212ENST00000596814 CYP4F8P98187 520 aa15.22■□□□□ 0.03
VRK3-212ENST00000596814 SCAPQ12770 1279 aa15.22■□□□□ 0.03
VRK3-212ENST00000596814 PPP2R5DQ14738 602 aa15.22■□□□□ 0.03
VRK3-212ENST00000596814 TRIP4Q15650 581 aaPredicted RBP15.22■□□□□ 0.03
VRK3-212ENST00000596814 DPYSL2Q16555 572 aa15.22■□□□□ 0.03
VRK3-212ENST00000596814 CA9Q16790 459 aa15.22■□□□□ 0.03
VRK3-212ENST00000596814 MFSD7Q6UXD7 560 aa15.22■□□□□ 0.03
VRK3-212ENST00000596814 SPOCD1Q6ZMY3 1216 aa15.22■□□□□ 0.03
VRK3-212ENST00000596814 PDZD4Q76G19 769 aaPredicted RBP15.22■□□□□ 0.03
VRK3-212ENST00000596814 TKTL2Q9H0I9 626 aa15.22■□□□□ 0.03
VRK3-212ENST00000596814 TTYH1Q9H313 450 aaPredicted RBP15.22■□□□□ 0.03
VRK3-212ENST00000596814 ATXN3LQ9H3M9 355 aa15.22■□□□□ 0.03
VRK3-212ENST00000596814 DHX35Q9H5Z1 703 aaKnown RBP15.22■□□□□ 0.03
VRK3-212ENST00000596814 TRPC7Q9HCX4 862 aa15.22■□□□□ 0.03
VRK3-212ENST00000596814 ARHGEF38Q9NXL2 777 aa15.22■□□□□ 0.03
VRK3-212ENST00000596814 SMARCAL1Q9NZC9 954 aa15.22■□□□□ 0.03
VRK3-212ENST00000596814 LMCD1Q9NZU5 365 aa15.22■□□□□ 0.03
VRK3-212ENST00000596814 DNMT3BQ9UBC3 853 aaKnown RBP15.22■□□□□ 0.03
VRK3-212ENST00000596814 TTC7AQ9ULT0 858 aaPredicted RBP15.22■□□□□ 0.03
VRK3-212ENST00000596814 DOCK6Q96HP0 2047 aa15.22■□□□□ 0.03
VRK3-212ENST00000596814 A0A1W2PRU2 124 aa15.21■□□□□ 0.03
VRK3-212ENST00000596814 FGGP02679 453 aa15.21■□□□□ 0.03
VRK3-212ENST00000596814 RHOP08100 348 aa15.21■□□□□ 0.03
VRK3-212ENST00000596814 SRGAP2BP0DMP2 458 aa15.21■□□□□ 0.03
VRK3-212ENST00000596814 SLC2A3P11169 496 aa15.21■□□□□ 0.03
VRK3-212ENST00000596814 PTPN7P35236 360 aa15.21■□□□□ 0.03
VRK3-212ENST00000596814 ADRA1BP35368 520 aa15.21■□□□□ 0.03
VRK3-212ENST00000596814 ARSEP51690 589 aa15.21■□□□□ 0.03
VRK3-212ENST00000596814 KPNA1P52294 538 aaPredicted RBP15.21■□□□□ 0.03
VRK3-212ENST00000596814 HYAL1Q12794 435 aa15.21■□□□□ 0.03
VRK3-212ENST00000596814 PDK2Q15119 407 aa15.21■□□□□ 0.03
VRK3-212ENST00000596814 CLUL1Q15846 466 aa15.21■□□□□ 0.03
VRK3-212ENST00000596814 PPP2R5EQ16537 467 aa15.21■□□□□ 0.03
VRK3-212ENST00000596814 MAP7D3Q8IWC1 876 aa15.21■□□□□ 0.03
VRK3-212ENST00000596814 ZNF707Q96C28 371 aaPredicted RBP15.21■□□□□ 0.03
VRK3-212ENST00000596814 SLC39A13Q96H72 371 aa15.21■□□□□ 0.03
VRK3-212ENST00000596814 FCRL2Q96LA5 508 aaPredicted RBP15.21■□□□□ 0.03
VRK3-212ENST00000596814 NAP1L3Q99457 506 aaPredicted RBP15.21■□□□□ 0.03
VRK3-212ENST00000596814 CALN1Q9BXU9 219 aa15.21■□□□□ 0.03
VRK3-212ENST00000596814 OSBPL8Q9BZF1 889 aa15.21■□□□□ 0.03
VRK3-212ENST00000596814 PCDH18Q9HCL0 1135 aa15.21■□□□□ 0.03
VRK3-212ENST00000596814 ANLNQ9NQW6 1124 aa15.21■□□□□ 0.03
VRK3-212ENST00000596814 TMPRSS4Q9NRS4 437 aa15.21■□□□□ 0.03
VRK3-212ENST00000596814 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.21■□□□□ 0.03
VRK3-212ENST00000596814 HBS1LQ9Y450 684 aaKnown RBP15.21■□□□□ 0.03
VRK3-212ENST00000596814 NOTCH4Q99466 2003 aa15.21■□□□□ 0.03
VRK3-212ENST00000596814 C2orf16Q68DN1 1984 aa15.21■□□□□ 0.02
VRK3-212ENST00000596814 C3orf70A6NLC5 250 aaPredicted RBP15.2■□□□□ 0.02
VRK3-212ENST00000596814 PDE2AO00408 941 aaPredicted RBP15.2■□□□□ 0.02
VRK3-212ENST00000596814 APOEP02649 317 aa15.2■□□□□ 0.02
VRK3-212ENST00000596814 CD48P09326 243 aa15.2■□□□□ 0.02
VRK3-212ENST00000596814 CDKN2BP42772 138 aa15.2■□□□□ 0.02
VRK3-212ENST00000596814 RING1Q06587 406 aa15.2■□□□□ 0.02
VRK3-212ENST00000596814 DPYSL3Q14195 570 aa15.2■□□□□ 0.02
VRK3-212ENST00000596814 LLGL1Q15334 1064 aa15.2■□□□□ 0.02
VRK3-212ENST00000596814 LONRF2Q1L5Z9 754 aa15.2■□□□□ 0.02
VRK3-212ENST00000596814 TFDP3Q5H9I0 405 aa15.2■□□□□ 0.02
VRK3-212ENST00000596814 PPP6R3Q5H9R7 873 aaPredicted RBP15.2■□□□□ 0.02
VRK3-212ENST00000596814 SLC13A5Q86YT5 568 aaPredicted RBP15.2■□□□□ 0.02
VRK3-212ENST00000596814 EFHBQ8N7U6 833 aa15.2■□□□□ 0.02
VRK3-212ENST00000596814 CEP112Q8N8E3 955 aa15.2■□□□□ 0.02
VRK3-212ENST00000596814 SHKBP1Q8TBC3 707 aa15.2■□□□□ 0.02
VRK3-212ENST00000596814 SMG7Q92540 1137 aaKnown RBP15.2■□□□□ 0.02
VRK3-212ENST00000596814 KCTD15Q96SI1 283 aaPredicted RBP15.2■□□□□ 0.02
VRK3-212ENST00000596814 PIDD1Q9HB75 910 aa15.2■□□□□ 0.02
VRK3-212ENST00000596814 hCG_1818297A0A087WSY0 165 aa15.2■□□□□ 0.02
VRK3-212ENST00000596814 I6L893 689 aaPredicted RBP15.2■□□□□ 0.02
VRK3-212ENST00000596814 PAPLNO95428 1278 aa15.2■□□□□ 0.02
VRK3-212ENST00000596814 GLP2RO95838 553 aa15.2■□□□□ 0.02
VRK3-212ENST00000596814 OLFM2O95897 454 aa15.2■□□□□ 0.02
VRK3-212ENST00000596814 MOCS2O96007 188 aaPredicted RBP15.2■□□□□ 0.02
VRK3-212ENST00000596814 IGLV3-27P01718 113 aa15.2■□□□□ 0.02
VRK3-212ENST00000596814 HMBSP08397 361 aa15.2■□□□□ 0.02
VRK3-212ENST00000596814 GJA1P17302 382 aa15.2■□□□□ 0.02
VRK3-212ENST00000596814 L1CAMP32004 1257 aa15.2■□□□□ 0.02
VRK3-212ENST00000596814 CCR2P41597 374 aa15.2■□□□□ 0.02
VRK3-212ENST00000596814 GRIN2CQ14957 1233 aa15.2■□□□□ 0.02
VRK3-212ENST00000596814 TAZQ16635 292 aa15.2■□□□□ 0.02
VRK3-212ENST00000596814 TXNDC8Q6A555 127 aa15.2■□□□□ 0.02
VRK3-212ENST00000596814 ANKS1BQ7Z6G8 1248 aa15.2■□□□□ 0.02
VRK3-212ENST00000596814 GRASPQ7Z6J2 395 aaPredicted RBP15.2■□□□□ 0.02
VRK3-212ENST00000596814 VSIG1Q86XK7 387 aa15.2■□□□□ 0.02
VRK3-212ENST00000596814 C12orf76Q8N812 135 aaPredicted RBP15.2■□□□□ 0.02
VRK3-212ENST00000596814 MNS1Q8NEH6 495 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms